|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036913 ID=TCONS_00036913|Name=TCONS_00036913|organism=Clytia hemisphaerica|type=transcript|length=1648bp
ATAAGGAAGATATCAATTAATATTACTTACATAGGCTATTATTGTTCTAG
GTATCTCAAAATATTGCAGTAATTACACTAGATTTGCAAACCTAAAAAAC
ATTTCACTATTCAACATTTTTCACTAGAAAATGTCCGAACAAAAATTGTC
ccaattgaaaatcaaaagtgTAGAAATAAGAAAGTTCAATCCTAAAACAG
ATGCAAAAAGATTAACTGAAATATGGGTTAATGGTTTAGACCAATCAGTA
GACTCTCAATGGTGGTGGAACCGTGCTTATTGGAGAGAATTCTTCTCTCA
GTATGCAAAAGATGCAACTGCAGTTGATGGAGATATGGGCCCAGAAGGTA
CTAATCTTGAAAAATCGTGGTGTTTTGATGAAGAGAATGTACAAATGTTG
GTTGCTGAGCTCATATTTCAAGATCCAAAGATGGCACATCTTCTAGTTGG
AAGCATAGGAATCAAGAGAGGGTATGAGCACAGCAAAGATGGAACAATTT
TCACAATTTGGAGAATGTCAGTTGACATAAACTACAGAGGATATTCTATA
GGTGGAAAACTGTTATTAGCAGgagaaaaatgggcaaaacAAAAAGGAGG
CACGAAAATGAGCGCAGAATCAATGAATCCGATAGctattaaattttatt
tgaaacatGGTTATGAATGGTCGGAGTGGTCTTGGTGGGATTGGATTGTT
ttcaaatgcattggatcaattGGGatcaaatttcatgaaaaaactTTAGC
GTAAATAGAAACCTAGAAACTGGAAATCCCCACATTGCAAaactttgaca
aattttttgaacTCTAGAAATAAAGCACTTTATTTCAAAACCGTTGTCAT
GTTAACAAGTTTACCTTGAAACTTTATGACACCAAGAACAACTGGTGCTT
AtcaatttctaaaatatgaAACTGCACTACTTTCCAACCATTACATCCAA
TCTCGTTTATTATTCATTTATTAATTCGTTTGAGTGTTAatctcaggtgc
ctaataaataATATGCTGGTGGGTTtagaaataatttcaaaacatgaTTA
ACGAGAGGAACCTATTTCCTTGAGATCAGTAAAAGTGTTCTCATGAATAC
CCCCAAAATAAGATAAATAGACTTAATTCAGGTaatttggagcaaaataa
gggattCTTCTGTCAActgctaaaaattattttcaaaaattaacaaaaaa
agggCGCTGTTCATTAGGCAACTGATATTAGATTAATCAATTCTTTTGGG
tagaatatttttatatatagCCTTTTTTAGTTCATTTTATCAACAGTTTT
TTGATAggtcatttcatttttttttaaggaCGTGTATAAAATGTTGTAGT
TAAAATGCTGACATTTTGTGATGTGCAATTTGAatcagtaaaaaataaaa
taagtgAAAACAACATTCTATAAATACATAACAACATTAGAGTTTTTGTT
TCAGGGGCAACCGTAACAAACCTTCTCTTTAagaagatgttcttttaaaa
aagtcggtttttacatttctctatcatgtgGTCGGTTCAGTTGCTCATGT
GGtcagttcagttgttcacgtgttaggaACAAAAAATCTCTGTATATAAA
AgattaaatgttttgaaatatttttcattgttgCGAATATAAAAAGAT Run BLAST on NCBI transcript from alignment at sc0001535:9355..11002+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036913 ID=TCONS_00036913|Name=TCONS_00036913|organism=Clytia hemisphaerica|type=transcript|length=1648bp|location=Sequence derived from alignment at sc0001535:9355..11002+ (Clytia hemisphaerica)
ATAAGGAAGATATCAATTAATATTACTTACATAGGCTATTATTGTTCTAG
GTATCTCAAAATATTGCAGTAATTACACTAGATTTGCAAACCTAAAAAAC
ATTTCACTATTCAACATTTTTCACTAGAAAATGTCCGAACAAAAATTGTC
ccaattgaaaatcaaaagtgTAGAAATAAGAAAGTTCAATCCTAAAACAG
ATGCAAAAAGATTAACTGAAATATGGGTTAATGGTTTAGACCAATCAGTA
GACTCTCAATGGTGGTGGAACCGTGCTTATTGGAGAGAATTCTTCTCTCA
GTATGCAAAAGATGCAACTGCAGTTGATGGAGATATGGGCCCAGAAGGTA
CTAATCTTGAAAAATCGTGGTGTTTTGATGAAGAGAATGTACAAATGTTG
GTTGCTGAGCTCATATTTCAAGATCCAAAGATGGCACATCTTCTAGTTGG
AAGCATAGGAATCAAGAGAGGGTATGAGCACAGCAAAGATGGAACAATTT
TCACAATTTGGAGAATGTCAGTTGACATAAACTACAGAGGATATTCTATA
GGTGGAAAACTGTTATTAGCAGgagaaaaatgggcaaaacAAAAAGGAGG
CACGAAAATGAGCGCAGAATCAATGAATCCGATAGctattaaattttatt
tgaaacatGGTTATGAATGGTCGGAGTGGTCTTGGTGGGATTGGATTGTT
ttcaaatgcattggatcaattGGGatcaaatttcatgaaaaaactTTAGC
GTAAATAGAAACCTAGAAACTGGAAATCCCCACATTGCAAaactttgaca
aattttttgaacTCTAGAAATAAAGCACTTTATTTCAAAACCGTTGTCAT
GTTAACAAGTTTACCTTGAAACTTTATGACACCAAGAACAACTGGTGCTT
AtcaatttctaaaatatgaAACTGCACTACTTTCCAACCATTACATCCAA
TCTCGTTTATTATTCATTTATTAATTCGTTTGAGTGTTAatctcaggtgc
ctaataaataATATGCTGGTGGGTTtagaaataatttcaaaacatgaTTA
ACGAGAGGAACCTATTTCCTTGAGATCAGTAAAAGTGTTCTCATGAATAC
CCCCAAAATAAGATAAATAGACTTAATTCAGGTaatttggagcaaaataa
gggattCTTCTGTCAActgctaaaaattattttcaaaaattaacaaaaaa
agggCGCTGTTCATTAGGCAACTGATATTAGATTAATCAATTCTTTTGGG
tagaatatttttatatatagCCTTTTTTAGTTCATTTTATCAACAGTTTT
TTGATAggtcatttcatttttttttaaggaCGTGTATAAAATGTTGTAGT
TAAAATGCTGACATTTTGTGATGTGCAATTTGAatcagtaaaaaataaaa
taagtgAAAACAACATTCTATAAATACATAACAACATTAGAGTTTTTGTT
TCAGGGGCAACCGTAACAAACCTTCTCTTTAagaagatgttcttttaaaa
aagtcggtttttacatttctctatcatgtgGTCGGTTCAGTTGCTCATGT
GGtcagttcagttgttcacgtgttaggaACAAAAAATCTCTGTATATAAA
AgattaaatgttttgaaatatttttcattgttgCGAATATAAAAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036913-exon-sc0001535-1491911889:9355..11002 | TCONS_00036913-exon-sc0001535-1491911889:9355..11002 | Clytia hemisphaerica | exon |
| TCONS_00036913-exon-sc0001535-1510915933:9355..11002 | TCONS_00036913-exon-sc0001535-1510915933:9355..11002 | Clytia hemisphaerica | exon |
| TCONS_00036913-exon-sc0001535-1575043694:9355..11002 | TCONS_00036913-exon-sc0001535-1575043694:9355..11002 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001535 | supercontig | sc0001535:9355..11002 + |
Blast
The following BLAST results are available for this feature:
|
