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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037652 ID=TCONS_00037652|Name=TCONS_00037652|organism=Clytia hemisphaerica|type=transcript|length=2075bp
gaagttttgaaattttttgaatttttgatcaattttttctaaatttattt
tCTGTTTAAGCTGAAGGAATGAAGGATTAGTTTGTTAATTAACATCCGTG
GTCTAAATTGAAAGATTGATCAGGAAACgcgttttcaaaaaaagactggg
aaCTGGATTGTCGAAATTCTCAGCGTCAAGGATAACTGAGGCACTGAGGC
GAGCGAACCTTCTTTTTTATATCTCCACGCTTTCACCCAGCTTTTTTACA
GGAAGGGCGAACTCTTGAAGGTCAACTTCTTCAAACAAGTAAGTATGACT
TGATTCATAGTGTAGTATTTCCTTTAGACAATGTAGAAGCTTTAAAAATT
CTGTTTAAATTTCCGTTCTCAATCCTCCATCTTCACTGATGGGTAAAGTG
AAAAGGAGTGACGATGAAAGTGGACCTGTGTTTTACCTAGGTTTCTTATG
TTTAGTGTAAAGGTGCAAAGTAGTTTGAAACTTTGTGGAATCTGCCCTAC
ACAGAAAACAGTTAGCATTCTAGAAGCCTGAAACTGAATTTTAGCCTGAG
TGCCAGGTGCTATGTTTTAACACATTTGTTGTTTGACAAGTTGTTTATTA
TGACACTGTTTGTtgtctatctatctattttgtcaaaatttaagaacaga
acttttattctttcatatttttatcAACCCTCTTTTGGATATGATTATGC
TAGACTTGATCAATCCAACTCCATCAAACAATTTAagtttcaattaaaaa
aattaaacaaacctAGGCGACAATTAGACATATATCACCTTcattgtata
tattctttatatcGTTTCAGTCAAACATTCACTAACGTAAATATTACTAA
AGTAGAAAAACCTCCTGGTTATTATTTATGTTTGACTTATACTCAGTGAC
TAAATGGAATGagtattttttatctttatgTTGGACATTTTGAACCTAGG
GGGGAGATAGACATATATCACCTTcattgtatatattctttatatcGTTT
CAGTCAAACATTCACTAACGTAAATATTACTAAAGTAGAAAAACCTCCTG
GTTATTATTTAACAATCAATAATGTTCCATTTaccttcaaaacataaatc
ccGGGTCAGAAAAATGTTGGAATAATTTTTTGATAGCCAAGCAGATCTTT
GAATCATCATTCGGTACacgtttttgtttacttaacccaccACACTGAGT
CCAGTTTGAGTTTCAGTCGAAATTCAGCAATGCAGTAGGGCCAATACCCC
TGAGGGCTGAAAGTAAGGTCTGGATTTAAGGTTAACGCATGGGGGCACAC
ATGTAACCAGATTTAGTTTGGCAAATCAAAGATGTGGCAAAGGATTTTGT
TGATTGCTGACTTGATATGGCAAAGTGTAATCCGTTTTTGAAAGTTATTC
CCTAATATACAATCCGAATTCAACTTTGAACAACAGAAGTCGATATTCAG
TAATCTTAagagtttgattaatttttggacctacctccgggtaccctggt
ggaggtcctataaattaacctttttccgtccgttcgtctgtctgTTACCT
TTAGCTTTTCTTGAGAtaggctcattagttttttctgattttcagctaaa
aaaatgtccaaaatgtgacggagcccgattttcgaagaaaaaaaatttcc
agtggaaaaactgtttttttggcattttcttgagattttaacattagttt
tttctgattttttgctcaaagatgcgtattaacaatgcccaaaatagtcc
cgctgctgaggtcaataaatgtttcatttcgtgacacacatcttagaact
aactttttttggtggaaactcgtgAATTAGtgtatgtagattccaaaatc
aaaaagtttccacgatattatcgtgcaagtaacgagtaattggcgatttt
ttcaaggcaaaattgcaaggcctggaaattcatgatttttgaggggtctt
caaattgaaaaaagacctatatcacatgatggagctcttcaaactgagca
aaaaagtgtattacaccaaagtcccaacttctctagatcaaaatttattg
gcctatttgtggtaaaaaactgatg Run BLAST on NCBI protein sequence of TCONS_00037652-protein >TCONS_00037652-protein ID=TCONS_00037652-protein|Name=TCONS_00037652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MTLFVVYLSILSKFKNRTFILSYFYQPSFGYDYARLDQSNSIKQFKFQLK
KLNKPRRQLDIYHLHCIYSLYRFSQTFTNVNITKVEKPPGYYLCLTYTQ Run BLAST on NCBI transcript from alignment at sc0001676:5880..7954 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037652 ID=TCONS_00037652|Name=TCONS_00037652|organism=Clytia hemisphaerica|type=transcript|length=2075bp|location=Sequence derived from alignment at sc0001676:5880..7954 (Clytia hemisphaerica)
catcagttttttaccacaaataggccaataaattttgatctagagaagtt
gggactttggtgtaatacacttttttgctcagtttgaagagctccatcat
gtgatataggtcttttttcaatttgaagacccctcaaaaatcatgaattt
ccaggccttgcaattttgccttgaaaaaatcgccaattactcgttacttg
cacgataatatcgtggaaactttttgattttggaatctacatacaCTAAT
Tcacgagtttccaccaaaaaaagttagttctaagatgtgtgtcacgaaat
gaaacatttattgacctcagcagcgggactattttgggcattgttaatac
gcatctttgagcaaaaaatcagaaaaaactaatgttaaaatctcaagaaa
atgccaaaaaaacagtttttccactggaaattttttttcttcgaaaatcg
ggctccgtcacattttggacatttttttagctgaaaatcagaaaaaacta
atgagcctaTCTCAAGAAAAGCTAAAGGTAAcagacagacgaacggacgg
aaaaaggttaatttataggacctccaccagggtacccggaggtaggtcca
aaaattaatcaaactctTAAGATTACTGAATATCGACTTCTGTTGTTCAA
AGTTGAATTCGGATTGTATATTAGGGAATAACTTTCAAAAACGGATTACA
CTTTGCCATATCAAGTCAGCAATCAACAAAATCCTTTGCCACATCTTTGA
TTTGCCAAACTAAATCTGGTTACATGTGTGCCCCCATGCGTTAACCTTAA
ATCCAGACCTTACTTTCAGCCCTCAGGGGTATTGGCCCTACTGCATTGCT
GAATTTCGACTGAAACTCAAACTGGACTCAGTGTggtgggttaagtaaac
aaaaacgtGTACCGAATGATGATTCAAAGATCTGCTTGGCTATCAAAAAA
TTATTCCAACATTTTTCTGACCCgggatttatgttttgaaggtAAATGGA
ACATTATTGATTGTTAAATAATAACCAGGAGGTTTTTCTACTTTAGTAAT
ATTTACGTTAGTGAATGTTTGACTGAAACgatataaagaatatatacaat
gAAGGTGATATATGTCTATCTCCCCCCTAGGTTCAAAATGTCCAAcataa
agataaaaaatactCATTCCATTTAGTCACTGAGTATAAGTCAAACATAA
ATAATAACCAGGAGGTTTTTCTACTTTAGTAATATTTACGTTAGTGAATG
TTTGACTGAAACgatataaagaatatatacaatgAAGGTGATATATGTCT
AATTGTCGCCTaggtttgtttaatttttttaattgaaactTAAATTGTTT
GATGGAGTTGGATTGATCAAGTCTAGCATAATCATATCCAAAAGAGGGTT
gataaaaatatgaaagaataaaagttctgttcttaaattttgacaaaata
gatagatagacaACAAACAGTGTCATAATAAACAACTTGTCAAACAACAA
ATGTGTTAAAACATAGCACCTGGCACTCAGGCTAAAATTCAGTTTCAGGC
TTCTAGAATGCTAACTGTTTTCTGTGTAGGGCAGATTCCACAAAGTTTCA
AACTACTTTGCACCTTTACACTAAACATAAGAAACCTAGGTAAAACACAG
GTCCACTTTCATCGTCACTCCTTTTCACTTTACCCATCAGTGAAGATGGA
GGATTGAGAACGGAAATTTAAACAGAATTTTTAAAGCTTCTACATTGTCT
AAAGGAAATACTACACTATGAATCAAGTCATACTTACTTGTTTGAAGAAG
TTGACCTTCAAGAGTTCGCCCTTCCTGTAAAAAAGCTGGGTGAAAGCGTG
GAGATATAAAAAAGAAGGTTCGCTCGCCTCAGTGCCTCAGTTATCCTTGA
CGCTGAGAATTTCGACAATCCAGttcccagtctttttttgaaaacgcGTT
TCCTGATCAATCTTTCAATTTAGACCACGGATGTTAATTAACAAACTAAT
CCTTCATTCCTTCAGCTTAAACAGaaaataaatttagaaaaaattgatca
aaaattcaaaaaatttcaaaacttc Coding sequence (CDS) from alignment at sc0001676:5880..7954 >TCONS_00037652 ID=TCONS_00037652|Name=TCONS_00037652|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0001676:5880..7954 (Clytia hemisphaerica)
TCACTGAGTATAAGTCAAACATAAATAATAACCAGGAGGTTTTTCTACTT
TAGTAATATTTACGTTAGTGAATGTTTGACTGAAACgatataaagaatat
atacaatgAAGGTGATATATGTCTAATTGTCGCCTaggtttgtttaattt
ttttaattgaaactTAAATTGTTTGATGGAGTTGGATTGATCAAGTCTAG
CATAATCATATCCAAAAGAGGGTTgataaaaatatgaaagaataaaagtt
ctgttcttaaattttgacaaaatagatagatagacaACAAACAGTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037652-exon-sc0001676-1491911889:5880..7954 | TCONS_00037652-exon-sc0001676-1491911889:5880..7954 | Clytia hemisphaerica | exon |
| TCONS_00037652-exon-sc0001676-1510915933:5880..7954 | TCONS_00037652-exon-sc0001676-1510915933:5880..7954 | Clytia hemisphaerica | exon |
| TCONS_00037652-exon-sc0001676-1575043694:5880..7954 | TCONS_00037652-exon-sc0001676-1575043694:5880..7954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001676 | supercontig | sc0001676:5880..7954 . |
Blast
The following BLAST results are available for this feature:
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