TCONS_00040783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040783
Unique NameTCONS_00040783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040783 ID=TCONS_00040783|Name=TCONS_00040783|organism=Clytia hemisphaerica|type=transcript|length=535bp
ACCCCGTAACCCACATCGGCGCAGGTTGACGCAACAGCTTGAAGAACGAA
GTCTGCAGCCGAACCGCCTCTCTGCAGCCGCTCTCGATTGTTGTTGTTcg
ttttacttttctttttctccgtttaatttttttgatgacctTTCGCAAGT
CCCCTTTTTCTTCCGATTCGGAAATGGCATCAAATCGTTCATTAgcgtca
aattcaaaaaattcttcaGCCTCAGCCATATTCTAAAATAAATTCAGGAa
cacattttattaaaagtataAAATCACGCATTTATAATAACACACACATA
CACAAAATTTCTATGATTTACAAAACCAAGCTTTCACATCTCCACTTCTG
TTTTAAGTTTTTGAGCTAGGGCTGCCAAGAACTCAGAGTTCTTGACAGCA
CCCTCTACGTTAAACATCTCGATTCTGTCCTCTGTGGGATTGTTCAGACC
ATCCCGGCTTCGCACCCTTTTTACCACAAGATAGATTATAAGGGAGACTA
TCATCAACAGGGCCACCATACCAAGTATCCCGGGG
Run BLAST on NCBI

transcript from alignment at sc0002559:18570..19104

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040783 ID=TCONS_00040783|Name=TCONS_00040783|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at sc0002559:18570..19104 (Clytia hemisphaerica)
CCCCGGGATACTTGGTATGGTGGCCCTGTTGATGATAGTCTCCCTTATAA
TCTATCTTGTGGTAAAAAGGGTGCGAAGCCGGGATGGTCTGAACAATCCC
ACAGAGGACAGAATCGAGATGTTTAACGTAGAGGGTGCTGTCAAGAACTC
TGAGTTCTTGGCAGCCCTAGCTCAAAAACTTAAAACAGAAGTGGAGATGT
GAAAGCTTGGTTTTGTAAATCATAGAAATTTTGTGTATGTGTGTGTTATT
ATAAATGCGTGATTTtatacttttaataaaatgtgtTCCTGAATTTATTT
TAGAATATGGCTGAGGCtgaagaattttttgaatttgacgcTAATGAACG
ATTTGATGCCATTTCCGAATCGGAAGAAAAAGGGGACTTGCGAAaggtca
tcaaaaaaattaaacggagaaaaagaaaagtaaaacgAACAACAACAATC
GAGAGCGGCTGCAGAGAGGCGGTTCGGCTGCAGACTTCGTTCTTCAAGCT
GTTGCGTCAACCTGCGCCGATGTGGGTTACGGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024857XLOC_024857Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040783-exon-sc0002559-1491911889:18570..19104TCONS_00040783-exon-sc0002559-1491911889:18570..19104Clytia hemisphaericaexon
TCONS_00040783-exon-sc0002559-1510915933:18570..19104TCONS_00040783-exon-sc0002559-1510915933:18570..19104Clytia hemisphaericaexon
TCONS_00040783-exon-sc0002559-1575043694:18570..19104TCONS_00040783-exon-sc0002559-1575043694:18570..19104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002559supercontigsc0002559:18570..19104 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.43531	0.636743	0.24644	0.361655	0.44028	0.811801	0.979404	1.83381	0.917068	1.02234	1.21282	0.869742	1.51993	1.2778	0.247183	0.132633	0.735267	1.42351	0.462744	0.121057	1.05221	0.615875	0.374338	0.113443	0.817902	1.0428	0.895344	0.637024	0.12079	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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