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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL83820_cuf0 >transcript:BL83820_cuf0-protein ID=transcript:BL83820_cuf0-protein|Name=transcript:BL83820_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=497bp
EHDDKKQWKCDQCDFSTRWKKSIQEHIAGHNGDKPYMCEECGYRTAKKSN
LSLHTRTHTAEKPYKCDQCNFSSARQNNLRRHMLKHSGEKPYRCNVCDYS
AAQKTDLDRHMAKHTGIKPYMCGECEYRTVNRSSLRAHMKRHTGEKPFKC
DQCDYSTVRKVNLDRHMAKHTGDKPYSCGECGFRTAYGSCLSEHMRKHTG
ERPYKCDQCDYSTARKSNLDQHTLRHSGEKPYMCGECGYRTAGRSYLAIH
MRTHTGFKPYKCDQCDYSAAQKCSLDLHMAKHTGDKPYMCDECGYRAALR
SHLTAHMQKHTDKKPYKCDQCDYSAAHKSILIQHTAKHTKPYMCGECGFR
TVGKSLLSQHMRTHTGEKPYKCDQCDYSASQKGNLDRHVSKHTGEKPYMC
EECGYGTTDRYFLSLHMRKHTGDRPYKCDQCDYSASQNSNLIKHMTRHTG
EKPFKCDKCDFSAARQSSLSRHMLRHTDHLTNTACVGSAGTGLADMT Run BLAST on NCBI mRNA from alignment at Sc0000004:5769735..5771305- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL83820_cuf0 ID=transcript:BL83820_cuf0|Name=transcript:BL83820_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1571bp|location=Sequence derived from alignment at Sc0000004:5769735..5771305- (Branchiostoma lanceolatum)
AGAACATGATGACAAAAAACAATGGAAGTGCGACCAATGTGACTTTTCTA
CACGGTGGAAAAAGAGCATACAGGAACACATCGCGGGCCACAATGGTGAC
AAACCCTACATGTGTGAAGAGTGTGGATACAGGACGGCTAAGAAATCTAA
TCTGTCCCTACACACAAGAACACATACAGCGGAGAAACCCTACAAATGTG
ACCAATGCAACTTTTCTTCAGCAAGACAGAATAACCTACGTCGACACATG
CTAAAACACAGTGGGGAGAAGCCATACAGATGTAATGTGTGCGACTATTC
TGCAGCACAAAAGACTGATTTAGACAGACACATGGCTAAACACACTGGAA
TAAAACCCTACATGTGTGGAGAGTGCGAGTACAGGACGGTGAATAGGTCT
AGCCTACGTGCACATATGAAAAGACATACAGGCGAGAAACCATTCAAGTG
TGACCAGTGCGATTATTCAACTGTAAGGAAAGTCAATTTAGACCGACACA
TGGCTAAACACACGGGAGACAAACCCTATTCGTGTGGAGAATGCGGGTTC
AGGACGGCTTATGGGTCTTGTCTATCAGAACATATGAGAAAGCATACAGG
TGAGAGACCCTACAAATGTGACCAGTGCGACTATTCAACTGCTAGAAAAA
GCAATTTAGACCAACACACGCTACGACACAGCGGTGAAAAACCCTACATG
TGCGGGGAGTGCGGATACAGGACGGCTGGTAGGTCTTACCTAGCCATACA
TATGAGAACACATACAGGTTTTAAACCATATAAGTGTGACCAGTGCGACT
ATTCTGCTGCACAGAAATGTTCTTTAGACCTACACATGGCGAAACACACT
GGAGACAAACCCTACATGTGTGATGAGTGCGGGTACAGAGCGGCTTTAAG
GTCCCATTTAACCGCACATATGCAAAAACATACGGACAAGAAACCGTACA
AATGTGACCAGTGTGACTATTCTGCTGCACATAAGAGCATCTTAATCCAA
CATACTGCTAAACACACAAAACCATACATGTGCGGGGAGTGTGGATTCAG
GACGGTTGGAAAGTCTCTCTTGTCTCAACACATGAGAACTCATACCGGTG
AAAAACCTTATAAATGTGACCAGTGTGACTATTCTGCTTCTCAGAAAGGC
AATCTAGACAGACATGTGTCTAAACACACCGGAGAGAAACCCTACATGTG
TGAAGAATGCGGGTACGGAACGACGGACAGGTACTTTCTTTCCCTACATA
TGAGAAAACATACAGGAGACAGACCCTACAAATGTGACCAGTGCGACTAT
TCTGCTTCTCAAAATTCTAATCTAATTAAGCACATGACTAGACACACTGG
TGAGAAACCCTTCAAGTGTGACAAGTGCGACTTTTCTGCTGCGAGGCAAA
GTAGTTTGAGCCGCCACATGCTGAGACACACTGATCACTTAACAAACACT
GCATGTGTGGGAAGTGCGGGTACAGGGCTGGCAGATATGACCTGATAAAA
CATTTGAGAAAACATCAACTTGGTGGTAGCTGGATGACTTTATACACTTG
GATATATTGTTTAGTCCGACC Coding sequence (CDS) from alignment at Sc0000004:5769735..5771305- >transcript:BL83820_cuf0 ID=transcript:BL83820_cuf0|Name=transcript:BL83820_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1494bp|location=Sequence derived from alignment at Sc0000004:5769735..5771305- (Branchiostoma lanceolatum)
GAACATGATGACAAAAAACAATGGAAGTGCGACCAATGTGACTTTTCTAC
ACGGTGGAAAAAGAGCATACAGGAACACATCGCGGGCCACAATGGTGACA
AACCCTACATGTGTGAAGAGTGTGGATACAGGACGGCTAAGAAATCTAAT
CTGTCCCTACACACAAGAACACATACAGCGGAGAAACCCTACAAATGTGA
CCAATGCAACTTTTCTTCAGCAAGACAGAATAACCTACGTCGACACATGC
TAAAACACAGTGGGGAGAAGCCATACAGATGTAATGTGTGCGACTATTCT
GCAGCACAAAAGACTGATTTAGACAGACACATGGCTAAACACACTGGAAT
AAAACCCTACATGTGTGGAGAGTGCGAGTACAGGACGGTGAATAGGTCTA
GCCTACGTGCACATATGAAAAGACATACAGGCGAGAAACCATTCAAGTGT
GACCAGTGCGATTATTCAACTGTAAGGAAAGTCAATTTAGACCGACACAT
GGCTAAACACACGGGAGACAAACCCTATTCGTGTGGAGAATGCGGGTTCA
GGACGGCTTATGGGTCTTGTCTATCAGAACATATGAGAAAGCATACAGGT
GAGAGACCCTACAAATGTGACCAGTGCGACTATTCAACTGCTAGAAAAAG
CAATTTAGACCAACACACGCTACGACACAGCGGTGAAAAACCCTACATGT
GCGGGGAGTGCGGATACAGGACGGCTGGTAGGTCTTACCTAGCCATACAT
ATGAGAACACATACAGGTTTTAAACCATATAAGTGTGACCAGTGCGACTA
TTCTGCTGCACAGAAATGTTCTTTAGACCTACACATGGCGAAACACACTG
GAGACAAACCCTACATGTGTGATGAGTGCGGGTACAGAGCGGCTTTAAGG
TCCCATTTAACCGCACATATGCAAAAACATACGGACAAGAAACCGTACAA
ATGTGACCAGTGTGACTATTCTGCTGCACATAAGAGCATCTTAATCCAAC
ATACTGCTAAACACACAAAACCATACATGTGCGGGGAGTGTGGATTCAGG
ACGGTTGGAAAGTCTCTCTTGTCTCAACACATGAGAACTCATACCGGTGA
AAAACCTTATAAATGTGACCAGTGTGACTATTCTGCTTCTCAGAAAGGCA
ATCTAGACAGACATGTGTCTAAACACACCGGAGAGAAACCCTACATGTGT
GAAGAATGCGGGTACGGAACGACGGACAGGTACTTTCTTTCCCTACATAT
GAGAAAACATACAGGAGACAGACCCTACAAATGTGACCAGTGCGACTATT
CTGCTTCTCAAAATTCTAATCTAATTAAGCACATGACTAGACACACTGGT
GAGAAACCCTTCAAGTGTGACAAGTGCGACTTTTCTGCTGCGAGGCAAAG
TAGTTTGAGCCGCCACATGCTGAGACACACTGATCACTTAACAAACACTG
CATGTGTGGGAAGTGCGGGTACAGGGCTGGCAGATATGACCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000004 | genome | Sc0000004:5769735..5771305 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL83820_cuf0 |
| Biotype | protein_coding |
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