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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040654 ID=TCONS_00040654|Name=TCONS_00040654|organism=Clytia hemisphaerica|type=transcript|length=944bp
GAAGGCATTACATCAATGCAAACAATTTTGAATGTCAgcttgaagatgaa
gaaaatgatgaagacgaaagtgaaaatatttttttgcgtgaaGACTGGAT
GGATATAGCTGACTTGAATTCCATACCCACTAATATTTCAACAGAAAATC
AACAGTATTGGACTGATTCTTTTGATTCCTATACTCAAGAGCAAATTAAT
GCAATGCCTTTTTGGATTGAagataacaaaaaaacttttgagaacGAAAA
TGCCACAGATTACAGTCAGTATCAAGTCGAAAACCTTAATGCAGAGCAGC
TTCAAGCCTACAATATTGTGTATAATCATGCTCAAAATACCAATGCAGAC
CCTTTGCAAATGATAATCACTGGAATTGCAGGAAGTGGAAAGTCATATTT
GATTAATTGCATTAAAAAACTCCTTGGCAAAAAGTGTTTATTGACATCAT
ATTTCGGTATTGCTGCCTTTAACATTAACGGGAGAACATTGCACAGCACT
CTTCGATTGCCAATTAGAAACAAATTGAAGCATGAACTCAAAGGTAATTC
ACTTGACAATTTACAAACTAACCTTAAAGACATAGAGTATATTATTATTG
ATGAATTTTCTGTAGTAGGCCAAAGATCACTAGGCTGGATAGATAGTCGT
TGTCGCCAAGCAACAGGGAAATTAGAAACATTATTTGGTGGAATATCTAT
AATATTAGTAGGAGACGTTGCACAATTACCACCTGTTATGGATGATGTAC
TATACCACGCTTtcccaaaaaatgaaattgcagtTGCTGGCTATGTGGCC
TATTGTTGTTTTAGAACTGTTGTAAAACTTAAATCAAACATGAGGTCAGC
TGGTGAGGATGAGTCTcaaaagaaatttagaaaagtcttgaaaaatttga
gaaatggaaaatcaaCAATGGAAGACTGGAATTTTTTCTTAACC Run BLAST on NCBI protein sequence of TCONS_00040654-protein >TCONS_00040654-protein ID=TCONS_00040654-protein|Name=TCONS_00040654-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
RHYINANNFECQLEDEENDEDESENIFLREDWMDIADLNSIPTNISTENQ
QYWTDSFDSYTQEQINAMPFWIEDNKKTFENENATDYSQYQVENLNAEQL
QAYNIVYNHAQNTNADPLQMIITGIAGSGKSYLINCIKKLLGKKCLLTSY
FGIAAFNINGRTLHSTLRLPIRNKLKHELKGNSLDNLQTNLKDIEYIIID
EFSVVGQRSLGWIDSRCRQATGKLETLFGGISIILVGDVAQLPPVMDDVL
YHAFPKNEIAVAGYVAYCCFRTVVKLKSNMRSAGEDESQKKFRKVLKNLR
NGKSTMEDWNFFLT Run BLAST on NCBI transcript from alignment at sc0002510:14059..15002 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040654 ID=TCONS_00040654|Name=TCONS_00040654|organism=Clytia hemisphaerica|type=transcript|length=944bp|location=Sequence derived from alignment at sc0002510:14059..15002 (Clytia hemisphaerica)
GGTTAAGAAAAAATTCCAGTCTTCCATTGttgattttccatttctcaaat
ttttcaagacttttctaaatttcttttgAGACTCATCCTCACCAGCTGAC
CTCATGTTTGATTTAAGTTTTACAACAGTTCTAAAACAACAATAGGCCAC
ATAGCCAGCAactgcaatttcattttttgggaAAGCGTGGTATAGTACAT
CATCCATAACAGGTGGTAATTGTGCAACGTCTCCTACTAATATTATAGAT
ATTCCACCAAATAATGTTTCTAATTTCCCTGTTGCTTGGCGACAACGACT
ATCTATCCAGCCTAGTGATCTTTGGCCTACTACAGAAAATTCATCAATAA
TAATATACTCTATGTCTTTAAGGTTAGTTTGTAAATTGTCAAGTGAATTA
CCTTTGAGTTCATGCTTCAATTTGTTTCTAATTGGCAATCGAAGAGTGCT
GTGCAATGTTCTCCCGTTAATGTTAAAGGCAGCAATACCGAAATATGATG
TCAATAAACACTTTTTGCCAAGGAGTTTTTTAATGCAATTAATCAAATAT
GACTTTCCACTTCCTGCAATTCCAGTGATTATCATTTGCAAAGGGTCTGC
ATTGGTATTTTGAGCATGATTATACACAATATTGTAGGCTTGAAGCTGCT
CTGCATTAAGGTTTTCGACTTGATACTGACTGTAATCTGTGGCATTTTCg
ttctcaaaagtttttttgttatctTCAATCCAAAAAGGCATTGCATTAAT
TTGCTCTTGAGTATAGGAATCAAAAGAATCAGTCCAATACTGTTGATTTT
CTGTTGAAATATTAGTGGGTATGGAATTCAAGTCAGCTATATCCATCCAG
TCttcacgcaaaaaaatattttcactttcgtcttcatcattttcttcatc
ttcaagcTGACATTCAAAATTGTTTGCATTGATGTAATGCCTTC Coding sequence (CDS) from alignment at sc0002510:14059..15002 >TCONS_00040654 ID=TCONS_00040654|Name=TCONS_00040654|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at sc0002510:14059..15002 (Clytia hemisphaerica)
GGTTAAGAAAAAATTCCAGTCTTCCATTGttgattttccatttctcaaat
ttttcaagacttttctaaatttcttttgAGACTCATCCTCACCAGCTGAC
CTCATGTTTGATTTAAGTTTTACAACAGTTCTAAAACAACAATAGGCCAC
ATAGCCAGCAactgcaatttcattttttgggaAAGCGTGGTATAGTACAT
CATCCATAACAGGTGGTAATTGTGCAACGTCTCCTACTAATATTATAGAT
ATTCCACCAAATAATGTTTCTAATTTCCCTGTTGCTTGGCGACAACGACT
ATCTATCCAGCCTAGTGATCTTTGGCCTACTACAGAAAATTCATCAATAA
TAATATACTCTATGTCTTTAAGGTTAGTTTGTAAATTGTCAAGTGAATTA
CCTTTGAGTTCATGCTTCAATTTGTTTCTAATTGGCAATCGAAGAGTGCT
GTGCAATGTTCTCCCGTTAATGTTAAAGGCAGCAATACCGAAATATGATG
TCAATAAACACTTTTTGCCAAGGAGTTTTTTAATGCAATTAATCAAATAT
GACTTTCCACTTCCTGCAATTCCAGTGATTATCATTTGCAAAGGGTCTGC
ATTGGTATTTTGAGCATGATTATACACAATATTGTAGGCTTGAAGCTGCT
CTGCATTAAGGTTTTCGACTTGATACTGACTGTAATCTGTGGCATTTTCg
ttctcaaaagtttttttgttatctTCAATCCAAAAAGGCATTGCATTAAT
TTGCTCTTGAGTATAGGAATCAAAAGAATCAGTCCAATACTGTTGATTTT
CTGTTGAAATATTAGTGGGTATGGAATTCAAGTCAGCTATATCCATCCAG
TCttcacgcaaaaaaatattttcactttcgtcttcatcattttcttcatc
ttcaagcTGACATTCAAAATTGTTTGCATTGATGTAATGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040654-exon-sc0002510-1491911889:14059..15002 | TCONS_00040654-exon-sc0002510-1491911889:14059..15002 | Clytia hemisphaerica | exon |
| TCONS_00040654-exon-sc0002510-1510915933:14059..15002 | TCONS_00040654-exon-sc0002510-1510915933:14059..15002 | Clytia hemisphaerica | exon |
| TCONS_00040654-exon-sc0002510-1575043694:14059..15002 | TCONS_00040654-exon-sc0002510-1575043694:14059..15002 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002510 | supercontig | sc0002510:14059..15002 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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