TCONS_00035822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035822
Unique NameTCONS_00035822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3176

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035822 ID=TCONS_00035822|Name=TCONS_00035822|organism=Clytia hemisphaerica|type=transcript|length=3176bp
NTGTTCCTGATGACCCTTATTACGCATTCCGTGATACGAACGATCATTCG
AAGTACGCTCTTAGTGACACGGCTGACAATCCGTACGTCTGTATTGGGGA
TATTAACAGACAGaCCGGACAATTCAAAAGAGGTGGTGGTACCGTTTGCA
CCAAGAATGCATCATTATGGAAAACATTTAGAGGAATGGTTGATGACATC
AATTCATGTCAAAATCAAGATCAATTTGAAGATATCTTTGACATGATATA
GGAATCAAAAATTTATCACTCGGAattgtgaattttttaaccataaattt
agaaaaattattttcgggATGAAAAAGTCCAAGTAAATCCGAATAACTTT
TTGCACATTATATtaggccattccattttatatccatacagggggtggac
gaacatatCCAGGAGGTAATTTACAGGGggcattttttcatttttccagt
agGTCAaaggttattctaaaattttcaggaGGTAATAGACTAATTTTTGT
TCGTCCACCCTTACTTTTAAGgtacgaaaataatttttccaagacttctt
tttcaaatcttgtcattttccagggggtattaccacatttctaaaaatct
ttttttgccttaaaaaggttcgtccagcccccctgtatggaaatttaatg
gaacagcccatttgaTAGTCTGATTTAATTTTCGTTGTTGTcaaattttt
cttgctttacTACGATAAAATTTAGATTATGATTTACATTTTCCCGGCAA
TTCACCAATTCTGTCGCGTCTTTGATTTTTCACATTCTATTGTCAGAATT
TCACCATTACATATTTTATCTTAATTACATGATGTTTCATAATTGAAAAA
TCTACCTTTTGCTTAATTTTCGCCGTCTacaatttttcattaatttaatT
TACGTTTATATTTCGAGCAAATTATACAATACCTACAccttttatattta
tttacaaTTTCCCATAATATGATATTATACAATAAATTACATATAAGTTA
CATAAGCAATCTTTAACCTATGAGAAAAAGTTGTCATATGAAATACTGAA
GTTTTACCCATTTAGTATCACTGGTACTATATGAGATCGCACAATTCTTT
CGCCTGTACCATTAAGTCTGGACCTAGGAGCCCTGCGAATCATGCTGCCC
TGATTTTCACCCCATGCTGCCCTGATTTTCACCCCGCCTGAATAGATATC
TTGTCcagatatgaattttttcttaattgGGTGTGTACTCTCATTACGGA
GTGATCACTTAATGGGTTAACGAATTTAAAAGGGATATTTTCAATGAGGC
ATATACACATAAGTTTTCCAGTAGGATTTTTTCGGCTTCTTTTGTTGGCA
AGGAGCTGTGTAATACAGTCCCAATTTccatgaaaatagaaatttcagAG
ATGAGAGATAGAATCGAATCTAATAAGAGAAGATTGTTCGAGTCAATTTT
AGGCCCTAACATATATCAGGGCTCGCTCCACCTGTGGGCTAGGTTTGTGG
CATAGCttcctcatttttgaaaaactttaaaagttaGTTATTGGTtagtc
aattttcaaaatctatacTTCATACTTCCAAAGTTTCATTTCTTTGCAAA
TCGACAATTTTGAGTCATAGAGagggtcaaaatatttgttAGTTCACTTG
TATTTAAGTTTGTTCTCGAGTTTGTAAAGCATAGTCAATCACGTGCCCAG
AACACAGGAAATAAGGTCAGTATAAGGCATATTGGTGAGAGAATCAAGAA
ATCTTCGTTGTGTCTTTTAGGTCAACTGTATTTTCATCAGCCTCTTCACG
TTTCAAATCATGTTGCAGGCCCTGAATATGGCGAAGGGTGATACACTATA
GTAACTTTGTTTGTTCACTTTTGTTTAAGTTTGTAAGCACAGTTGTATTC
TTCATTGAATTTTTAGCCGTTTCTCTACTACATGTTGAATGATGACGTGA
CCCGACTAAGTCATGTGCTTCCGTAATTAACGTGGTCGCAAATTGCATAG
TCCTTTGTTCCTGATTGGACAATTTATAATACAATTGTCTACAAACTTTA
CGGAATTGTTTATTGCAGATGACGTAAATACACGGGTTAGTTGTTGAATT
CAAGGGCGGGAGAAAATTGATAAGAACAAAATGTAGTACCACCCACCACG
ATTCATTGCGTTGTTTTCTCCAGAATTCTTTAGCATGAAATATAGTAAGA
ATATAGAAAATGGTTGGATACCAACATATACAGTAAACGACAAAGACGAC
AACGATAGATCTCAGAGTTCTGTACTGGCGTTTCTTACGGCGTTTCTCGC
GTGATTTTTTACTTTGATGGTTCAAATCCATGACTTCCATTTTGGCAATT
TCCAGAATATGATGCGATGCAGTTTTGTAAACATACGCATACATATAAAC
CATGACAAAAAGGGGGATGATAAAACATCCAATATACATTGATGTATAAA
AAGTCTCGTTTCTTGCTGCGCAGATATTACCACGACTAATGATTGCTATT
TTAGATGGATCATCCCATTGGAAGATCAACATTGAAGCCATAAACGCTGA
GAAACACCAAATACCAGCGATAACGATTTTGACACGACGTTTAGTTGCTA
GAGAGTTATATTGATAAACATAACGAAGAGATAAATATCGATCCAAACCA
AtgataaataaatgaataacAGACGTTATTGATAGGAATGATTCTTCCAG
GTTGTACGTCCAACATGCTCGATCACCAAGACATAAGAATCCACTTTTCC
ATTGGATCCTCGCATTGAAAGGCATTGATACCAATCCAACTAATGTATCT
GCGACTGCCAGAGATGAGAGGAACAAGAACGtagtttgttttttaagtgA
TTTGGAAGATGCTACAACAGCAATGACCAAGAGATTACCAATAACAGTTA
TTGGTATGAAGATAATGAGAAATGCAAATGCAATATTGTTTGTCATCTTC
CTTGGTAGATCACAGAAATCTACCATCATTCGGTTTGGTGGTTGTAAAGT
AGTGTTGGTAGAGTTGGTATACAGCATGTTGTATCTGTTGATCAACGTTG
TATTCAtcatgtttttgtgtgaatgtTCAATGTTGATGCTGTTTTCTAAG
CTGGCTCTcctattttttgtttgtttctgcTTGGCTCTcctattttttgt
ttgtttctatGCTTTTAatactaaaa
Run BLAST on NCBI

transcript from alignment at sc0001370:10321..14153+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035822 ID=TCONS_00035822|Name=TCONS_00035822|organism=Clytia hemisphaerica|type=transcript|length=3833bp|location=Sequence derived from alignment at sc0001370:10321..14153+ (Clytia hemisphaerica)
NTGTTCCTGATGACCCTTATTACGCATTCCGTGATACGAACGATCATTCG
AAGTACGCTCTTAGTGACACGGCTGACAATCCGTACGTCTGTATTGGGGA
TATTAACAGACAGGTAAgaaatgtttttagatttttaatatCAATTTATG
AAAGTAACAAAAGATTTGATTAATTTTCATATAAATTTCGATCCTTGATC
ATATTATAACCGAAACTTGGCTTCGCTAGCAATATAACCCTGACTAGATT
ATGATAATTTCTGAATCTTTCTTAACTCTAACTaaactatgctatagtct
aagagaaatcactatctaagaaaaaaagcccaaagccgaagaaaattcgt
aAAATCTACCGAAAAGAGTTAAAAGCCGATAGAGTTTGCCAGTCGTTATT
TCGAGACTTTCGGAGAGACCATCTGTTTATGTACGAAAAGTTGTCATGAC
AAAATTAGAACAGGGGGTAATTTTTGGAACTTGCACTTGAAACTCGTCCT
TAGTCCTTTACACCACTTTTAAGGATTATAAAGTGAGGACTCTGTTCaag
ctgaaaattgaaaatcaacccTTTAAAGACAATAAATTGTGTTAGTTTTG
ATAGTAAGAgtttttcacccaaaaattGGTCGATTTTTGTTAAATGCTGA
TAAAATAGATCATCCTTAGaaattttgagttgaaaaaaGACATACCTGTA
GCCCATATTGTCCAGATGAGTCTCCCTCCCAAAATCACAATTTATacttc
acattttttcaacttttcagaCCGGACAATTCAAAAGAGGTGGTGGTACC
GTTTGCACCAAGAATGCATCATTATGGAAAACATTTAGAGGAATGGTTGA
TGACATCAATTCATGTCAAAATCAAGATCAATTTGAAGATATCTTTGACA
TGATATAGGAATCAAAAATTTATCACTCGGAattgtgaattttttaacca
taaatttagaaaaattattttcgggATGAAAAAGTCCAAGTAAATCCGAA
TAACTTTTTGCACATTATATtaggccattccattttatatccatacaggg
ggtggacgaacatatCCAGGAGGTAATTTACAGGGggcattttttcattt
ttccagtagGTCAaaggttattctaaaattttcaggaGGTAATAGACTAA
TTTTTGTTCGTCCACCCTTACTTTTAAGgtacgaaaataatttttccaag
acttctttttcaaatcttgtcattttccagggggtattaccacatttcta
aaaatctttttttgccttaaaaaggttcgtccagcccccctgtatggaaa
tttaatggaacagcccatttgaTAGTCTGATTTAATTTTCGTTGTTGTca
aatttttcttgctttacTACGATAAAATTTAGATTATGATTTACATTTTC
CCGGCAATTCACCAATTCTGTCGCGTCTTTGATTTTTCACATTCTATTGT
CAGAATTTCACCATTACATATTTTATCTTAATTACATGATGTTTCATAAT
TGAAAAATCTACCTTTTGCTTAATTTTCGCCGTCTacaatttttcattaa
tttaatTTACGTTTATATTTCGAGCAAATTATACAATACCTACAcctttt
atatttatttacaaTTTCCCATAATATGATATTATACAATAAATTACATA
TAAGTTACATAAGCAATCTTTAACCTATGAGAAAAAGTTGTCATATGAAA
TACTGAAGTTTTACCCATTTAGTATCACTGGTACTATATGAGATCGCACA
ATTCTTTCGCCTGTACCATTAAGTCTGGACCTAGGAGCCCTGCGAATCAT
GCTGCCCTGATTTTCACCCCATGCTGCCCTGATTTTCACCCCGCCTGAAT
AGATATCTTGTCcagatatgaattttttcttaattgGGTGTGTACTCTCA
TTACGGAGTGATCACTTAATGGGTTAACGAATTTAAAAGGGATATTTTCA
ATGAGGCATATACACATAAGTTTTCCAGTAGGATTTTTTCGGCTTCTTTT
GTTGGCAAGGAGCTGTGTAATACAGTCCCAATTTccatgaaaatagaaat
ttcagAGATGAGAGATAGAATCGAATCTAATAAGAGAAGATTGTTCGAGT
CAATTTTAGGCCCTAACATATATCAGGGCTCGCTCCACCTGTGGGCTAGG
TTTGTGGCATAGCttcctcatttttgaaaaactttaaaagttaGTTATTG
GTtagtcaattttcaaaatctatacTTCATACTTCCAAAGTTTCATTTCT
TTGCAAATCGACAATTTTGAGTCATAGAGagggtcaaaatatttgttAGT
TCACTTGTATTTAAGTTTGTTCTCGAGTTTGTAAAGCATAGTCAATCACG
TGCCCAGAACACAGGAAATAAGGTCAGTATAAGGCATATTGGTGAGAGAA
TCAAGAAATCTTCGTTGTGTCTTTTAGGTCAACTGTATTTTCATCAGCCT
CTTCACGTTTCAAATCATGTTGCAGGCCCTGAATATGGCGAAGGGTGATA
CACTATAGTAACTTTGTTTGTTCACTTTTGTTTAAGTTTGTAAGCACAGT
TGTATTCTTCATTGAATTTTTAGCCGTTTCTCTACTACATGTTGAATGAT
GACGTGACCCGACTAAGTCATGTGCTTCCGTAATTAACGTGGTCGCAAAT
TGCATAGTCCTTTGTTCCTGATTGGACAATTTATAATACAATTGTCTACA
AACTTTACGGAATTGTTTATTGCAGATGACGTAAATACACGGGTTAGTTG
TTGAATTCAAGGGCGGGAGAAAATTGATAAGAACAAAATGTAGTACCACC
CACCACGATTCATTGCGTTGTTTTCTCCAGAATTCTTTAGCATGAAATAT
AGTAAGAATATAGAAAATGGTTGGATACCAACATATACAGTAAACGACAA
AGACGACAACGATAGATCTCAGAGTTCTGTACTGGCGTTTCTTACGGCGT
TTCTCGCGTGATTTTTTACTTTGATGGTTCAAATCCATGACTTCCATTTT
GGCAATTTCCAGAATATGATGCGATGCAGTTTTGTAAACATACGCATACA
TATAAACCATGACAAAAAGGGGGATGATAAAACATCCAATATACATTGAT
GTATAAAAAGTCTCGTTTCTTGCTGCGCAGATATTACCACGACTAATGAT
TGCTATTTTAGATGGATCATCCCATTGGAAGATCAACATTGAAGCCATAA
ACGCTGAGAAACACCAAATACCAGCGATAACGATTTTGACACGACGTTTA
GTTGCTAGAGAGTTATATTGATAAACATAACGAAGAGATAAATATCGATC
CAAACCAAtgataaataaatgaataacAGACGTTATTGATAGGAATGATT
CTTCCAGGTTGTACGTCCAACATGCTCGATCACCAAGACATAAGAATCCA
CTTTTCCATTGGATCCTCGCATTGAAAGGCATTGATACCAATCCAACTAA
TGTATCTGCGACTGCCAGAGATGAGAGGAACAAGAACGtagtttgttttt
taagtgATTTGGAAGATGCTACAACAGCAATGACCAAGAGATTACCAATA
ACAGTTATTGGTATGAAGATAATGAGAAATGCAAATGCAATATTGTTTGT
CATCTTCCTTGGTAGATCACAGAAATCTACCATCATTCGGTTTGGTGGTT
GTAAAGTAGTGTTGGTAGAGTTGGTATACAGCATGTTGTATCTGTTGATC
AACGTTGTATTCAtcatgtttttgtgtgaatgtTCAATGTTGATGCTGTT
TTCTAAGCTGGCTCTcctattttttgtttgtttctgcTTGGCTCTcctat
tttttgtttgtttctatGCTTTTAatactaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021031XLOC_021031Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035822-exon-sc0001370-1491911889:10321..10433TCONS_00035822-exon-sc0001370-1491911889:10321..10433Clytia hemisphaericaexon
TCONS_00035822-exon-sc0001370-1510915933:10321..10433TCONS_00035822-exon-sc0001370-1510915933:10321..10433Clytia hemisphaericaexon
TCONS_00035822-exon-sc0001370-1575043694:10321..10433TCONS_00035822-exon-sc0001370-1575043694:10321..10433Clytia hemisphaericaexon
TCONS_00035822-exon-sc0001370-1491911889:11091..14153TCONS_00035822-exon-sc0001370-1491911889:11091..14153Clytia hemisphaericaexon
TCONS_00035822-exon-sc0001370-1510915933:11091..14153TCONS_00035822-exon-sc0001370-1510915933:11091..14153Clytia hemisphaericaexon
TCONS_00035822-exon-sc0001370-1575043694:11091..14153TCONS_00035822-exon-sc0001370-1575043694:11091..14153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001370supercontigsc0001370:10321..14153 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12309	0.0360282	0.0833191	0.0850606	0.193051	0.296767	4.28346	4.11115	0.807863	0.981966	0.321006	0.448931	0.563187	0.383611	0.205689	0.135862	0.158253	0.52445	0.289976	0.90776	0.491253	0.726646	0.275703	0.344623	0.563167	1.14081	0.204194	0.272864	0.070981	0.104178
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00035822 vs. Swiss-Prot (Human)
Match: 5HT4R (5-hydroxytryptamine receptor 4 OS=Homo sapiens GN=HTR4 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.709e-19
Identity = 90/340 (26.47%), Postives = 148/340 (43.53%), Query Frame = -3 
Query: 1942 TVIGNLLVIAVVASSKSLKKQTTFLFLSSLAVADTLVGLVSMPFNARIQWKSGFLCLGDRACWTYNLEESFLSITSVIHLFIIGLDRYLSL-RYVYQYNSLATKRRVKIVIAGIWCFSAFMASMLIFQ-WDDPSKIAIISRGNICAARNETFYTSMY-----IGC----FIIPLFVMVYMYAYVYKTASHHILEIAKMEVMDLNHXXXXXXXXXXXXXXXRT----LRSIVVVFVVYCICWYPTIFYILTIFHAKEFWRKQRNESWWVVLHFVLINFLPPLNSTTNPCIYVICNKQFRKV------CRQLYYKLSNQEQRTMQFATTLITEAHDLVGSRH 2898
             ++GNLLV+  V   + L+K  T  F+ SLA AD LV ++ MPF A I+        G+  C      +  L+  S+ HL  I LDRY ++      Y +  T  R+ +++ G W    F++ + I Q W++   I +I +       N T+   M      I C    F IP  +MV  Y  +Y TA  H  +I  ++    + +S+     +    + RT     +++ ++   +C+CW P  F++  I     F         W    F+ + +   +NS  NP +Y   NK FR+       C    Y+  +   +T+  +TT I       GS H
Sbjct:   33 AILGNLLVMVAVCWDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGA-IELVQDIWIYGEVFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVIPTFISFLPIMQGWNNIGIIDLIEKRKFNQNSNSTYCVFMVNKPYAITCSVVAFYIPFLLMVLAYYRIYVTAKEHAHQIQMLQRAGASSESRPQSADQHSTHRMRTETKAAKTLCIIMGCFCLCWAP--FFVTNI--VDPFIDYTVPGQVWTA--FLWLGY---INSGLNPFLYAFLNKSFRRAFLIILCCDDERYRRPSILGQTVPCSTTTIN------GSTH 356
The following BLAST results are available for this feature:
BLAST of TCONS_00035822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
5HT4R5.709e-1926.475-hydroxytryptamine receptor 4 OS=Homo sapiens GN=... [more]
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