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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040431 ID=TCONS_00040431|Name=TCONS_00040431|organism=Clytia hemisphaerica|type=transcript|length=1407bp
ttagaTGAAGAGGATGAAAAGACTGAATTCTTGGATAAGACGTCTCACGC
TGAACACGACATGGACCTCACCAGACTAACAGAACTTTCACCCAGTGGGG
ATGATTTGAATGaaactcaaaaaattcaaaatttctttaaattattttct
gATGACAAGCCAACTACAAAAAATGGAATGGACACGACTCTTGGGATGCC
ATCTCTACACAGTGAATCACCACATGTAAACAACAATAAAACTATCCTCA
ATAACTATGACGTTATGGACGAGGCTTCTGAAACATTTGTGTCTTTCCCT
CTAGGTACGGTCTAAGCTGAAAAAGAAACTAAAATCTCTTCTGCTGACTT
CTTGAGTAATTTTAAATCAACCAATGACAAGTCACCAAAGAAAGATAGCA
CTATTAACCAGATCTTGAATGCTATTGACACACCACCGGAATCCTCCTTA
GTCTCAGGTAAAGACTTTCTTGCAAAGCTCATAAGTCATAAGACACCATC
AGAAAGCGATGACCCACTTCCAGGGGCGATCGCTCTTGAACTTAATAACA
TAACCACATTAAGCGAAGCTTCAATGGATATTACAGATGATGAGAACCAA
AGAGAACTATGATGTTAAATCAACTTAACATGTCTGCTGCTATCAGCCCA
TCCAGTAACACAAAAAATAGCTTGGAAGCTCATCAAGAAACTCTCACCAA
AGATGATCCTCCTGAAAATCAAACCAACATTGACAACAAAAATGTTCAGT
TGAcgccaacaaaaacaaactttcgtGACAAATTTGCCGACTCAAGTGAT
TTGGTTACTGTTTGTATCACACCTGATATCGAGACTGATGCATAGCCTGT
AGCCCCTTCTACAGAAACACCCTCGTTCcttgaagatttcaaaaatatca
atgttgGACCTAAGGCTAACAAGAGTAATGAAACCACTGgctcttccttt
attatggactTCAAAGGGATGTGTGTGGATAGCCCTGTAGATAAATCACA
AACTGAAATTAGTACTGAAGGACCAAAATCAAGTACTCAAATACAAAAAG
GATTCTCCGCAACTCCAGTAAGCAGCTACAGAGACTATTGTTCAACTTAC
GGAAAATCACCAAATATCAGCAATATAACTAAAATCGCACTTGGAGATTC
ACCAACTAAAACAATCTCTATTCCAGCAACTCAGACTCCTATCTTGGTCA
CACCCAGAAGAAACGCCAAGGAGACTGCCACATCCATATCAAATGAAACA
CCATCTTTATCACATGATAAGCTTGCCCCTAAGGAAGACATCCACTCAAT
TTCAcaattagtagggggaaatttgttcgtttttttgaggtcgctcgact
tttttagtcaaagcacttgttatacatttttggaaagctaaggggtaggg
gaatcaa Run BLAST on NCBI transcript from alignment at sc0002426:18708..20564+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040431 ID=TCONS_00040431|Name=TCONS_00040431|organism=Clytia hemisphaerica|type=transcript|length=1857bp|location=Sequence derived from alignment at sc0002426:18708..20564+ (Clytia hemisphaerica)
ttagaTGAAGAGGATGAAAAGGTGAGTTTACAACCCTTCTGTGCTCATCC
CTGAACCTCAATATTACTATTTCCGCAACACGTACAGGTGTATCAGAAAT
TGATTTCTACTTGTGTTTCTCTATTTTCGTTTGTCAGCTTGACGTAGTAT
TTCCTTTATAATTTTATAACTCTTTCTAGGTTTATTCAGACTTCAGACTA
TAATGGATATGTCTTGTGTTTAAGCAAAAGGTCTTTGTCTAGGGTTGaag
attattttgataattgcccctttttttaaatgctCCCCCCCCCTCGAGTA
AACACTCCTACTgcctaaaatccaaaaaaaggtGAACTccagggcgttta
ttcgaagtgatATGGTATATAATTTGTTAGAAGGAGTGACCTATAGTAGG
GTTGAtaaagaatgaatgaataaatgatTACTGGTTCATTTTTATCTCCT
TATTATTGTTTTTTCTCATAGACTGAATTCTTGGATAAGACGTCTCACGC
TGAACACGACATGGACCTCACCAGACTAACAGAACTTTCACCCAGTGGGG
ATGATTTGAATGaaactcaaaaaattcaaaatttctttaaattattttct
gATGACAAGCCAACTACAAAAAATGGAATGGACACGACTCTTGGGATGCC
ATCTCTACACAGTGAATCACCACATGTAAACAACAATAAAACTATCCTCA
ATAACTATGACGTTATGGACGAGGCTTCTGAAACATTTGTGTCTTTCCCT
CTAGGTACGGTCTAAGCTGAAAAAGAAACTAAAATCTCTTCTGCTGACTT
CTTGAGTAATTTTAAATCAACCAATGACAAGTCACCAAAGAAAGATAGCA
CTATTAACCAGATCTTGAATGCTATTGACACACCACCGGAATCCTCCTTA
GTCTCAGGTAAAGACTTTCTTGCAAAGCTCATAAGTCATAAGACACCATC
AGAAAGCGATGACCCACTTCCAGGGGCGATCGCTCTTGAACTTAATAACA
TAACCACATTAAGCGAAGCTTCAATGGATATTACAGATGATGAGAACCAA
AGAGAACTATGATGTTAAATCAACTTAACATGTCTGCTGCTATCAGCCCA
TCCAGTAACACAAAAAATAGCTTGGAAGCTCATCAAGAAACTCTCACCAA
AGATGATCCTCCTGAAAATCAAACCAACATTGACAACAAAAATGTTCAGT
TGAcgccaacaaaaacaaactttcgtGACAAATTTGCCGACTCAAGTGAT
TTGGTTACTGTTTGTATCACACCTGATATCGAGACTGATGCATAGCCTGT
AGCCCCTTCTACAGAAACACCCTCGTTCcttgaagatttcaaaaatatca
atgttgGACCTAAGGCTAACAAGAGTAATGAAACCACTGgctcttccttt
attatggactTCAAAGGGATGTGTGTGGATAGCCCTGTAGATAAATCACA
AACTGAAATTAGTACTGAAGGACCAAAATCAAGTACTCAAATACAAAAAG
GATTCTCCGCAACTCCAGTAAGCAGCTACAGAGACTATTGTTCAACTTAC
GGAAAATCACCAAATATCAGCAATATAACTAAAATCGCACTTGGAGATTC
ACCAACTAAAACAATCTCTATTCCAGCAACTCAGACTCCTATCTTGGTCA
CACCCAGAAGAAACGCCAAGGAGACTGCCACATCCATATCAAATGAAACA
CCATCTTTATCACATGATAAGCTTGCCCCTAAGGAAGACATCCACTCAAT
TTCAcaattagtagggggaaatttgttcgtttttttgaggtcgctcgact
tttttagtcaaagcacttgttatacatttttggaaagctaaggggtaggg
gaatcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040431-exon-sc0002426-1491911889:18708..18728 | TCONS_00040431-exon-sc0002426-1491911889:18708..18728 | Clytia hemisphaerica | exon |
| TCONS_00040431-exon-sc0002426-1510915933:18708..18728 | TCONS_00040431-exon-sc0002426-1510915933:18708..18728 | Clytia hemisphaerica | exon |
| TCONS_00040431-exon-sc0002426-1575043694:18708..18728 | TCONS_00040431-exon-sc0002426-1575043694:18708..18728 | Clytia hemisphaerica | exon |
| TCONS_00040431-exon-sc0002426-1491911889:19179..20564 | TCONS_00040431-exon-sc0002426-1491911889:19179..20564 | Clytia hemisphaerica | exon |
| TCONS_00040431-exon-sc0002426-1510915933:19179..20564 | TCONS_00040431-exon-sc0002426-1510915933:19179..20564 | Clytia hemisphaerica | exon |
| TCONS_00040431-exon-sc0002426-1575043694:19179..20564 | TCONS_00040431-exon-sc0002426-1575043694:19179..20564 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002426 | supercontig | sc0002426:18708..20564 + |
Blast
The following BLAST results are available for this feature:
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