TCONS_00036542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036542
Unique NameTCONS_00036542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036542 ID=TCONS_00036542|Name=TCONS_00036542|organism=Clytia hemisphaerica|type=transcript|length=540bp
TCCAGGTTGAAAAAGAGTTCTTCAAAGCGAAAAAACTCTGGAAACCTCAC
TTCGTGCTCACAACTGGACAGCTTGTTCACACAATGTGTGAGATATAAAC
TGGAGCTTCAAGCTAAAATTCACTTGGCGACTTGATACGAAACCAGCTGG
CAAACAccattgtttcaacgtccatcctGCGTAAAGAGTCAATCCTCATT
AAagtacaaattttcattttatatggaatgtgtggtaaaacatttgtAGA
TCTTCGCCGCAACAAATTATTCTTTATTATTATACAGATTTACAAGCTAG
GCTCACGATGGGCCTCTAACCGATCTTCTTTCACATTCCTCTTGTAACAA
ATTTTTGTGGGTGGTTTTTCCATGCATCATTCAGTTTCTCTTTAAACGAC
TTAATCGATTGTGCGGATACAACTTCCATTGGTAGTTTACTCCACGTTGG
CACACATCTATAGTAAAACGATTTAGTTTGGGGTCCATTGAagccgtcat
tagcaaagtttgGTAAAAGCTCTTTGGAATGTCTTCGTTT
Run BLAST on NCBI

transcript from alignment at sc0001478:44004..47066-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036542 ID=TCONS_00036542|Name=TCONS_00036542|organism=Clytia hemisphaerica|type=transcript|length=3063bp|location=Sequence derived from alignment at sc0001478:44004..47066- (Clytia hemisphaerica)
TCCAGGTTGAAAAAGAGTTCTTCAAAGCGAAAAAACTCTGGAAACCTCAC
TTCGTGCTCACAACTGGACAGCTTGTTCACACANGATAACAGCCAATCAT
TAACGCGTCTAAAGAAGCGCAATAATGCTGTGATTATTTCCTCTTTTGGT
CGTCTTCTAGAAAACCAATCGCGTTAGCGCGTTTTTTTGGCAGCACACAG
CTAATCATTAATGCGAATCTCGGCCAATCATAATAGACTAATTTGCAAAT
ATCATTTTTCGTGAGTGCAATTCTAATTTCTTTTTTTTTTTCATCAGGAC
GACGTGTGAAAGCACGCGATGATGGAAGTTATGACAGAAGGCTTTTTGGA
TTCAAGTAAAGGAGTAGATGTAAAGTAGAGAAGCTGTTGTTATCGTTAAA
GATTTGCTGCAGAAAGTTTGGTTTTGATCGAGGTACCTTTTATTTTACTC
TTTTATCCTGCCTTAAGGTTTAAAATCTCCCCTTCTAAATATAGTTGTAA
GCAAAAATTTAGAGGCAAATTTCTGCCTTTGTGGTTTTTTATTCCGGCTG
AAAGCGTGGGGTGAATCATTAAAGAATTGACGCACTAGATCGGGAAATAT
TGTATTGTATTAGAATTAGAATTTATGTCTCATTTATCTTAAAAACTTTA
TCAGGACGTTGGCATCACACATATCTAAAAGAGAACTCTACTAGAAAAGA
ATTTATTCAGCTAATGACACCTGAAGCGGGCTGTAAACATATTTTCAAAT
ATTGATTTAGAAGGTGATTCGTTGTAACCAATTTTTCGGATTAACAAATT
AGTATTTTATAGCCAACTATTGTTAATATTTACAATATATTTGACCACAA
ACACTTAATTTTCACCGGAACATCTCTATTCGTATTTCTAAGGGAAACAC
GTTTCACGTCTTTGAAATTTATCTTTGAAGATTAGGTCTCGGATCGTTCA
TAAACTCTTTCAGTCCTTCATTTTCATGTTTTTGACAAATCTTATTTTGA
CTCTGATCCTAAAACAAGCTCTAAAATCATATANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTGTT
CACACAATGTGTGAGATATAAACTGGAGCTTCAAGCTAAAATTCACTTGG
CGACTTGATACGAAACCAGCTGGCAAACACCATTGTTTCAACGTCCATCC
TGCGTAAAGAGTCAATCCTCATTAAAGTACAAATTTTCATTTTATATGGA
ATGTGTGGTAAAACATTTGTAGATCTTCGCCGCAACAAATTATTCTTTAT
TATTATACAGATTTACAAGCTAGGCTCACGATGGGCCTCTAACCGATCTT
CTTTCACATTCCTCTTGTAACAAATTTTTGTGGGTGGTTTTTCCATGCAT
CATTCAGTTTCTCTTTAAACGACTTAATCGATTGTGCGGATACAACTTCC
ATTGGTAGTTTACTCCACGTTGGCACACATCTATAGTAAAACGATTTAGT
TTGGGGTCCATTGAAGCCGTCATTAGCAAAGTTTGGTAAAAGCTCTTTGG
AATGTCTTCGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021553XLOC_021553Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036542-exon-sc0001478-1575043694:46985..47066TCONS_00036542-exon-sc0001478-1575043694:46985..47066Clytia hemisphaericaexon
TCONS_00036542-exon-sc0001478-1575043694:44004..44461TCONS_00036542-exon-sc0001478-1575043694:44004..44461Clytia hemisphaericaexon
TCONS_00036542-exon-sc0001478-1510915933:46985..47066TCONS_00036542-exon-sc0001478-1510915933:46985..47066Clytia hemisphaericaexon
TCONS_00036542-exon-sc0001478-1510915933:44004..44461TCONS_00036542-exon-sc0001478-1510915933:44004..44461Clytia hemisphaericaexon
TCONS_00036542-exon-sc0001478-1491911889:46985..47066TCONS_00036542-exon-sc0001478-1491911889:46985..47066Clytia hemisphaericaexon
TCONS_00036542-exon-sc0001478-1491911889:44004..44461TCONS_00036542-exon-sc0001478-1491911889:44004..44461Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001478supercontigsc0001478:44004..47066 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.00571	5.0543	6.01437	4.89651	3.60428	2.37676	10.8353	12.277	3.95093	4.86212	3.64655	3.82682	2.50589	2.01682	1.97833	2.1795	2.19781	2.03664	0.393983	2.14183	3.10455	3.46418	2.6602	2.28415	1.85456	1.13596	3.05347	1.29359	3.30053	1.93282
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top