TCONS_00038302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038302
Unique NameTCONS_00038302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038302 ID=TCONS_00038302|Name=TCONS_00038302|organism=Clytia hemisphaerica|type=transcript|length=1280bp
GTGtctcttgcaaatcattatctAATGTAATCAAATGGTGCCAAACTGAT
CACACTGGGTCACACAGCAGGGCGTATTTACAGTGCATTTGTatggagaa
aacctttttgcAGAGTTCAACATTCTGAATGTGTTGATGAAACAACCATT
CCATCCATATATTCAGCTGAGACATACGTAATATTTGGATCACACTGGGT
CACACAGCAGGGCGTACTTACAGTGCACTTGTatggagaaaacctttttg
cAGAGTTCAACATTCTGAATGTGCTGATGAaacgggacaagctggagttt
ttacaagctcttatgtgatttggttggtcgttaagatgtaataaaaacaa
tcttattactttttctaaagaacgcgtcatttctattactttaaatgacc
aattagtgaagtatcttataaaaactccagctcatcccgatGAAACAACC
ATTCCATCCATATATTCAGCTGAGACATACGTAATATTTGGATCACACTG
GGTCACACAGCAGGACGTATTTACAGTGCACTTGtatcgaaaaaactttt
ttccagaGTTCAACATTCTGAATGTGCTGATGAAACAACCATTCCATCCA
TATATTCAGCTGAGACATACGTAATATTAGcagatttctttcaaacaaag
ATGGTACAGCCATAATAACACCTTCAACTATGAATGCAAAAGGGCATCAA
CAGAGTTATCCAACCACGTTTGGGACCTGCAAATCAAAAACATACAACCA
AAATTATCATGGGAGATTATCGACCACGCCCGCTCGTATGTCAACGGCTT
GGTAAACTGCAACCTCTGTCTCACAGAAAAATTTCACTTCATTACATCAG
AGCTTCATCTCGTACAAAAGATCAGAATTTATTTCCACAAGTCGCCATAA
CAACATAGATTTAATCTGAAGACCTTCAAATCGGTTCCCCCGGATgaatc
ataaattttattttcaatatgttttaatcattgtttttattacaGTTTTA
TTACACAAATTATCcagtttttcaactttttacgtagaatttcaaatttt
caatcattactgTACATATGATTAGTGTGTAAGCACAAAACTCTGAGTGA
TGTATTCTTTAACTTTTAATGGAAGATAACTTTTNTGCACAAATTATCca
gtttttcaactttttacgtagaatttcaaattttcaatcattactgTACA
TATGATTAGTGTGTAAGCACAAAACTCTGAGTGATGTATTCTTTAACTTT
TAatggaagataacttttaaaatatcgATG
Run BLAST on NCBI

transcript from alignment at sc0001822:10012..12359-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038302 ID=TCONS_00038302|Name=TCONS_00038302|organism=Clytia hemisphaerica|type=transcript|length=2348bp|location=Sequence derived from alignment at sc0001822:10012..12359- (Clytia hemisphaerica)
GTGTCTCTTGCAAATCATTATCTAATGTAATCAAATGGTGCCAAACTGTA
AGTGATTAGTTAATCATATCTTGAGCTTACTAGATTCAAACTCTTTAAAA
AATCATTGAACGTCGGACTTGGTGATTTTGTAAATTTGTTTAAAGCAAAT
AATTATCCATTTTAGGATCACACTGGGTCACACAGCAGGGCGTATTTACA
GTGCATTTGTATGGAGAAAACCTTTTTGCAGAGTTCAACATTCTGAATGT
GTTGATGAAACAACCATTCCATCCATATATTCAGCTGAGACATACGTAAT
ATTTGGTAAGGAAAGGTTTATTTTTTTCAACCAGTACTTCCTATAGAATA
CATGTCTGTCAGTGATGAGTAGGTTTTATCATATTTCATAACTCATCTTA
GACAAATTTGTAAAGGGTTCAGTGTCTCTTGCAAATCATTATCTAATGTA
ATCAAATGGTGCCAAACTGTAAATGATTAGTTAATCATATCTTGAGCTTA
CTAGATTCAAACTCTTTAAAAAATTATTGAACGTCGGATTTAGTGATTTT
GTAAATTTGTTTAAAGCAAATAATTATCCATTTAAGGATCACACTGGGTC
ACACAGCAGGGCGTACTTACAGTGCACTTGTATGGAGAAAACCTTTTTGC
AGAGTTCAACATTCTGAATGTGCTGATGAAACGGGACAAGCTGGAGTTTT
TACAAGCTCTTATGTGATTTGGTTGGTCGTTAAGATGTAATAAAAACAAT
CTTATTACTTTTTCTAAAGAACGCGTCATTTCTATTACTTTAAATGACCA
ATTAGTGAAGTATCTTATAAAAACTCCAGCTCATCCCGATGAAACAACCA
TTCCATCCATATATTCAGCTGAGACATACGTAATATTTGGTAAGGAAAGG
TTTATTTTTGTCAACCAGTACTTCCTATAAAATACATGTCTGTCAGTGAT
GAGTAGGTTTNNNNNNNNNNNNNNNNATTTGTAAAGGGTGCAGTGTCTCT
TGCAAATCATTATCTAATGTAATCAAATGGTGCCAAACTGTAAGTGATTA
GTTAATCATATCTTGAGTTTACTAGGTTCAAACTCTTGAAAAATTATTGA
ACGTCGGACTTAGTGATTTTGTAAATTTGTTTAAAGCAAATAACTATTCA
TTTTAGGATCACACTGGGTCACACAGCAGGACGTATTTACAGTGCACTTG
TATCGAAAAAACTTTTTTCCAGAGTTCAACATTCTGAATGTGCTGATGAA
ACAACCATTCCATCCATATATTCAGCTGAGACATACGTAATATTAGGTAA
GAACTTGTTTATTTACGTCCACCAGGACTTCCTATAAAATACATTTCTGC
CAGTGATGAATTGTCTTAAATGTATTTCTAAAATCATCTTAAACAAATTT
GCCTCTTGCAAATCATTATCTAATGTAAAGTTACCAAATTGTAAGGGATT
GATTAATCATATTCCCAAAACTGTTCTATTTTTTGTTCAGAGCTTTTGAT
ACGATGCCACAGAGAGTAGATATCAATTTTCAATTATTTCATGGCTTTCT
TTCAAAATAAACTTCTGAAGGAGGTATAAATTAATTGCTGAAAGGGCAAT
CATAGATCGATTTATAGGGGAAATTTTTATTTTCATCGTTTTTATGGCAA
ACTCATCTTGTTCCAAAAATTGCTTTGAAAAATTGATGGTTTTTTTAGCA
GATTTCTTTCAAACAAAGATGGTACAGCCATAATAACACCTTCAACTATG
AATGCAAAAGGGCATCAACAGAGTTATCCAACCACGTTTGGGACCTGCAA
ATCAAAAACATACAACCAAAATTATCATGGGAGATTATCGACCACGCCCG
CTCGTATGTCAACGGCTTGGTAAACTGCAACCTCTGTCTCACAGAAAAAT
TTCACTTCATTACATCAGAGCTTCATCTCGTACAAAAGATCAGAATTTAT
TTCCACAAGTCGCCATAACAACATAGATTTAATCTGAAGACCTTCAAATC
GGTTCCCCCGGATGAATCATAAATTTTATTTTCAATATGTTTTAATCATT
GTTTTTATTACAGTTTTATTACACAAATTATCCAGTTTTTCAACTTTTTA
CGTAGAATTTCAAATTTTCAATCATTACTGTACATATGATTAGTGTGTAA
GCACAAAACTCTGAGTGATGTATTCTTTAACTTTTAATGGAAGATAACTT
TTNTGCACAAATTATCCAGTTTTTCAACTTTTTACGTAGAATTTCAAATT
TTCAATCATTACTGTACATATGATTAGTGTGTAAGCACAAAACTCTGAGT
GATGTATTCTTTAACTTTTAATGGAAGATAACTTTTAAAATATCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022913XLOC_022913Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038302-exon-sc0001822-1575043694:12313..12359TCONS_00038302-exon-sc0001822-1575043694:12313..12359Clytia hemisphaericaexon
TCONS_00038302-exon-sc0001822-1575043694:12055..12194TCONS_00038302-exon-sc0001822-1575043694:12055..12194Clytia hemisphaericaexon
TCONS_00038302-exon-sc0001822-1575043694:11471..11773TCONS_00038302-exon-sc0001822-1575043694:11471..11773Clytia hemisphaericaexon
TCONS_00038302-exon-sc0001822-1575043694:11064..11203TCONS_00038302-exon-sc0001822-1575043694:11064..11203Clytia hemisphaericaexon
TCONS_00038302-exon-sc0001822-1575043694:10012..10661TCONS_00038302-exon-sc0001822-1575043694:10012..10661Clytia hemisphaericaexon
TCONS_00038302-exon-sc0001822-1510915933:12313..12359TCONS_00038302-exon-sc0001822-1510915933:12313..12359Clytia hemisphaericaexon
TCONS_00038302-exon-sc0001822-1510915933:12055..12194TCONS_00038302-exon-sc0001822-1510915933:12055..12194Clytia hemisphaericaexon
TCONS_00038302-exon-sc0001822-1510915933:11471..11773TCONS_00038302-exon-sc0001822-1510915933:11471..11773Clytia hemisphaericaexon
TCONS_00038302-exon-sc0001822-1510915933:11064..11203TCONS_00038302-exon-sc0001822-1510915933:11064..11203Clytia hemisphaericaexon
TCONS_00038302-exon-sc0001822-1510915933:10012..10661TCONS_00038302-exon-sc0001822-1510915933:10012..10661Clytia hemisphaericaexon
TCONS_00038302-exon-sc0001822-1491911889:12313..12359TCONS_00038302-exon-sc0001822-1491911889:12313..12359Clytia hemisphaericaexon
TCONS_00038302-exon-sc0001822-1491911889:12055..12194TCONS_00038302-exon-sc0001822-1491911889:12055..12194Clytia hemisphaericaexon
TCONS_00038302-exon-sc0001822-1491911889:11471..11773TCONS_00038302-exon-sc0001822-1491911889:11471..11773Clytia hemisphaericaexon
TCONS_00038302-exon-sc0001822-1491911889:11064..11203TCONS_00038302-exon-sc0001822-1491911889:11064..11203Clytia hemisphaericaexon
TCONS_00038302-exon-sc0001822-1491911889:10012..10661TCONS_00038302-exon-sc0001822-1491911889:10012..10661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001822supercontigsc0001822:10012..12359 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57817	2.03124	0	0.306597	0	0.442143	1.07511	0.578139	0.978792	3.30424e-07	0.637948	0.451101	0.271361	0.42871	0.321905	0	0.0820284	0	0.830141	0.338354	0	0.688208	1.35971	0.810611	0.446458	2.89927	10.289	2.45565	1.53701	0.607953
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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