XLOC_021512 (gene) - C. hemisphaerica

Overview
NameXLOC_021512
Unique NameXLOC_021512
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001472:50769..57393+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_021512 ID=XLOC_021512|Name=XLOC_021512|organism=Clytia hemisphaerica|type=gene|length=6625bp|location=Sequence derived from alignment at sc0001472:50769..57393+ (Clytia hemisphaerica)
AGATACTCAAACAAGAAGCATCTAACGagaaacaaaaaagaagttCATTT
ACACTCACAAAATTCGCAATAATATGGATTCGATGAAATTATTGACTGTT
TTATTTCTGGTTGTTGTTTTGCTTTGTCAAATGAATTCGATTGAAGGCAA
ACCGTGCGGTGGTGCAAGATGGAATAAACCATGTCCTAAGAATAAACATA
ACCAAAAGGTAAGGGCTCATTAACAATCTACCTTATGTTAAATATATTGA
AGCGAGGCTCGAAAAAAACATTGTATTCAACCAAAGCATTTAAATGAAAT
CACACCCTTTAAATGATTCTTTTATTCTTGTTCTTCAgaaatcaaacatc
aaaagGCACACAAGACACCAACGAGCAGTTGAAGAGCTACATGACCTTGA
AGTCATGGAAGAAATTGAACGAATCATGAAACTACCGAATACCAGCTATA
GTCTAAAGTTCTAGAGCTGTTGGAATGCAGTATCGTCTCTATCGCTAGAA
GTTTCATACGCACTTTTGAACTGAAGCACCAATTGGTGGTAGAAGTAGAA
AAAGCCACAgttgaatttgtttttaattttggatgAACTTGGTACAGTCA
CGATTACTATGACACAAAAAGTTATtgttaaacaaaaatgaaaaggaagC
GATTGATTCGTTTTCGCTCttcagggaagaaatttttaggtatttttaaa
aattcaatttttataagaagaagcTGGTCTTGTTCATAAGTTATTCTTAA
AGTttgtaaatattattattattgtagGGAATTTCTTGTATTATTTATGT
AGGTAGAAATTATTATGGTTATAAGTTATTGTATTTTATTGTAAGCTATC
AACCTttatatgaaaatttaaaagattcaacaaaatcaacaaaaatgacA
ACGATTAGTTGTTTGGAATCTTTGACTTaaggagccccccccccccagtc
acctttcaaatcacgcaaaaaaattctcaaatcacgttatcacgagttaa
attttctttctatcacgatcacgttgatcATGGTTCCTCTGATCaacttt
aaaatcttcaatCACGAAATCACAAAGTTGAAAAAACGCCAATCACTCCA
TCTCGAAAACTGCAGGGGGATCCTCCTTAAGACTGTTTTGACTTCACGAA
AACGGTTTACGAAGATTTCTTTAGAAACAAGAAAGGGACGCATGTAGGAT
ATAGAATAAAATAGAACAATCAGggcgaaaaaaaacataatcccagctgg
cacacaacgttgttttaacgttcaaataacgttgtttggacgttatgaat
gtcacatggacgttgatTTGACGTTGCGTGCCGTCTGGGATCACACTTCC
TTTACTTCAAAATTTGACCTCTTCTGCACAATTAGACGTTTTTCTGTTTT
TGGACAAATCTAAAGCAACGATTCTTAACTTGATTCAACTTTGTTTTACT
AATATAttaaaataaagtaataaataATGGTGGCACGAGTCATGTCACTA
AGCTATCGCATTACCATGAATTTAGTACCGTGAGCATCACAGTTTGGCTT
TCACTGAAATTGAActtttgaggaaattttgaaTAGATTTTATTGCACAT
GTCACAATGGAATAAGCCATGGTATTTCATCCTCATATTGGAGTTAAACC
CATAACGTGTTTTAGTATCCGGGAGGGGgcttacttaggcaaaaatgggt
gccggTATCtgtgagccataagggtcccttttttgcACCCTCGATGGAAT
ATAAAAGCAAATTGCCAATTCCAAAATTGCGTAAATCAAAAATAGACTCT
CTAAAATGCACacaaattcttaaaatttggactgaaatttgtaaattttg
gctcaaaaTTTCGGAGAAGGTCTCTTTAAAGGTGACACAAATTCGGTCTc
tttaagggtcgattttcaaactttggctcggacatacccgtcatcttgCA
AATCTAGTACCCCTGGGATTAGTATTCATAAAGATATATTTCTACAGAGT
GACTCTGAGACTTATTAATATcagtaaaataattttctttcaaatgagtT
TACTCACTGATACCCATCAAACCTGCAAGGTGAATATAgtcaaaatatta
attttaaagGTCATATTGTAAAAGTAACAAGCCTAATCTTTTCTCAGATA
TGTTTTAAGATAACGAAAATTTTCTACGTTATAAAGGTATGATTTATTTG
GGATCTTTTGTTCTCGCTTAAAGCGCACTGAATAAAAAGTTCAACTGTCA
TTGCAGCTTGGCTGTAGACCTGTGATACGTTATGGTTTGGCTCAATACTC
GCCTACAAAATAGATTGACAATACACTaaacctaatttttcaaaataact
cTGATTCAGTAATAATCATACAATCCTTATCTGGTTGAATCATATAATCA
TTATCTGGTTGTGGATAAGTGATTGCAAATCTAACCATCATTGTCTCTCT
GTCGTTCAAGCAATGTCACAACGTTGTCTGCATCCGTGAAGGTGCCAGAA
AGGTAAATTCATTTGGAACTATGACAAAAATAACATCTCTGAAATTTAAT
CTATTGAGATGGACTATCTATAAGACTTTTTCGTGCATATCTCAATCATA
TTACTATTCCAAAGAATCGAAGATGGAGCGCCCATATGCTCATGTTAACT
TTAAGTAAATTATATAATTAttacctttgattacctttgatgtgtttcag
caaattctctgctcactcaacccgtggggtccggtgtttgaccatttcaa
caattgaattcgAGTCAGCCATCCTGTAAGGGAGATAGGCAGGGAGTAGT
GGATGGTCGGGAACATCTTGGAGTAGTTGTCGGGAACGGAAAATGTTATT
TTGATCTGGAGAAGCAAAATCTAGCAAACAATCGGTCGGAATTCTGGAAT
TAGAGAAAGAATACTCAAAACTACCAACAATTTTGTAGAGATCTtgaatc
aaaaaaaactttttttttgtgacGGGATTTTGGTTCTTGTTTGGTGGAAT
TGCGGAAAAGATACAGCTCTGTTAAATAAGTCTATTCTGACAATATTTGg
taatttttggccattttagtcttTTTCATAGAGGGCTTTAAATGTTAAAT
AGGAGATGCGAAAAATTGGAACATAGATTTGAAACAAGCaagattaaaat
atttcttttttttttcaattttcgattttatgaaaatttcaaatatattt
gTTTAATTTAACGATGTTTAATTTTTTAACATAGCGTAGATGAGttgaaa
actttaattttcagATGCTGAAACCGCCGATGGGTATGAAATTGAGCCCT
ATAACTGCGGTCTAAGATGTCATATTCAAGAAATTTCTTGTCACTGAAAA
CTTTCCCTTCTGATAtcgtcagttttgtttgttgAAAGTTTTGACAGCAA
AGTGTCGATTTCTTGAGAGAAGTTTCAAATGCTGAATGTTTTGAGAGGAC
AGTCAAATCCTTATATAGAAAATCGCTGTTGATGCCTCATGTaagaaaat
ctctttttaaCAAACACTACCCAACAAGAACGCCTCATTATACTTAAAAG
TGACCTTGGCTACAGAAACATGACATGAAATATACCAAGACTACGGATTC
TCAAATCTCACGTCAAGTTGAAGTTGACGTTAGAAACGAAAGAAAGGAAG
TCGGCTTAGCCCACACACTCTCTTTCAACAACTTCAAGACAACTTTCAAG
CACTGAAGTAGATGACGAAAACTTTAAGCTTCCTTGCAGCGTGGTCCGAA
ACTGGATGTCTTCCAAGAAAAGAGAAAGGAAAAGTACAAAGTCGCTTTCA
CTCAATATTTAGTGGGTCAAGAAATCGTAAAATATGATACctgtcaaaaa
atttatacCCCCATAACTTGAATGTTGATTGTGtgaaaaaattgcgaaaa
tttgcattttttgtCACTGCTTAGTGTGGTTTACACTGAATTATTGTTAC
TTTGTCTTGACCACCGAAACAACAAATGGCTAATTTTGTCACATCATCAA
ACCCGTACGCCCTTaaacatccctgtgtcacagactcaTGGCAGGGATAC
CTACCCAACTGAGAAGTTTGGCTAAAATTTCATCCCCTGTGGGAAAATAG
CCTACAATTTCAGCTCATCcattggaaaattgactttgtttctctgttca
aaatttaataaaaaaatgcacTCTAAATAAAAACCATCCCAACTTGATTT
TTAACCTAACAACATAGAACCAATATCTCCATTAGAATTTCAATAGAAAA
TTCCATCCCGTTTCCCGTTGTAGGATGCTCCTCCGGTGgctgtgagatag
gggtgtcCCCAAGGTAGAGAATTTGGCAAATGTCACCACAATAATGAGGT
GAAAATGTTAGCTCAATACCCTCAATAGCAGCAGCGGGAGACTTATGGTA
GGATCATAAAGCAGCTTGTTCACTTGCTGgcctcccggggggggggactc
aatttcgaaacgacggtatgtgccgcgcaaaatctactttttaaaatcgt
acccttacagtgcagttcaatatggcatggctgaaaaggtaccctttcag
tgcattttcttatgattacccaacccttatatagtgcactatatttctcg
gCTGTAAATCTGCTTGAAAGAtagaagaagcttgggaaaatTTCtgatta
aaagaaaaacttagaaaattattcttgtcagctgtaattgtcagacaata
gaaactttttcaaacaaacgagaagtaaaaacctttctttttaacaatta
ttttgaatttgttttaaaattcgacccttgcaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCC
CCCCCTCTGGGGCTGGCCTTTAAGATCGTTTATCATTTGAGAaagtattt
tccaaaaatctttttccaacACCAGTAAAAAGGGATTTTCAAAATGATTA
GAGCTGCTATCCACTTTTGAGAGTAGATTATCGTTAAAAAAAGGAGCCCA
TGATATTGCTTTAGAGTTGGCCAATCGAACACCCACTAAATTGGCTAGCA
CACTTTGACTTTCCAAATATAAAGAGAGAGGGGAGAGCTGAGAGTAGATT
AAGGATTATTTTGTAGCATTACCGACTTTAGCAAATCGCTACAacttttt
ttgcgtgatggatGTTGGAAAGTTACAATCTGATTGTAATCAGAAACCCT
GAGATAAGAGTAAGTTTAGATATATAATCAATGTTATAAAAACAATAcaa
ttttcttgtttatttAAGAGGTAATGTTACAGGTCGATCAGTATAAATAG
CAGGCTGGGATTTAGCTGAAGATCAGAAACATAAAGATACTCCATCAAGA
AGCATCCAAATAGAAACCAAGCAGAAATTCACATAAATTATCAATCATAG
CAATGGATTCCTTGAAATTATTGACTGttttatttgttgttgttgttttg
cttTGTCAAATGAATTCGATTGAAGGCAAGCCATGCGGTGGTGCAAGGTG
GAACAAACCATGTCCTAAGAACAAACATAACCAAAAGGTAAGGAGAATTT
GTTTATAAACAATATGCTCAACTTGACATAAAGTGGAATGAGGGTTAACG
CTACACTTCAGGCCGGCGGAAGCGAGGAGACAGGGGAGACTTTAGCCTct
ccacttttgagcaaatgagattttttttctcaaattcctagggaatttat
ctcattttgagccttcagccttcCCGCTTTTATGGTTGTTCCGCCTCGGT
TCCGCCGGACCAACACTTAGATCTGCAGTCATCTTTGAGAAAGGGCTCAG
GCTTCTGTTTATCATCCAACGAAAAAATTTCTTATATGAAGCATCTAGAG
AGgtttgcgattcagactagcaaGGTTTATCTCAACCATCAtaactgaaa
agaaaaacttttccgTTGAATCAACACTCATTTGTAATCCTATTTCCCTT
GTCTTCAGAAATCAAACACTAAAAGACACACAAGACACCAACGAGCCATC
CAGGAACAACAAGACTTGGAAGTCATGAAGGAAATCGAACGAATTATGAA
CCGCCAAAACAATAACTTAAATTTATAATTGAGATGTTGTTGAAGTTGAC
AAAGAAGGAGCAATGTTCAATGAAGATGAACGACAATGGAACGAGAAGAA
gttaatttgaaattaaattaaattgagaCGTTTGATCCGCGCTCAAATCT
TCAAGGaagaactttttaaatatttttacaatcgatattttttataaccN
GTTGATCCGCGCTCAAATCTTCAAGGaagaactttttaaatatttttaca
atcgatattttttataaccgtacatcctgtgcccaagttcaggagttgcc
ataaagccattatggtaataactgggagggcacattgctatacattgtat
aaTCGATATTTTATAAAACATCCCA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00036489TCONS_00036489Clytia hemisphaericatranscript
TCONS_00036490TCONS_00036490Clytia hemisphaericatranscript
TCONS_00036491TCONS_00036491Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001472supercontigsc0001472:50769..57393 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.53	0	0	0	0.08	0.05	0.7	0	0.05	1.01	0.93	0.42	1.18	0.29	0.08	0.76	1.13	0.73	0.72	1.7	2.99	4.54	5.91	0.26	0.22	7.82	2.74