TCONS_00039631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039631
Unique NameTCONS_00039631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039631 ID=TCONS_00039631|Name=TCONS_00039631|organism=Clytia hemisphaerica|type=transcript|length=594bp
ACAGAGGagtggttgttgtagttgtgGTAGGCGGAGGCGtggttgttgtg
gttgttgttgtagtaGGCGGAGTAGTGGTTGCTGTAGTTGTGGTAGGCGG
AGAGGTAATTGTTGTTGTTTTAGTAGGTGAAGGAGTGGTTGTCGCAGTTG
TGGTAGGCGGGGGCGTACTTGTTGTAGTAGTTGTAGTAGGCGGAGGCGTT
GTTGTTGTAGTTGCGGTAGGCGTAGGCGTGGTTGTTGTAGTTAGAGTAGG
CGGAGGGCCGGTGGCTGTAGTTGTTGTTGTAGTAGGCGGGGAAGTGTTTG
TTGTAGTTGTTGTAGTAGGCGGGGAAGTGTTTGTTGTAGTTGTTGTAGGC
TTAAGCGTTGTTTTTGCAGCTGTTGTAGGCAGTGGCGTGGTTGTTGTACG
CTGAAACTTGGTTGTTGTACTTTTAGTAAGCCAGTTCCAGGTTGTTGTGG
TTGTGGTAAGCTGTGGAGGTGTAGTTGTGGTAGGTGGAAATGTGGTAGGT
GGAAATGTTGCTgctgttattgttttttttgtactttgaagCTCTTGCAT
ATCATTTCTTTCTTCTCCTATCTGCAGCACAGCTCGTGTCTCAT
Run BLAST on NCBI

transcript from alignment at sc0002153:18885..20117-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039631 ID=TCONS_00039631|Name=TCONS_00039631|organism=Clytia hemisphaerica|type=transcript|length=1233bp|location=Sequence derived from alignment at sc0002153:18885..20117- (Clytia hemisphaerica)
ACAGAGGAGTGGTTGTTGTAGTTGTGGTAGGCGGAGGCGTGGTTGTTGTG
GTTGTTGTTGTAGTAGGCGGAGTAGTGGTTGCTGTAGTTGTGGTAGGCGG
AGAGGTAATTGTTGTTGTTTTAGTAGGTGAAGGAGTGGTTGTCGCAGTTG
TGGTAGGCGGGGGCGTACTTGTTGTAGTAGTTGTAGTAGGCGGAGGCGTT
GTTGTTGTAGTTGCGGTAGGCGTAGGCGTGGTTGTTGTAGTTAGAGTAGG
CGGAGGGCCGGTGGCTGTAGTTGTTGTTGTAGTAGGCGGGGAAGTGTTTG
TTGTAGTTGTTGTAGGCTTAAGCGTTGTTTTTGCAGCTGTTGTAGACAGT
GGCGTGGTTGTCGTAGTTGTGGTAGGCGGAGGCGTGGTTGTTGTTGTAGT
AAGCGGAGTGGTGGTTGCTGTAGTTGTGGTAGGCGGAGACGTAATTGTTG
TTGTTTTAGTAGGTGAAGGAGTGGTTGTTGTAGTTTTGGTAGGCGGGGGC
TTGCTTGTTGTAGTAGTTGTAGTAGGCGGAGGCGTTGTTGTTGTAGTTGC
GGTAGGCGGAGGCGTGGTTGTTGTAGTTAGAGTAGGCGGAGGGCCGGTGG
CTGTAGTTGTTGTTGTAGTAGGCGGGGAAGTGTTTGTTGTAGTTGTTGTA
GGCTTAAGCGTTGTTTTTGCAGCTGTTGTAGACAGTGGCGTGGTTGTCGT
AGTTGTGGTAGGCGGAGGCGTGGTTGTTGTTGTAGTAAGCGGAGTGGTGG
TTGCTGTAGTTGTGGTAGGCGGAGACGTAATTGTTGTTGTTTTAGTAGGT
GAAGGAGTGGTTGTTGTAGTTTTGGTAGGCGGGGGCTTGCTTGTTGTAGT
AGTTGTAGTAGGCGGAGGCGTTGTTGTTGTAGTTGCGGTAGGCGGAGGCG
TGGTTGTTGTAGTTGTAGTAGGCGGAGGGCCGGTTGCTGTAGTTGTTGTT
GTAGTAGGCGGGGAAGTGTTTGTTGTAGTTGTTGTAGGCTTAAGCGTTGT
TTTTGCAGCTGTTGTAGGCAGTGGCGTGGTTGTTGTACGCTGAAACTTGG
TTGTTGTACTTTTAGTAAGCCAGTTCCAGGTTGTTGTGGTTGTGGTAAGC
TGTGGAGGTGTAGTTGTGGTAGGTGGAAATGTGGTAGGTGGAAATGTTGC
TGCTGTTATTGTTTTTTTTGTACTTTGAAGCTCTTGCATATCATTTCTTT
CTTCTCCTATCTGCAGCACAGCTCGTGTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023943XLOC_023943Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039631-exon-sc0002153-1575043694:19803..20117TCONS_00039631-exon-sc0002153-1575043694:19803..20117Clytia hemisphaericaexon
TCONS_00039631-exon-sc0002153-1575043694:18885..19163TCONS_00039631-exon-sc0002153-1575043694:18885..19163Clytia hemisphaericaexon
TCONS_00039631-exon-sc0002153-1510915933:19803..20117TCONS_00039631-exon-sc0002153-1510915933:19803..20117Clytia hemisphaericaexon
TCONS_00039631-exon-sc0002153-1510915933:18885..19163TCONS_00039631-exon-sc0002153-1510915933:18885..19163Clytia hemisphaericaexon
TCONS_00039631-exon-sc0002153-1491911889:19803..20117TCONS_00039631-exon-sc0002153-1491911889:19803..20117Clytia hemisphaericaexon
TCONS_00039631-exon-sc0002153-1491911889:18885..19163TCONS_00039631-exon-sc0002153-1491911889:18885..19163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002153supercontigsc0002153:18885..20117 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.626651	0.391734	0.0182525	0	2.86162	0.891474	3.53079	4.18714	1.6597	3.40753	1.69903	1.56849	0.750059	0.955766	0.433917	0.200892	0.646885	0.416181	0.516448	0	0.390236	1.41929	1.54088	1.24828	16.2092	10.0364	0.745615	0	1.60945	2.97086
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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