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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038325 ID=TCONS_00038325|Name=TCONS_00038325|organism=Clytia hemisphaerica|type=transcript|length=985bp
GTTACGTAATCCGATATATCAACATCTTAAGATCAAAGCAACGAGCTCCT
TCGGCCAATCTTACAGAGCCTTCCTTACACATCTGGAAATCAAACAGGTA
GAGACGTACTTCTTCAAGAAAGCCACTGCTGAAATCATTCAATCCATTCC
ACCCAAAAAATACGAACCAATCGGTGTAAACAAAGATGGTATCTTGTACC
ATCAAACCAGGTCACAACCATCGGTAAATTCACTGAAGCAATGCTGGATT
TATCTACAACATCATTCTGTGTTCAACTCGTGGATCGTTATTAACCTATC
GCCTTCAGGATCATATCAGATGTTCATTGGAACAGGCGTGTCTCGAAACA
TTCAGGAGTGGAAACCACTTTACGTGAAGTCAACAAAAGGCTTATATCAA
TGACGGAAGAAATACTGTCAAAATCATCTTGAGGAGATGTCAAAGATGCA
AGTCCCTTGAAAAAATCAATTCAAGTTTCAATGGATCAATGGATCCAATA
CCTCAATCAAGAATCAATTGAAGTGAAGCTTCAAAACGATTGCGTAAAGT
AATTTTGTGAAACCTCTGTTCGAGATTTGGTTCTCATTCATTCAGTAAAT
GATTGCGATCTAATGAAGGACATTGTATGAAATGTCCCAAACTGTTGATA
CTGGTTTTACCTGACTGGAGAAAATTTTGTTGGTCTTGGCTGGGAGTGTA
ATGCGAGCTTGGTGGCTCTGATGTATTTTTAGTAAATTTTCAGTAAAACC
AAAACATCTCAGTCCCTAACCTCAGTATCTCTTTTCACAATCTTCTGTTT
CCATGGTTTCAATAACTTTTCAATGCTTTGCGTTTTATTAGCTTCTGTTT
TCATTTACTTTTTTTACGCATTTCATTTTATTTTCAATACGTGTGTTGTC
ATTATTTTTCTATTGTTTCATTATGTAATCTTTTGTTCATTTTTTGTCAG
TTTTTTTTTATCAAAATCGAGACACTTTTTCAAGG Run BLAST on NCBI protein sequence of TCONS_00038325-protein >TCONS_00038325-protein ID=TCONS_00038325-protein|Name=TCONS_00038325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
LRNPIYQHLKIKATSSFGQSYRAFLTHLEIKQVETYFFKKATAEIIQSIP
PKKYEPIGVNKDGILYHQTRSQPSVNSLKQCWIYLQHHSVFNSWIVINLS
PSGSYQMFIGTGVSRNIQEWKPLYVKSTKGLYQ Run BLAST on NCBI transcript from alignment at sc0001825:36437..37421 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038325 ID=TCONS_00038325|Name=TCONS_00038325|organism=Clytia hemisphaerica|type=transcript|length=985bp|location=Sequence derived from alignment at sc0001825:36437..37421 (Clytia hemisphaerica)
CCTTGAAAAAGTGTCTCGATTTTGATAAAAAAAAACTGACAAAAAATGAA
CAAAAGATTACATAATGAAACAATAGAAAAATAATGACAACACACGTATT
GAAAATAAAATGAAATGCGTAAAAAAAGTAAATGAAAACAGAAGCTAATA
AAACGCAAAGCATTGAAAAGTTATTGAAACCATGGAAACAGAAGATTGTG
AAAAGAGATACTGAGGTTAGGGACTGAGATGTTTTGGTTTTACTGAAAAT
TTACTAAAAATACATCAGAGCCACCAAGCTCGCATTACACTCCCAGCCAA
GACCAACAAAATTTTCTCCAGTCAGGTAAAACCAGTATCAACAGTTTGGG
ACATTTCATACAATGTCCTTCATTAGATCGCAATCATTTACTGAATGAAT
GAGAACCAAATCTCGAACAGAGGTTTCACAAAATTACTTTACGCAATCGT
TTTGAAGCTTCACTTCAATTGATTCTTGATTGAGGTATTGGATCCATTGA
TCCATTGAAACTTGAATTGATTTTTTCAAGGGACTTGCATCTTTGACATC
TCCTCAAGATGATTTTGACAGTATTTCTTCCGTCATTGATATAAGCCTTT
TGTTGACTTCACGTAAAGTGGTTTCCACTCCTGAATGTTTCGAGACACGC
CTGTTCCAATGAACATCTGATATGATCCTGAAGGCGATAGGTTAATAACG
ATCCACGAGTTGAACACAGAATGATGTTGTAGATAAATCCAGCATTGCTT
CAGTGAATTTACCGATGGTTGTGACCTGGTTTGATGGTACAAGATACCAT
CTTTGTTTACACCGATTGGTTCGTATTTTTTGGGTGGAATGGATTGAATG
ATTTCAGCAGTGGCTTTCTTGAAGAAGTACGTCTCTACCTGTTTGATTTC
CAGATGTGTAAGGAAGGCTCTGTAAGATTGGCCGAAGGAGCTCGTTGCTT
TGATCTTAAGATGTTGATATATCGGATTACGTAAC Coding sequence (CDS) from alignment at sc0001825:36437..37421 >TCONS_00038325 ID=TCONS_00038325|Name=TCONS_00038325|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0001825:36437..37421 (Clytia hemisphaerica)
TCATTGATATAAGCCTTTTGTTGACTTCACGTAAAGTGGTTTCCACTCCT
GAATGTTTCGAGACACGCCTGTTCCAATGAACATCTGATATGATCCTGAA
GGCGATAGGTTAATAACGATCCACGAGTTGAACACAGAATGATGTTGTAG
ATAAATCCAGCATTGCTTCAGTGAATTTACCGATGGTTGTGACCTGGTTT
GATGGTACAAGATACCATCTTTGTTTACACCGATTGGTTCGTATTTTTTG
GGTGGAATGGATTGAATGATTTCAGCAGTGGCTTTCTTGAAGAAGTACGT
CTCTACCTGTTTGATTTCCAGATGTGTAAGGAAGGCTCTGTAAGATTGGC
CGAAGGAGCTCGTTGCTTTGATCTTAAGATGTTGATATATCGGATTACGT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038325-exon-sc0001825-1491911889:36437..37421 | TCONS_00038325-exon-sc0001825-1491911889:36437..37421 | Clytia hemisphaerica | exon |
| TCONS_00038325-exon-sc0001825-1510915933:36437..37421 | TCONS_00038325-exon-sc0001825-1510915933:36437..37421 | Clytia hemisphaerica | exon |
| TCONS_00038325-exon-sc0001825-1575043694:36437..37421 | TCONS_00038325-exon-sc0001825-1575043694:36437..37421 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001825 | supercontig | sc0001825:36437..37421 . |
Blast
The following BLAST results are available for this feature:
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