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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040105 ID=TCONS_00040105|Name=TCONS_00040105|organism=Clytia hemisphaerica|type=transcript|length=1820bp
AAAAGATTTGACGTTCGAATCGAGGAAGCTCCTACAGTGactttcaagca
aaaataattctgacgtcaattattcACAATATCAAGTGATGTCGTTGCCT
TTACCAGACGACCACGGATTTTTCCTCGACACTGTTcagagtgataaaaa
aatcgcgcgttgggatagagataggctaGTGACGCCGTTGcaaattttcg
aatttaaaaAGGCGTGGCATTTTCTACGAGTTACTAAAAATGTGTTTTGA
AAGTCTATGCACAAGTAAAATCGGTGTTCTTTTAGGCGAGAAAATGATAG
AAGTTGTTGTCCCATAAGCTGCGATATACCTATGATCGTTTTAAAATTAA
AGTATTTATTTAAAACTCATATCATAATCCATAACTTAACTTTGCgtaat
attgttttttttttacagacaTGTATTCTTGGGTCGGGGATGACATTGCA
ATAGAAAAACCCGATGGAAAAACGTACATAATTTGTCTTGgaataaaaca
agaaaaagACAAACTGACAGCCAAAGAAAATGGAGATATTCAAGTCAATT
TGGAAGACGGTTCAGAAGAAGAAGGCATCTATGTTATCGCTTTGCCGTCA
AACGAATCCACAGGTTTTCAATCAAATGAAGAAGAGGAAGAggaagagga
agaagaagaagaatacGAAAATGTTTGCATTGAAATTGGTCCTTCAGAGC
AAGGTGAACCTAATTCAGACACAGTATACGAAAACTAATAAAACAATCTC
GTAAGAATATCGACCAGTCTCGTACCGAGAGCCACTTACACCgctttttg
atttaatttatgAATGTGATATCACCATTTGCTCTCACAATCGTAAAAAG
CGAACAAAGAGACTGGATACTAGCTTTTATTTCAGCTTGAAAATAGTTTG
GTGTAAATGGGTCCACCTGATAAAGTTGAATTGGGTCTGAAATGAACGTG
TAGATCAGACTTAGACGCTCGCTTGAAGAAGATTGAGTTCTGGGTTTAAT
CCATGGGATGTGAGGGTTTTCTGATTTTGATCTAGAAGTTTTCTCTTTGT
AATACAGTAGATTCTCTTTAGTTCGAACCTTTAAAACTATAAAGTCTCCT
TAACTCGAGCAAGTTTTATGGTCACTTCAGTTAACAATGCCTTATTACCT
ATAAACCTTACTTTATAATTCAAAATTTCCTATGAACGTTGCAACGCTGT
CCCATAGCCCCGATGGAACTTTTTCCCACAGTGGGGATGCAAATTTCTCT
TTAATTCGAACTTCTATAACTAAAATGTCTATTTAACTGGAGCAGGTTTG
ATGGTTCCTTTAGTTAACAATGCCTTATAAACCTGTAAACCTTTCTTCAT
AACTCGAAATTTCCTTAACTCGAACAAGTTTGTGTTCCCAACGATGCGTT
TTTGAGTTATCGACGTTACAACGCTGTCTCATAGCCCCAATGAGACTTTT
TCCCATAGTGGGGATGTAAAATTCTATCGAAAACCCAGTAAGGATAAAAA
AATGTTGTATAGCGAATCTGCAGCGGAAAAATATGCTGACAGTGCCAACA
CTGCCGGGCCTTTACACCACTTAGGCTTTCTTGTTCGAGTTAAGGAGAAA
TTAGAGTTATAGAGGTTCGAGTTAAAGAGACTCCACTGTATGAAACTTTC
AGCTCACAAAATTTTATAGAATTTTAAGGCATTTCTTGTTTGAAAttagt
ttatttttaaaattcacaGCTTGAAGTTGGAGAGCAGAGTTGCAAACTCA
ATGGAACTAATATGGACAGTTTCTTTTATAATATGTAAATAACATTATAT
CACAACTCTCCTactttttt Run BLAST on NCBI transcript from alignment at sc0002308:22121..26576+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040105 ID=TCONS_00040105|Name=TCONS_00040105|organism=Clytia hemisphaerica|type=transcript|length=4456bp|location=Sequence derived from alignment at sc0002308:22121..26576+ (Clytia hemisphaerica)
AAAAGATTTGACGTTCGAATCGAGGAAGCTCCTACAGTGactttcaagca
aaaataattctgacgtcaattattcACAATATCAAGTGATGTCGTTGCCT
TTACCAGACGACCACGGATTTTTCCTCGACACTGTTcagagtgataaaaa
aatcgcgcgttgggatagagataggctaGTGACGCCGTTGcaaattttcg
aatttaaaaAGGCGTGGCATTTTCTACGAGTTACTAAAAATGTGTTTTGA
AAGTCTATGCACAAGTAAAATCGGTGTTCTTTTAGGCGAGAAAATGATAG
AAGTTGTTGTCCCATAAGCTGCGATATACCTATGATCGTTTTAAAATTAA
AGTATTTATTTAAAACTCATATCATAATCCATAACTTAACTTTGCgtaat
attgttttttttttacagacaTGTATTCTTGGGTCGGGGATGACATTGCA
ATAGAAAAACCCGATGGAAAAACGTACATAATTTGTCTTGgaataaaaca
agaaaaaggtgctagaaaatcattttgaatATCATAGATTCctctgtaat
tatcagacataTCACTCTTGTTCCACGATTTTATTGGTCCTATTTTTACA
CGCTTATCatgactctctaattcgaacctctctCATTCGAAATTTGATAC
AAGGAGGGCGTCTTACATTTTTCACAAGAGCACTCCTACACTTGCGTTTT
TGATACCGTCGTCGAGCAGAATATTCTTGTATTTCCTTTACCAGTCTCCT
CAAATACTAACCGGGCCACTGAGATTCGGCATGTATATAAAAATTAACAT
ATTATTCCCCTCATTTGGAAAGTGGCATAAAATGACGAGGGTAAATTGTA
TAAAAAAATCTCGATTGAGTTTTTGCACAACTTTCACTGTATTCTGGTTT
CAGACAAACTGACAGCCAAAGAAAATGGAGATATTCAAGTCAATTTGGAA
GACGGTTCAGAAGAAGAAGGCATCTATGTTATCGCTTTGCCGTCAAACGA
ATCCACAGGTATGTGAGATAAGACCATGTTCAAACGTcacggttccgttc
cgttccgttccgaaacggttTCGAAACAAGCGTGAACGTCAAGATTCGAA
ACGTcgaaaaagaagacgttacaaagcaaaaaagatcaaaacggtttcgc
ttcacttttttcatcggaacggaacttctccgttttcttgctccgaaacg
ttccaaTACCAATATGAACagactcgatccgtaacgaaaatcacaccgga
gcgaaacggaacagtaacgtgtgaacatagtctaatcatttttcaataga
attactcTCAGGGAGGGACATCCAGGCAAAATGACCGACGGGTATATGTA
CACCCTAAAGTGTGTGTTTTAAATACTGAAATACTGTTCTTCTTTAGCTT
TTTTTATCTTTCCTAGAAGGTACTCGACCGATTTTTCTGTATTTTCTTCT
TGCTAAAATCCTATGTAATAAACCACCAATGGAAGCTTCGAGTAATGACA
TTATAAATCCACGCCCAGTCTCCAACCAAAGAGTTCTTATTTTTCAGGTT
TCCAAGTGCATGATGGAGAAGGAAATTATGATATCATTGAAGAATCAACG
CAAggtaaagtcaaaaataaacaatctatataccttttcgaccgtagccg
ccaattgccgcgcgggcatttctTTGTCCgttttatcccactaaactcga
tccaaaccttttttgacacatttttctattgtcaatAGATGCAAAAAatg
gactgggacggttttagtggaataaagcggacaaaaaaatacccgCGCGT
CAATTGGccactacggtcgaaaaggtataTCATAAATCATGTTCTTAGGC
TTTATTTTGggttcaatagaccttttcataaattacgtcatgaacatcac
ttgcctcttattcaaacaattaccatgggcgcgttcacactggaaagttt
acctaattaaatctatcaaagttaaacaaagagatttatgatggatgaat
acactggtttattacagttctttgtagNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNgggtgtccctaattaaagtatcgagt
cgaaacacaactatgagtagaaagttttatgtgcgtgttcacaaaattgt
attttaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttgtaataagcct
gtgtgatggagaacgttcttatattttagcgataacacacacaaactttt
ctactcaatcgcatgttcaaactcgatactttaattaaaACGGAAGGCaa
ttttgttcgagttaaagccATTTTCGAGCCCTGGATACTAgtttataaga
cattgttaaAGTGAAGAAACCATCTAACTTGTTtgaattaaggagacatt
cgagttatagagggtCGTGTTATAAACATTCCACTGTATAAAAGTTTATG
TGCAAGCGAAACCAATCCTTATATTATCATggtgtcctgaaaaaaagtag
AAGGTCGAAACATATCGCTAGGTACTGTCGCTTTGTACTACTGTTTATTA
ACCCGAAAAAGCATCGTATTATGCAgaggtagagcatccggctacagtGT
GTGTAAGTCAGGGGTTTAATCCCCGACTGGGTACACTGGGTATCACAAAA
ATCTTCNGGTGTGTGTAAGTCAGGGGTTTAATCCCCGACTGGGTACACTG
GGTATCACGAAAATCTTCGCTCTTAGTGAAAAATGGGTCAGGGGGGGAGT
AAAGAAAGGGCGAGGTCGGCATTGAAACATGCTTTGCAAAGCAATCTGTT
TTGATTTCTTCATCTTTCCGGACTCTCttccatttttttttgtcaaaata
attgGATTTTTTTACGTTATGATATGATTTCAATTATTTGCAATTTTAGG
TTTTCAATCAAATGAAGAAGAGGAAGAggaagaggaagaagaagaagaat
acGAAAATGTTTGCATTGAAATTGGTCCTTCAGAGCAAGGTGAACCTAAT
TCAGACACAGTATACGAAAACTAATAAAACAATCTCGTAAGAATATCGAC
CAGTCTCGTACCGAGAGCCACTTACACCgctttttgatttaatttatgAA
TGTGATATCACCATTTGCTCTCACAATCGTAAAAAGCGAACAAAGAGACT
GGATACTAGCTTTTATTTCAGCTTGAAAATAGTTTGGTGTAAATGGGTCC
ACCTGATAAAGTTGAATTGGGTCTGAAATGAACGTGTAGATCAGACTTAG
ACGCTCGCTTGAAGAAGATTGAGTTCTGGGTTTAATCCATGGGATGTGAG
GGTTTTCTGATTTTGATCTAGAAGTTTTCTCTTTGTAATACAGTAGATTC
TCTTTAGTTCGAACCTTTAAAACTATAAAGTCTCCTTAACTCGAGCAAGT
TTTATGGTCACTTCAGTTAACAATGCCTTATTACCTATAAACCTTACTTT
ATAATTCAAAATTTCCTATGAACGTTGCAACGCTGTCCCATAGCCCCGAT
GGAACTTTTTCCCACAGTGGGGATGCAAATTTCTCTTTAATTCGAACTTC
TATAACTAAAATGTCTATTTAACTGGAGCAGGTTTGATGGTTCCTTTAGT
TAACAATGCCTTATAAACCTGTAAACCTTTCTTCATAACTCGAAATTTCC
TTAACTCGAACAAGTTTGTGTTCCCAACGATGCGTTTTTGAGTTATCGAC
GTTACAACGCTGTCTCATAGCCCCAATGAGACTTTTTCCCATAGTGGGGA
TGTAAAATTCTATCGAAAACCCAGTAAGGATAAAAAAATGTTGTATAGCG
AATCTGCAGCGGAAAAATATGCTGACAGTGCCAACACTGCCGGGCCTTTA
CACCACTTAGGCTTTCTTGTTCGAGTTAAGGAGAAATTAGAGTTATAGAG
GTTCGAGTTAAAGAGACTCCACTGTATGAAACTTTCAGCTCACAAAATTT
TATAGAATTTTAAGGCATTTCTTGTTTGAAAttagtttatttttaaaatt
cacaGCTTGAAGTTGGAGAGCAGAGTTGCAAACTCAATGGAACTAATATG
GACAGTTTCTTTTATAATATGTAAATAACATTATATCACAACTCTCCTac
tttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040105-exon-sc0002308-1491911889:22121..22628 | TCONS_00040105-exon-sc0002308-1491911889:22121..22628 | Clytia hemisphaerica | exon |
| TCONS_00040105-exon-sc0002308-1510915933:22121..22628 | TCONS_00040105-exon-sc0002308-1510915933:22121..22628 | Clytia hemisphaerica | exon |
| TCONS_00040105-exon-sc0002308-1575043694:22121..22628 | TCONS_00040105-exon-sc0002308-1575043694:22121..22628 | Clytia hemisphaerica | exon |
| TCONS_00040105-exon-sc0002308-1491911889:23024..23128 | TCONS_00040105-exon-sc0002308-1491911889:23024..23128 | Clytia hemisphaerica | exon |
| TCONS_00040105-exon-sc0002308-1510915933:23024..23128 | TCONS_00040105-exon-sc0002308-1510915933:23024..23128 | Clytia hemisphaerica | exon |
| TCONS_00040105-exon-sc0002308-1575043694:23024..23128 | TCONS_00040105-exon-sc0002308-1575043694:23024..23128 | Clytia hemisphaerica | exon |
| TCONS_00040105-exon-sc0002308-1491911889:25370..26576 | TCONS_00040105-exon-sc0002308-1491911889:25370..26576 | Clytia hemisphaerica | exon |
| TCONS_00040105-exon-sc0002308-1510915933:25370..26576 | TCONS_00040105-exon-sc0002308-1510915933:25370..26576 | Clytia hemisphaerica | exon |
| TCONS_00040105-exon-sc0002308-1575043694:25370..26576 | TCONS_00040105-exon-sc0002308-1575043694:25370..26576 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002308 | supercontig | sc0002308:22121..26576 + |
Blast
The following BLAST results are available for this feature:
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