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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036489 ID=TCONS_00036489|Name=TCONS_00036489|organism=Clytia hemisphaerica|type=transcript|length=675bp
AGATACTCAAACAAGAAGCATCTAACGagaaacaaaaaagaagttCATTT
ACACTCACAAAATTCGCAATAATATGGATTCGATGAAATTATTGACTGTT
TTATTTCTGGTTGTTGTTTTGCTTTGTCAAATGAATTCGATTGAAGGCAA
ACCGTGCGGTGGTGCAAGATGGAATAAACCATGTCCTAAGAATAAACATA
ACCAAAAGAAATCAAACACTAAAAGACACACAAGACACCAACGAGCCATC
CAGGAACAACAAGACTTGGAAGTCATGAAGGAAATCGAACGAATTATGAA
CCGCCAAAACAATAACTTAAATTTATAATTGAGATGTTGTTGAAGTTGAC
AAAGAAGGAGCAATGTTCAATGAAGATGAACGACAATGGAACGAGAAGAA
gttaatttgaaattaaattaaattgagaCGTTTGATCCGCGCTCAAATCT
TCAAGGaagaactttttaaatatttttacaatcgatattttttataaccN
GTTGATCCGCGCTCAAATCTTCAAGGaagaactttttaaatatttttaca
atcgatattttttataaccgtacatcctgtgcccaagttcaggagttgcc
ataaagccattatggtaataactgggagggcacattgctatacattgtat
aaTCGATATTTTATAAAACATCCCA Run BLAST on NCBI transcript from alignment at sc0001472:50769..57393+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036489 ID=TCONS_00036489|Name=TCONS_00036489|organism=Clytia hemisphaerica|type=transcript|length=6625bp|location=Sequence derived from alignment at sc0001472:50769..57393+ (Clytia hemisphaerica)
AGATACTCAAACAAGAAGCATCTAACGagaaacaaaaaagaagttCATTT
ACACTCACAAAATTCGCAATAATATGGATTCGATGAAATTATTGACTGTT
TTATTTCTGGTTGTTGTTTTGCTTTGTCAAATGAATTCGATTGAAGGCAA
ACCGTGCGGTGGTGCAAGATGGAATAAACCATGTCCTAAGAATAAACATA
ACCAAAAGGTAAGGGCTCATTAACAATCTACCTTATGTTAAATATATTGA
AGCGAGGCTCGAAAAAAACATTGTATTCAACCAAAGCATTTAAATGAAAT
CACACCCTTTAAATGATTCTTTTATTCTTGTTCTTCAgaaatcaaacatc
aaaagGCACACAAGACACCAACGAGCAGTTGAAGAGCTACATGACCTTGA
AGTCATGGAAGAAATTGAACGAATCATGAAACTACCGAATACCAGCTATA
GTCTAAAGTTCTAGAGCTGTTGGAATGCAGTATCGTCTCTATCGCTAGAA
GTTTCATACGCACTTTTGAACTGAAGCACCAATTGGTGGTAGAAGTAGAA
AAAGCCACAgttgaatttgtttttaattttggatgAACTTGGTACAGTCA
CGATTACTATGACACAAAAAGTTATtgttaaacaaaaatgaaaaggaagC
GATTGATTCGTTTTCGCTCttcagggaagaaatttttaggtatttttaaa
aattcaatttttataagaagaagcTGGTCTTGTTCATAAGTTATTCTTAA
AGTttgtaaatattattattattgtagGGAATTTCTTGTATTATTTATGT
AGGTAGAAATTATTATGGTTATAAGTTATTGTATTTTATTGTAAGCTATC
AACCTttatatgaaaatttaaaagattcaacaaaatcaacaaaaatgacA
ACGATTAGTTGTTTGGAATCTTTGACTTaaggagccccccccccccagtc
acctttcaaatcacgcaaaaaaattctcaaatcacgttatcacgagttaa
attttctttctatcacgatcacgttgatcATGGTTCCTCTGATCaacttt
aaaatcttcaatCACGAAATCACAAAGTTGAAAAAACGCCAATCACTCCA
TCTCGAAAACTGCAGGGGGATCCTCCTTAAGACTGTTTTGACTTCACGAA
AACGGTTTACGAAGATTTCTTTAGAAACAAGAAAGGGACGCATGTAGGAT
ATAGAATAAAATAGAACAATCAGggcgaaaaaaaacataatcccagctgg
cacacaacgttgttttaacgttcaaataacgttgtttggacgttatgaat
gtcacatggacgttgatTTGACGTTGCGTGCCGTCTGGGATCACACTTCC
TTTACTTCAAAATTTGACCTCTTCTGCACAATTAGACGTTTTTCTGTTTT
TGGACAAATCTAAAGCAACGATTCTTAACTTGATTCAACTTTGTTTTACT
AATATAttaaaataaagtaataaataATGGTGGCACGAGTCATGTCACTA
AGCTATCGCATTACCATGAATTTAGTACCGTGAGCATCACAGTTTGGCTT
TCACTGAAATTGAActtttgaggaaattttgaaTAGATTTTATTGCACAT
GTCACAATGGAATAAGCCATGGTATTTCATCCTCATATTGGAGTTAAACC
CATAACGTGTTTTAGTATCCGGGAGGGGgcttacttaggcaaaaatgggt
gccggTATCtgtgagccataagggtcccttttttgcACCCTCGATGGAAT
ATAAAAGCAAATTGCCAATTCCAAAATTGCGTAAATCAAAAATAGACTCT
CTAAAATGCACacaaattcttaaaatttggactgaaatttgtaaattttg
gctcaaaaTTTCGGAGAAGGTCTCTTTAAAGGTGACACAAATTCGGTCTc
tttaagggtcgattttcaaactttggctcggacatacccgtcatcttgCA
AATCTAGTACCCCTGGGATTAGTATTCATAAAGATATATTTCTACAGAGT
GACTCTGAGACTTATTAATATcagtaaaataattttctttcaaatgagtT
TACTCACTGATACCCATCAAACCTGCAAGGTGAATATAgtcaaaatatta
attttaaagGTCATATTGTAAAAGTAACAAGCCTAATCTTTTCTCAGATA
TGTTTTAAGATAACGAAAATTTTCTACGTTATAAAGGTATGATTTATTTG
GGATCTTTTGTTCTCGCTTAAAGCGCACTGAATAAAAAGTTCAACTGTCA
TTGCAGCTTGGCTGTAGACCTGTGATACGTTATGGTTTGGCTCAATACTC
GCCTACAAAATAGATTGACAATACACTaaacctaatttttcaaaataact
cTGATTCAGTAATAATCATACAATCCTTATCTGGTTGAATCATATAATCA
TTATCTGGTTGTGGATAAGTGATTGCAAATCTAACCATCATTGTCTCTCT
GTCGTTCAAGCAATGTCACAACGTTGTCTGCATCCGTGAAGGTGCCAGAA
AGGTAAATTCATTTGGAACTATGACAAAAATAACATCTCTGAAATTTAAT
CTATTGAGATGGACTATCTATAAGACTTTTTCGTGCATATCTCAATCATA
TTACTATTCCAAAGAATCGAAGATGGAGCGCCCATATGCTCATGTTAACT
TTAAGTAAATTATATAATTAttacctttgattacctttgatgtgtttcag
caaattctctgctcactcaacccgtggggtccggtgtttgaccatttcaa
caattgaattcgAGTCAGCCATCCTGTAAGGGAGATAGGCAGGGAGTAGT
GGATGGTCGGGAACATCTTGGAGTAGTTGTCGGGAACGGAAAATGTTATT
TTGATCTGGAGAAGCAAAATCTAGCAAACAATCGGTCGGAATTCTGGAAT
TAGAGAAAGAATACTCAAAACTACCAACAATTTTGTAGAGATCTtgaatc
aaaaaaaactttttttttgtgacGGGATTTTGGTTCTTGTTTGGTGGAAT
TGCGGAAAAGATACAGCTCTGTTAAATAAGTCTATTCTGACAATATTTGg
taatttttggccattttagtcttTTTCATAGAGGGCTTTAAATGTTAAAT
AGGAGATGCGAAAAATTGGAACATAGATTTGAAACAAGCaagattaaaat
atttcttttttttttcaattttcgattttatgaaaatttcaaatatattt
gTTTAATTTAACGATGTTTAATTTTTTAACATAGCGTAGATGAGttgaaa
actttaattttcagATGCTGAAACCGCCGATGGGTATGAAATTGAGCCCT
ATAACTGCGGTCTAAGATGTCATATTCAAGAAATTTCTTGTCACTGAAAA
CTTTCCCTTCTGATAtcgtcagttttgtttgttgAAAGTTTTGACAGCAA
AGTGTCGATTTCTTGAGAGAAGTTTCAAATGCTGAATGTTTTGAGAGGAC
AGTCAAATCCTTATATAGAAAATCGCTGTTGATGCCTCATGTaagaaaat
ctctttttaaCAAACACTACCCAACAAGAACGCCTCATTATACTTAAAAG
TGACCTTGGCTACAGAAACATGACATGAAATATACCAAGACTACGGATTC
TCAAATCTCACGTCAAGTTGAAGTTGACGTTAGAAACGAAAGAAAGGAAG
TCGGCTTAGCCCACACACTCTCTTTCAACAACTTCAAGACAACTTTCAAG
CACTGAAGTAGATGACGAAAACTTTAAGCTTCCTTGCAGCGTGGTCCGAA
ACTGGATGTCTTCCAAGAAAAGAGAAAGGAAAAGTACAAAGTCGCTTTCA
CTCAATATTTAGTGGGTCAAGAAATCGTAAAATATGATACctgtcaaaaa
atttatacCCCCATAACTTGAATGTTGATTGTGtgaaaaaattgcgaaaa
tttgcattttttgtCACTGCTTAGTGTGGTTTACACTGAATTATTGTTAC
TTTGTCTTGACCACCGAAACAACAAATGGCTAATTTTGTCACATCATCAA
ACCCGTACGCCCTTaaacatccctgtgtcacagactcaTGGCAGGGATAC
CTACCCAACTGAGAAGTTTGGCTAAAATTTCATCCCCTGTGGGAAAATAG
CCTACAATTTCAGCTCATCcattggaaaattgactttgtttctctgttca
aaatttaataaaaaaatgcacTCTAAATAAAAACCATCCCAACTTGATTT
TTAACCTAACAACATAGAACCAATATCTCCATTAGAATTTCAATAGAAAA
TTCCATCCCGTTTCCCGTTGTAGGATGCTCCTCCGGTGgctgtgagatag
gggtgtcCCCAAGGTAGAGAATTTGGCAAATGTCACCACAATAATGAGGT
GAAAATGTTAGCTCAATACCCTCAATAGCAGCAGCGGGAGACTTATGGTA
GGATCATAAAGCAGCTTGTTCACTTGCTGgcctcccggggggggggactc
aatttcgaaacgacggtatgtgccgcgcaaaatctactttttaaaatcgt
acccttacagtgcagttcaatatggcatggctgaaaaggtaccctttcag
tgcattttcttatgattacccaacccttatatagtgcactatatttctcg
gCTGTAAATCTGCTTGAAAGAtagaagaagcttgggaaaatTTCtgatta
aaagaaaaacttagaaaattattcttgtcagctgtaattgtcagacaata
gaaactttttcaaacaaacgagaagtaaaaacctttctttttaacaatta
ttttgaatttgttttaaaattcgacccttgcaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCC
CCCCCTCTGGGGCTGGCCTTTAAGATCGTTTATCATTTGAGAaagtattt
tccaaaaatctttttccaacACCAGTAAAAAGGGATTTTCAAAATGATTA
GAGCTGCTATCCACTTTTGAGAGTAGATTATCGTTAAAAAAAGGAGCCCA
TGATATTGCTTTAGAGTTGGCCAATCGAACACCCACTAAATTGGCTAGCA
CACTTTGACTTTCCAAATATAAAGAGAGAGGGGAGAGCTGAGAGTAGATT
AAGGATTATTTTGTAGCATTACCGACTTTAGCAAATCGCTACAacttttt
ttgcgtgatggatGTTGGAAAGTTACAATCTGATTGTAATCAGAAACCCT
GAGATAAGAGTAAGTTTAGATATATAATCAATGTTATAAAAACAATAcaa
ttttcttgtttatttAAGAGGTAATGTTACAGGTCGATCAGTATAAATAG
CAGGCTGGGATTTAGCTGAAGATCAGAAACATAAAGATACTCCATCAAGA
AGCATCCAAATAGAAACCAAGCAGAAATTCACATAAATTATCAATCATAG
CAATGGATTCCTTGAAATTATTGACTGttttatttgttgttgttgttttg
cttTGTCAAATGAATTCGATTGAAGGCAAGCCATGCGGTGGTGCAAGGTG
GAACAAACCATGTCCTAAGAACAAACATAACCAAAAGGTAAGGAGAATTT
GTTTATAAACAATATGCTCAACTTGACATAAAGTGGAATGAGGGTTAACG
CTACACTTCAGGCCGGCGGAAGCGAGGAGACAGGGGAGACTTTAGCCTct
ccacttttgagcaaatgagattttttttctcaaattcctagggaatttat
ctcattttgagccttcagccttcCCGCTTTTATGGTTGTTCCGCCTCGGT
TCCGCCGGACCAACACTTAGATCTGCAGTCATCTTTGAGAAAGGGCTCAG
GCTTCTGTTTATCATCCAACGAAAAAATTTCTTATATGAAGCATCTAGAG
AGgtttgcgattcagactagcaaGGTTTATCTCAACCATCAtaactgaaa
agaaaaacttttccgTTGAATCAACACTCATTTGTAATCCTATTTCCCTT
GTCTTCAGAAATCAAACACTAAAAGACACACAAGACACCAACGAGCCATC
CAGGAACAACAAGACTTGGAAGTCATGAAGGAAATCGAACGAATTATGAA
CCGCCAAAACAATAACTTAAATTTATAATTGAGATGTTGTTGAAGTTGAC
AAAGAAGGAGCAATGTTCAATGAAGATGAACGACAATGGAACGAGAAGAA
gttaatttgaaattaaattaaattgagaCGTTTGATCCGCGCTCAAATCT
TCAAGGaagaactttttaaatatttttacaatcgatattttttataaccN
GTTGATCCGCGCTCAAATCTTCAAGGaagaactttttaaatatttttaca
atcgatattttttataaccgtacatcctgtgcccaagttcaggagttgcc
ataaagccattatggtaataactgggagggcacattgctatacattgtat
aaTCGATATTTTATAAAACATCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036489-exon-sc0001472-1491911889:50769..50976 | TCONS_00036489-exon-sc0001472-1491911889:50769..50976 | Clytia hemisphaerica | exon |
| TCONS_00036489-exon-sc0001472-1510915933:50769..50976 | TCONS_00036489-exon-sc0001472-1510915933:50769..50976 | Clytia hemisphaerica | exon |
| TCONS_00036489-exon-sc0001472-1575043694:50769..50976 | TCONS_00036489-exon-sc0001472-1575043694:50769..50976 | Clytia hemisphaerica | exon |
| TCONS_00036489-exon-sc0001472-1491911889:56927..57393 | TCONS_00036489-exon-sc0001472-1491911889:56927..57393 | Clytia hemisphaerica | exon |
| TCONS_00036489-exon-sc0001472-1510915933:56927..57393 | TCONS_00036489-exon-sc0001472-1510915933:56927..57393 | Clytia hemisphaerica | exon |
| TCONS_00036489-exon-sc0001472-1575043694:56927..57393 | TCONS_00036489-exon-sc0001472-1575043694:56927..57393 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001472 | supercontig | sc0001472:50769..57393 + |
Blast
The following BLAST results are available for this feature:
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