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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037047 ID=TCONS_00037047|Name=TCONS_00037047|organism=Clytia hemisphaerica|type=transcript|length=1405bp
taAAAGAAGATGGCAATCCTAGCCCAATGAGGACCCCAAGGAAATCATGG
TCGACCGAAGAAGATGCCATAATACAATCTGCTTTGTCTAATGGGACTCC
ATTCAAAGACATTAACGTTGACGCAAGTCCTCGACAGATTCGTGACCACG
TGAGGCATATTAAACGTAAAGGCCGAAACAGCTCGGACAAAGAGAGAGTA
ACAATACCTGTATCTGCAACCCTTGTGAGttcaatttcattgtttcttta
agAATAAATATGATCAGGAAGGGTAGCATTTGTTGTGTATTTTCTACTGT
GGAATCGCGCAGTTCCAACTTTTATTCTTCGAACTAATTAGCCTATTTAA
TTCACTATACGGGGGTGGGTTTGACGACCTTTTCTTAGCTCAAAATCGTT
TTCGCCATCTTTCTAGAACATGCATTTAAACTGTGAATATATTATTTAAA
CCCCTGGAAAAAATTCTATACCCACTTTATTGAAGACCGTGCTTTGAGCT
CCGTCCCTTGTCGAAAAAAGGCAAAAGTGAAATAGAGCTAAAACGAtcaa
aaatcactaaaaagggCCAGAATTGGCCTACTTCAAAGGTTAATATCGTT
ACTAGGGACATAGCTAGAAGCCTGTTCTTTATCCAGAGTCTATGATAAAT
CCTTGATACAAACAGCTGCTATTGCCACAAACAGCatatttttttaagtt
tcttcattttcatgtacTTCTTGTAGAATGAAGAAGATGAACATGATCAC
AGCACGATACGGATGGCCCCTAGGTCTCCTCCAAGGATGGAAATATTTCA
CACTGAGGGAGATAGACACTCTTTATGGCCGCCAGTTGATGTGCTAACAC
TTGAAAAATATGGTCAAGATTTCATTGACAAGAAACAGAAAATGAACGAT
AAATCNGTGGTAACACTTGAAAAATATGGTCAAGATTTCATTGACAAGAA
ACAGAAAATGAACAATAAATTCATTAAACAACTGGGTTATctaagtgaaa
aatattccttgCAACAGATTAGATCAAGAGTGCAACATCAAagaaacaag
caagcaaaggaGAAGGATGGAGAAAAGTGATTCTACAACAAAGTGATTGG
ACATCATGATCCTGTTTTCTTATATTTGTAACATATTTCTTTTGTCTATC
GTGCGTTAAGGGAAGAAAATCTCTCGTTTTCGAGACTTACTCCTAAAACT
AGCAATCCCAAGTCAAAATAGGCTATTCTATTATAGGTGAATAGCATTGA
TAGGGCAATTTTTTCCGTCCATCCTTGGACTACGTTTTTGGTATAACTTG
AATTGTTTTGCTACCAGGTTTTCCATTCTTTGGGAGANgctagtgcactg
taagggtaggaaattacaaaactgcactgaactgcactgtaagggtagga
aattg Run BLAST on NCBI transcript from alignment at sc0001562:24317..27879+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037047 ID=TCONS_00037047|Name=TCONS_00037047|organism=Clytia hemisphaerica|type=transcript|length=3563bp|location=Sequence derived from alignment at sc0001562:24317..27879+ (Clytia hemisphaerica)
taAAAGAAGATGGCAATCCTAGCCCAATGAGGACCCCAAGGAAATCATGG
TCGACCGAAGAAGATGCCATAATACAATCTGCTTTGTCTAATGGGACTCC
ATTCAAAGACATTAACGTTGACGCAAGTCCTCGACAGATTCGTGACCACG
TGAGGCATATTAAACGTAAAGGCCGAAACAGCTCGGACAAAGAGAGAGTA
ACAATACCTGTATCTGCAACCCTTGTGAGttcaatttcattgtttcttta
agAATAAATATGATCAGGAAGGGTAGCATTTGTTGTGTATTTTCTACTGT
GGAATCGCGCAGTTCCAACTTTTATTCTTCGAACTAATTAGCCTATTTAA
TTCACTATACGGGGGTGGGTTTGACGACCTTTTCTTAGCTCAAAATCGTT
TTCGCCATCTTTCTAGAACATGCATTTAAACTGTGAATATATTATTTAAA
CCCCTGGAAAAAATTCTATACCCACTTTATTGAAGACCGTGCTTTGAGCT
CCGTCCCTTGTCGAAAAAAGGCAAAAGTGAAATAGAGCTAAAACGAtcaa
aaatcactaaaaagggCCAGAATTGGCCTACTTCAAAGGTTAATATCGTT
ACTAGGGACATAGCTAGAAGCCTGTTCTTTATCCAGAGTCTATGATAAAT
CCTTGATACAAACAGCTGCTATTGCCACAAACAGCatatttttttaagtt
tcttcattttcatgtacTTCTTGTAGAATGAAGAAGATGAACATGATCAC
AGCACGATACGGATGGCCCCTAGGTCTCCTCCAAGGATGGAAATATTTCA
CGTAAGTGCTTAGAAAAGATGATTTCCCGTCCCcatgaaactttttttaa
ttcgttatgtgcgttaaaatttttctttttccgtGCTACAACAACAtctt
caacatttttcaaatagtgTGCTTCTACAGTGTGTCCGGACAAAATTTAt
ctaaagaaaaatcttttacgTTCAATTTCTTTTAATGGCGTCtattaggc
tatttttctcactcaagtgagttacggcatgtccaaagaaaaagtgaacc
agttccactcattttcaaaatgtcgaacatagctggaaagaagcgccttg
tgatgtagatcaacgtgataggtgttagaaaaatttaacttaaggctata
agaagttatagcccaaaaacctgtattatgacgtcataaacattacataa
cattacgtcataaaactaaaaatttgaatatctcgtgaactaaaagtcat
ataaacgtcaaattttgaccacaaatagataTTGATGTTAGAAAATTTCT
GAGTTAAAAATCCTTTGaaaataatgatgacgtcatttatNAATAGATAT
TGATGTAAGAAAATTTCtgagttaaaaatcttttgaaaaaaatgatgacg
tcatttattatagccaaaaatcgaaaattgcttaaaaatgctgacgtcat
catttttcaggagatttcgaaaattttactTCTAGAGAATTACGATATAT
TTGTTCTGTCAAAGTTACATATTGATATCATTAATAGTTTATgagttatt
taaattttaaatttcgtgaCGAaatgttacgtaatgtttatgacgtcata
atataggtttttgggctataacttcttatagccttaagttaaatttttct
aacacccatcacgttgatctacatcaTATGGCGCTTCTTTTCAGCTaggt
ttgacattttgaaagtgagtggaactggttcacttttaccttggacatgc
cgtaactcacttgagcaCAAAGAATTAATAAAGCTACATAGATATCTTTT
GAATAATCAACGAATTTCCGTGTTGCAGCAATGCAGTAAAATTCCTGAGG
GCGACTTTTTTGAggtctttattttttttgcctcCTTCGTTTAGACTGAG
GGAGATAGACACTCTTTATGGCCGCCAGTTGATGTGCTAACACTTGAAAA
ATATGGTCAAGATTTCATTGACAAGAAACAGAAAATGAACGATAAATCNG
TGGTAACACTTGAAAAATATGGTCAAGATTTCATTGACAAGAAACAGAAA
ATGAACAATAAATTCATTAAACAACTGGGTTATctaagtgaaaaatattc
cttgCAACAGATTAGATCAAGAGTGCAACATCAAagaaacaagcaagcaa
aggaGAAGGTTGGTAACTTTTTAAGTGAGATGATTACCGCTGAACCTACC
GAAGTCTCTAAAATTAAAGTGAATCCTCTAAGAACTATTTGCTAACAAGT
GCCGTTTTTGGACGAAACTTGAAGTCCTGTAAATTAACCCATTCCCGTCC
GTTCGTCCATCCGCCTGaacgttcgtctgttaccagcttttctcgggatc
agcttagttttttttctaattttttgcacaatgattcAAAATGGCAATGT
CAAAAATGTGAATGATGCCCAATTTTagataacaatttttttttttttgg
agggGGGGGGCAAAAAACTGTCTAAAATGGagctttttggactttgtgcg
aaaaattgctttgtaagtttttcctgattttttgcacaaagatgacGGCT
CGGTTCTCTAAACGCTGGCTGAAACGATTTTTCACGGACATTTTATTGGC
CATAGAAATTGGATTTTCgtaattgaatttatttttgtttaactATTTAC
ATGAATAACCAGCTTCTCTCACTATTCGCTAACTATTTTTTCTGAATCTT
TGCATCTGTatcaatgcccaaaacttgcgGTGCCTGATTTCGGAAAAGAA
CTACCTTAAaataggttttttggacttaatTTCTGGATTTCTTCCCCATA
ATAGATATGCAGTAGTACATACTTCCGAAAATGTGCTGAAacctattttc
gaaaaaaaaaattttacgacCTGTAGAACTGGCTGGTTCAACTGATATAA
TTGTTCCGATATAGAAAAAGTTCTAAATGGTGATGACTAAATTTaataat
tatttcattttatttgcaGTGAAATAAATCTTTTGTATTCGTAAAATTCT
TAGTAATAAtggccggaacagccgaaagcTGTCATAAAACGGTTCTACTT
CATATTTACAAGCTCTAGTCTGTACTTCCTGTTGTTGTCATTTAATCATC
AGGCAGGTCCATTTAGCATATTGCTTGTTATACTTGGATCTGGTAGTTTA
AGTTCGACGGGGTTAAGTTCATTGAGATTCTACCTGAAGGTTAATTAATT
AAATGTAAATTATTTGTTTATAGGATGGAGAAAAGTGATTCTACAACAAA
GTGATTGGACATCATGATCCTGTTTTCTTATATTTGTAACATATTTCTTT
TGTCTATCGTGCGTTAAGGGAAGAAAATCTCTCGTTTTCGAGACTTACTC
CTAAAACTAGCAATCCCAAGTCAAAATAGGCTATTCTATTATAGGTGAAT
AGCATTGATAGGGCAATTTTTTCCGTCCATCCTTGGACTACGTTTTTGGT
ATAACTTGAATTGTTTTGCTACCAGGTTTTCCATTCTTTGGGAGANgcta
gtgcactgtaagggtaggaaattacaaaactgcactgaactgcactgtaa
gggtaggaaattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037047-exon-sc0001562-1491911889:24317..25117 | TCONS_00037047-exon-sc0001562-1491911889:24317..25117 | Clytia hemisphaerica | exon |
| TCONS_00037047-exon-sc0001562-1510915933:24317..25117 | TCONS_00037047-exon-sc0001562-1510915933:24317..25117 | Clytia hemisphaerica | exon |
| TCONS_00037047-exon-sc0001562-1575043694:24317..25117 | TCONS_00037047-exon-sc0001562-1575043694:24317..25117 | Clytia hemisphaerica | exon |
| TCONS_00037047-exon-sc0001562-1491911889:26211..26474 | TCONS_00037047-exon-sc0001562-1491911889:26211..26474 | Clytia hemisphaerica | exon |
| TCONS_00037047-exon-sc0001562-1510915933:26211..26474 | TCONS_00037047-exon-sc0001562-1510915933:26211..26474 | Clytia hemisphaerica | exon |
| TCONS_00037047-exon-sc0001562-1575043694:26211..26474 | TCONS_00037047-exon-sc0001562-1575043694:26211..26474 | Clytia hemisphaerica | exon |
| TCONS_00037047-exon-sc0001562-1491911889:27540..27879 | TCONS_00037047-exon-sc0001562-1491911889:27540..27879 | Clytia hemisphaerica | exon |
| TCONS_00037047-exon-sc0001562-1510915933:27540..27879 | TCONS_00037047-exon-sc0001562-1510915933:27540..27879 | Clytia hemisphaerica | exon |
| TCONS_00037047-exon-sc0001562-1575043694:27540..27879 | TCONS_00037047-exon-sc0001562-1575043694:27540..27879 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001562 | supercontig | sc0001562:24317..27879 + |
Blast
The following BLAST results are available for this feature:
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