TCONS_00040077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040077
Unique NameTCONS_00040077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040077 ID=TCONS_00040077|Name=TCONS_00040077|organism=Clytia hemisphaerica|type=transcript|length=783bp
agccgtccatattcatttgacaacgcaaaacgtcaaattgacgttatgag
ggggtgggggggttttcaaaagttaggtttgacgttataagaaatcaaag
gtatacctttttgtgaaaatcgcaGATATTTGTAACCACCAACCACACTA
TACTTTATAAGCTTTCGAAAACATATTTGTGTATGAagtacatgaaaatt
tgctgctcgcataatcccattggttcgcgctatgatatcattacatcaca
tttttattgtttgcgcgatcgagtgaaccacatcgcacaagtgggcaaag
aaggtggtacgCCTGCCTAAAGCACGGCACGGACCTAGCTCCAAGTGcag
cttttaatttctttttaaataaaggtcattagtGAAAAGAACACATACAC
GCACGGGTACAACCAAGTCGAACTTTGCGACAGAACGGGAAAACTTTGAC
GAAAAATGGCTACAACTTTTGGTATACATCAGTACATCGCTTGACGTTAT
CTgtggggggtgggggggttcagaggataacgtcaatttgacgttttgcg
ttgtcaaatgaatatggacgggtccCCTAACCTTGTGTTTGTGTTGCTCT
TGTAGTTCGCTTCCTTCCTGCCTTCTATATATTGTATTTTGTCATCTGTA
TATACCTAATTCTTTCAACGCTAAACTAGAATGTTTGAATTCGATATGAG
GGATTGCTTTTATAGAAACCTGAAACTTTGCAGCAACCACCCACAATCTT
TCCTTTTCTTCATTCATTGGCTGGACACTGGCT
Run BLAST on NCBI

transcript from alignment at sc0002301:5941..6723

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040077 ID=TCONS_00040077|Name=TCONS_00040077|organism=Clytia hemisphaerica|type=transcript|length=783bp|location=Sequence derived from alignment at sc0002301:5941..6723 (Clytia hemisphaerica)
AGCCAGTGTCCAGCCAATGAATGAAGAAAAGGAAAGATTGTGGGTGGTTG
CTGCAAAGTTTCAGGTTTCTATAAAAGCAATCCCTCATATCGAATTCAAA
CATTCTAGTTTAGCGTTGAAAGAATTAGGTATATACAGATGACAAAATAC
AATATATAGAAGGCAGGAAGGAAGCGAACTACAAGAGCAACACAAACACA
AGGTTAGGggacccgtccatattcatttgacaacgcaaaacgtcaaattg
acgttatcctctgaacccccccaccccccacAGATAACGTCAAGCGATGT
ACTGATGTATACCAAAAGTTGTAGCCATTTTTCGTCAAAGTTTTCCCGTT
CTGTCGCAAAGTTCGACTTGGTTGTACCCGTGCGTGTATGTGTTCTTTTC
actaatgacctttatttaaaaagaaattaaaagctgCACTTGGAGCTAGG
TCCGTGCCGTGCTTTAGGCAGGcgtaccaccttctttgcccacttgtgcg
atgtggttcactcgatcgcgcaaacaataaaaatgtgatgtaatgatatc
atagcgcgaaccaatgggattatgcgagcagcaaattttcatgtactTCA
TACACAAATATGTTTTCGAAAGCTTATAAAGTATAGTGTGGTTGGTGGTT
ACAAATATCtgcgattttcacaaaaaggtatacctttgatttcttataac
gtcaaacctaacttttgaaaacccccccaccccctcataacgtcaatttg
acgttttgcgttgtcaaatgaatatggacggct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024295XLOC_024295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040077-exon-sc0002301-1491911889:5941..6723TCONS_00040077-exon-sc0002301-1491911889:5941..6723Clytia hemisphaericaexon
TCONS_00040077-exon-sc0002301-1510915933:5941..6723TCONS_00040077-exon-sc0002301-1510915933:5941..6723Clytia hemisphaericaexon
TCONS_00040077-exon-sc0002301-1575043694:5941..6723TCONS_00040077-exon-sc0002301-1575043694:5941..6723Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002301supercontigsc0002301:5941..6723 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.06009	3.6642	9.88163	9.84927	9.39036	7.86227	5.21542	8.11596	6.24647	6.76485	5.87715	6.3599	5.60817	6.03859	2.38729	3.80385	2.94947	3.12444	2.68814	3.88226	3.68449	3.77046	1.34649	2.40349	5.11045	5.58288	4.26427	3.48805	3.98801	2.98674
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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