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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036198 ID=TCONS_00036198|Name=TCONS_00036198|organism=Clytia hemisphaerica|type=transcript|length=1372bp
attaagtcaacgacgaataattatgcaaattatgtgagtttacgttatcc
ctcgccgcgaaatttgaattgtcgttgttgtcgttgttgataagctaccg
agtttactgtccctaagctagttattcagtcacaacttaaccatcagatt
tatccaagtgactgaatcaaactagcttagatttctaggctaNGACTTGT
TAAAATTAAAACCACAGGACCCTTAAATGGAAGTAAACTTCACTCTATAA
CTAAAGGTAAAAATGAACCGATATACATTAGATCAAAAACCGACTTTAGA
CACTTGCTTACTACAAAAGATAAGCTCTGGCCTTCAGAGATTAGTAGTTC
AAGTGAAAGTGATGAATATGAAGATCCTGTACGCAGAAAGCAGAAGCTGG
AATCATGTGAATGTCCAATTTGTCAGAAAGTTTTCCCATTAGACACTATC
AGTGCCAATGCAAGTAGTTGTGGTGAGGTCTTCGTAGCAAAATCTGCCAC
CAAAGGCATGCATACATCAACTGCTACAAGACCCCAAACATCAACTGCTA
CAAGACCCCAAACACCGATTGAAACAAAACCTCCAACATTGACTGAAACA
AGACCTTCTGCATCGACTGGATCTGGATCACTCCGTACTCCACCAGCTGC
TATTGTCCCTAAGACTTTAACCTTTGAAAGTGAGCTGAAAAAACtgcaaa
caatttttcaatgtaGAACGGAGAAAAATCTCAACTTGAGACTTAAGAAT
GTGTATGAAGATATGGCCAAAAAGTTTAGACtattattcaaaacaaaact
ttcacCCGTCACAGTCACCTTTTTCGAGGAGGTAGGAGTCGACGATGGTG
GGTTGACACGGGAAGCCTTCTCCAAAATTTTTGCTACAGCTAATCGTGAG
GTTCTCTGTTGAATGGAAAATCGATTCACATTAATTCACGACAAGATAAA
ACTGGAGGCAGgagattttttcatatttggcCAGATACTCAGCATGGCTT
TGCTGATGGGTGCTTCTGGCCCACATGATCTTTCTAAACCATTCGCAGAA
CACCTCCTTTCTTTTAAAGAACCCAATTCGTACGACATCAAAGATATACC
TGTGGCGGAGGTGCAAGAGAAATTGGTTGGGATTAAGAACTGTCAGACTA
AGGAGGAGCTTGACGACTGTTTTGCTTCATTTGATGAAAGATTTGAAGCT
GGCTACAACAAAATGGTCCTCAATATGGATGAGCGAGAGCATTTTTGTCG
ATTAATATCTCgtttttttattgttgaaaGAAATCACGCTGAGATTTCGC
AGCTGTTGAAAGGAGTTCACCCTGACCTCCTCTCACTAATGAGAAGATTC
CCTGAAGAAGGAATCAAAGAAA Run BLAST on NCBI transcript from alignment at sc0001424:30278..32024+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036198 ID=TCONS_00036198|Name=TCONS_00036198|organism=Clytia hemisphaerica|type=transcript|length=1747bp|location=Sequence derived from alignment at sc0001424:30278..32024+ (Clytia hemisphaerica)
attaagtcaacgacgaataattatgcaaattatgtgagtttacgttatcc
ctcgccgcgaaatttgaattgtcgttgttgtcgttgttgataagctaccg
agtttactgtccctaagctagttattcagtcacaacttaaccatcagatt
tatccaagtgactgaatcaaactagcttagatttctaggctaNGACTTGT
TAAAATTAAAACCACAGGACCCTTAAATGGAAGTAAACTTCACTCTATAA
CTAAAGGTAAAAATGAACCGATATACATTAGATCAAAAACCGACTTTAGA
CACTTGCTTACTACAAAAGATAAGCTCTGGCCTTCAGAGATTAGTAGTTC
AAGTGAAAGTGATGAATATGAAGATCCTGTACGCAGAAAGCAGAAGCTGG
AATCATGTGAATGTCCAATTTGTCAGAAAGTTTTCCCATTAGACACTATC
AGTGCCAATGCAAGTAGTTGTGGTGAGGTCTTCGTAGCAAAATCTGCCAC
CAAAGGCATGCATACATCAACTGCTACAAGACCCCAAACATCAACTGCTA
CAAGACCCCAAACACCGATTGAAACAAAACCTCCAACATTGACTGAAACA
AGACCTTCTGCATCGACTGGATCTGGATCACTCCGTACTCCACCAGCTGC
TATTGTCCCTAAGACTTTAACCTTTGAAAGTGAGCTGAAAAAACtgcaaa
caatttttcaatgtaGAACGGAGAAAAATCTCAACTTGAGACTTAAGAAT
GTGTATGAAGATATGGCCAAAAAGTTTAGACtattattcaaaacaaaact
ttcacCCGTCACAGTCACCTTTTTCGAGGAGGTAGGAGTCGACGATGGTG
GGTTGACACGGGAAGCCTTCTCCAAAATTTTTGCTACAGCTAATCGTGAG
GTTCTCTGTTGAATGGAAAATCGATTCACATTAATTCACGACAAGATAAA
ACTGGAGGCAGgagattttttcatatttggcCAGATACTCAGCATGGCTT
TGCTGATGGGTGCTTCTGGCCCACATGATCTTTCTAAACCATTCGCAGAA
CACCTCCTTTCTTTTAAAGAACCCAATTCGTACGACATCAAAGATATACC
TGTGGCGGAGGTGCAAGAGAAATTGGTTGGGATTAAGAACTGTCAGACTA
AGGAGGAGCTTGACGACTGTTTTGCTTCATTTGATGAAAGATTTGAAGCT
GGGTAAGTTAACTATTACTACAGTGCCTCACCTAAAAACTTCTAGAACTT
TTCTCTTCTCACTGGTCAATGGGCAACTAAATTTACTCTTCAGGCTCATT
TTCAGTGAGGATCTTTAAACAAACAGAGGGGCTACTTTCCACCCCACCTT
ACCATAGCTAGATGGTGGGGGAaacgattttccaaaaaagtcgAAAGGGT
GGGTGTACAGATATTTCTTGTTCGTTTTTCGTTTGCTCATTCGTTCCTTT
TTCAGAATCTTTTCCATTAATGTCTATGTTTTCTCTCATTTggctaactt
tcatcatcaggtaggtccaatcagcatgttgcttgttgttATTAATaatg
gatttttaaatttttctcttgTTTCAGCTACAACAAAATGGTCCTCAATA
TGGATGAGCGAGAGCATTTTTGTCGATTAATATCTCgtttttttattgtt
gaaaGAAATCACGCTGAGATTTCGCAGCTGTTGAAAGGAGTTCACCCTGA
CCTCCTCTCACTAATGAGAAGATTCCCTGAAGAAGGAATCAAAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036198-exon-sc0001424-1491911889:30278..31479 | TCONS_00036198-exon-sc0001424-1491911889:30278..31479 | Clytia hemisphaerica | exon |
| TCONS_00036198-exon-sc0001424-1510915933:30278..31479 | TCONS_00036198-exon-sc0001424-1510915933:30278..31479 | Clytia hemisphaerica | exon |
| TCONS_00036198-exon-sc0001424-1575043694:30278..31479 | TCONS_00036198-exon-sc0001424-1575043694:30278..31479 | Clytia hemisphaerica | exon |
| TCONS_00036198-exon-sc0001424-1491911889:31855..32024 | TCONS_00036198-exon-sc0001424-1491911889:31855..32024 | Clytia hemisphaerica | exon |
| TCONS_00036198-exon-sc0001424-1510915933:31855..32024 | TCONS_00036198-exon-sc0001424-1510915933:31855..32024 | Clytia hemisphaerica | exon |
| TCONS_00036198-exon-sc0001424-1575043694:31855..32024 | TCONS_00036198-exon-sc0001424-1575043694:31855..32024 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001424 | supercontig | sc0001424:30278..32024 + |
Blast
The following BLAST results are available for this feature:
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