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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL80104_cuf0 >transcript:BL80104_cuf0-protein ID=transcript:BL80104_cuf0-protein|Name=transcript:BL80104_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=532bp
MXSTCGVRQGCNLSPLLFNLFINDLPQCFDCDECDPASLSYKSLNCLSWA
DDLALISLSKDGLQNCISKLEMYCNKWKLSVNVSKTKVLVFSKGATNISL
NKFYIYGKEINVTDSYTYLGIPLTSSGKFKTARKYLKTKAMRALFKLKSL
LYSERNIPIHLGLSLFDKFVRPIFLYGAELTCFDQTSKTVKYIVSKQIPQ
SSPKNVLSILLKKLGLEDSFPASIRKSVCSDSTHSYVIRFEKKIDKDKLL
RLASDLNLEKDNLVIENLRLPPHIPEFDIIDMNFHKFLLGVHGKSSNDGI
RGELGTFPIKIKAEIQIIKYWHRLLNLPQDTLLREAYDVLHSGNHDWVNH
VNDILNYNGFGHVWTNPRLYQTDMLTNQLRQRLQDIYIQEWHSSIQNNSK
LSIYSALKTRYGQEKYLASIHNFEIRRSITKIRICSHKLNIEAGRYRKIP
RDQRFCPFCPNEIEDESHFIMNCSRYKDKRSKLFTFISGCSNEFNALRSV
DRFNYILGGDNPYCVQIGIFIKECLDIRTSNV Run BLAST on NCBI mRNA from alignment at Sc0000014:4433609..4435907- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL80104_cuf0 ID=transcript:BL80104_cuf0|Name=transcript:BL80104_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2299bp|location=Sequence derived from alignment at Sc0000014:4433609..4435907- (Branchiostoma lanceolatum)
TGAAAATCGTTGTCAATTTTTTGGTCGCAGTGCTGTCGTAGAATGGGGGG
TATATTAAAGCTAATGTCCAAATAGATGTTGGAAGAGGAGACCGTACAAA
CTACAAAATGTTTTTCTAATAACACCAACAAATTAGTGTGTGTCAAGAGA
GGAGGAAAAAATTGAGACAGTTACGATCGTCCTTTCCAATATCCGGTTGA
AGCTTACAACTGAATGCAGCATTATAATACCACTTATGTNCTCCACCTGT
GGAGTAAGGCAGGGCTGCAACCTCAGCCCATTATTATTCAATCTCTTTAT
CAATGACCTGCCGCAATGCTTTGATTGTGATGAATGTGATCCAGCATCTT
TAAGTTACAAATCACTAAATTGTTTATCTTGGGCAGATGACCTTGCCTTG
ATCTCATTGTCCAAAGATGGGCTCCAGAATTGTATAAGTAAGCTGGAAAT
GTATTGCAACAAATGGAAACTAAGTGTGAATGTATCTAAAACGAAGGTGC
TTGTTTTCTCAAAAGGCGCCACAAACATATCATTAAATAAATTCTATATA
TACGGTAAAGAAATAAACGTTACCGACAGTTATACTTACCTTGGTATTCC
CCTGACGTCTTCGGGTAAATTTAAAACTGCCAGAAAGTATTTAAAGACTA
AAGCCATGAGAGCATTATTCAAACTCAAGTCACTTCTATATTCTGAAAGA
AATATTCCAATTCACTTAGGGCTCAGCCTATTTGACAAATTTGTACGGCC
TATATTTTTATATGGAGCCGAACTAACATGTTTCGACCAAACCTCTAAAA
CAGTGAAATATATTGTATCTAAACAAATTCCTCAATCTTCTCCAAAAAAC
GTACTCTCTATTCTTTTAAAGAAACTTGGTCTGGAGGATAGTTTTCCTGC
AAGTATTAGAAAAAGTGTCTGTTCAGACTCCACCCATTCTTATGTGATTC
GTTTTGAGAAAAAAATAGACAAAGATAAATTACTCAGGCTGGCGTCTGAC
CTAAATTTAGAAAAAGACAACTTAGTAATTGAAAATTTACGTCTTCCTCC
ACATATACCAGAATTTGATATTATTGATATGAATTTCCATAAATTTTTAC
TCGGTGTGCATGGAAAATCATCCAATGACGGTATCCGTGGCGAATTAGGA
ACATTCCCAATCAAGATTAAGGCCGAGATACAAATTATCAAATACTGGCA
TCGTTTATTAAATTTACCCCAAGATACCCTGTTACGTGAAGCTTACGACG
TTCTACATTCTGGTAATCATGACTGGGTGAACCATGTTAATGATATTCTT
AACTATAACGGGTTTGGGCATGTATGGACAAACCCTAGACTATATCAGAC
CGATATGTTAACCAACCAGTTACGACAACGTCTGCAGGATATATATATAC
AAGAATGGCATAGTTCTATTCAAAACAATTCAAAACTGTCCATTTATTCC
GCCTTAAAGACAAGATATGGACAAGAAAAGTATCTCGCAAGCATACATAA
TTTTGAAATTCGTAGATCAATTACAAAGATAAGAATATGTAGCCATAAAT
TGAACATTGAAGCTGGAAGGTATCGTAAAATTCCCCGTGATCAAAGGTTT
TGTCCATTCTGCCCAAATGAAATTGAAGATGAAAGTCACTTTATCATGAA
TTGTTCAAGATATAAGGATAAACGCTCAAAGCTATTCACCTTTATATCCG
GTTGTTCAAATGAATTCAATGCGCTCCGTTCTGTCGATAGATTCAATTAC
ATACTAGGAGGTGATAATCCTTACTGTGTACAGATAGGTATATTCATCAA
AGAATGTTTGGACATTAGAACAAGCAATGTATAAGTATATCACATGCGAT
ATTTCGATATGTTGCCCTATCCCATATGATTGTATGTAATCAAACTCATT
TGTATGCACTTATTCGTTTGTATGTATGTATGTAGTAGACCTTACGAAAG
TCGCTGTGCTTTTGTTGTGTCAATAAAGATCTCTCTTTGTAACTATAATG
CACTAAATGCAATTTTAGTTTTTACTGTTTACTTTTACTGTTAGCACGCT
GTGAGCCATGCCGCTTTGGCAAGAAGGAATTATGATATTATAATAATAAC
AAACAATCTATTGCAATTAGGACTTCGGGGATATTTGGCAATGTATGATA
TATTGGAAATATGGTCACATAGTTGTTTCAATTATTAATTGGCGAAGTTT
AAACTATCAATCAATCATATAATAGAAAAGGGGACGGATTTTGGTACTGT
GACCTTTTCCTGCTGTTATAGAAAATGATATAAAACTAAATTTTATAGA Coding sequence (CDS) from alignment at Sc0000014:4433609..4435907- >transcript:BL80104_cuf0 ID=transcript:BL80104_cuf0|Name=transcript:BL80104_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1599bp|location=Sequence derived from alignment at Sc0000014:4433609..4435907- (Branchiostoma lanceolatum)
ATGTNCTCCACCTGTGGAGTAAGGCAGGGCTGCAACCTCAGCCCATTATT
ATTCAATCTCTTTATCAATGACCTGCCGCAATGCTTTGATTGTGATGAAT
GTGATCCAGCATCTTTAAGTTACAAATCACTAAATTGTTTATCTTGGGCA
GATGACCTTGCCTTGATCTCATTGTCCAAAGATGGGCTCCAGAATTGTAT
AAGTAAGCTGGAAATGTATTGCAACAAATGGAAACTAAGTGTGAATGTAT
CTAAAACGAAGGTGCTTGTTTTCTCAAAAGGCGCCACAAACATATCATTA
AATAAATTCTATATATACGGTAAAGAAATAAACGTTACCGACAGTTATAC
TTACCTTGGTATTCCCCTGACGTCTTCGGGTAAATTTAAAACTGCCAGAA
AGTATTTAAAGACTAAAGCCATGAGAGCATTATTCAAACTCAAGTCACTT
CTATATTCTGAAAGAAATATTCCAATTCACTTAGGGCTCAGCCTATTTGA
CAAATTTGTACGGCCTATATTTTTATATGGAGCCGAACTAACATGTTTCG
ACCAAACCTCTAAAACAGTGAAATATATTGTATCTAAACAAATTCCTCAA
TCTTCTCCAAAAAACGTACTCTCTATTCTTTTAAAGAAACTTGGTCTGGA
GGATAGTTTTCCTGCAAGTATTAGAAAAAGTGTCTGTTCAGACTCCACCC
ATTCTTATGTGATTCGTTTTGAGAAAAAAATAGACAAAGATAAATTACTC
AGGCTGGCGTCTGACCTAAATTTAGAAAAAGACAACTTAGTAATTGAAAA
TTTACGTCTTCCTCCACATATACCAGAATTTGATATTATTGATATGAATT
TCCATAAATTTTTACTCGGTGTGCATGGAAAATCATCCAATGACGGTATC
CGTGGCGAATTAGGAACATTCCCAATCAAGATTAAGGCCGAGATACAAAT
TATCAAATACTGGCATCGTTTATTAAATTTACCCCAAGATACCCTGTTAC
GTGAAGCTTACGACGTTCTACATTCTGGTAATCATGACTGGGTGAACCAT
GTTAATGATATTCTTAACTATAACGGGTTTGGGCATGTATGGACAAACCC
TAGACTATATCAGACCGATATGTTAACCAACCAGTTACGACAACGTCTGC
AGGATATATATATACAAGAATGGCATAGTTCTATTCAAAACAATTCAAAA
CTGTCCATTTATTCCGCCTTAAAGACAAGATATGGACAAGAAAAGTATCT
CGCAAGCATACATAATTTTGAAATTCGTAGATCAATTACAAAGATAAGAA
TATGTAGCCATAAATTGAACATTGAAGCTGGAAGGTATCGTAAAATTCCC
CGTGATCAAAGGTTTTGTCCATTCTGCCCAAATGAAATTGAAGATGAAAG
TCACTTTATCATGAATTGTTCAAGATATAAGGATAAACGCTCAAAGCTAT
TCACCTTTATATCCGGTTGTTCAAATGAATTCAATGCGCTCCGTTCTGTC
GATAGATTCAATTACATACTAGGAGGTGATAATCCTTACTGTGTACAGAT
AGGTATATTCATCAAAGAATGTTTGGACATTAGAACAAGCAATGTATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000014 | genome | Sc0000014:4433609..4435907 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL80104_cuf0 |
| Biotype | protein_coding |
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