TCONS_00034922 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034922
Unique NameTCONS_00034922
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1035

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034922 ID=TCONS_00034922|Name=TCONS_00034922|organism=Clytia hemisphaerica|type=transcript|length=1035bp
TTTGTTGATTATCGAAGTGTTTCTAATCCCTTTCACCACTTCTGTATGGA
GTCAACATTTGTGGAAACTTCAGTCCTGGACACCTTGCTCAAGAACATGC
CAAGGAGaGAAAGCCTGTAACTATGGAATTCATTGCCAAGCTTCAATACT
AAGACCACAAGCCTTGAAACTATACGAAGGTTATTGGTTTAAATCCGAAG
AGTTTGGACAATGCACAACAACGTGTGGACGGGGCGTTAGATCAAGGCCT
GTCATGTGTATTTCACGGACCGAACTGAAAATGCTAGATGACTCTAAATG
TCCGGCAGACGAGAAACCAATCGGATCGATATTATGTGGAAATAAAGAAT
GTCCGGTAATAGCTGATTGGAAGATCGGAAATTGGAGTGAGTGTTCATCG
ACTACCTGTGATGGAATACGAACGAGAACGGTGAATTGTCAAAAAGAGAG
CGGGGAAGAAACCTTGCACCGCCACTGTGAAAAGAAACGCCCAAAGCCGA
TCCAAGAAAAAATCTGCAGTCCACCATGTGCTGTATGGGTGGTAGGCAGT
TGGGGAAAGTGTCGTTATAATGCAAAGTTGAAGAAATGTTCGGACGCAAA
ACAAACGCGTTGTGTGACATGTGTGGACAGGCGTACGATGCAGGTGTCAG
ATCAATGCTCGTTGGATCAAAAACCatctttaaaaagaaattgtaCATAT
AAAGATTGTTGATCACTTGTAAATAAACTCATCCAGTATTTCTcagcatt
attttcaaatttcaaatatcATGACGAAATGTTCTATACGGAAACACCCA
AAACAGCCCGGACGTTTGCCattagttttattgtttaaattcaatatTAA
TGGCAAATTCTCGTTGTTTTTTGGGTGATTTCCTGTagaacattacgtca
tgaatatcacgaacGAATTAACTGggatttaaaatatattttatgtcTAA
CGATGTCTTTTAGTCCACGAGGTCATAAACAATACCATGtgtgtgtcaca
gacccggtgggacacCCAAACCACTCGAAAATTAG
Run BLAST on NCBI

transcript from alignment at sc0001231:52498..55465-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034922 ID=TCONS_00034922|Name=TCONS_00034922|organism=Clytia hemisphaerica|type=transcript|length=2968bp|location=Sequence derived from alignment at sc0001231:52498..55465- (Clytia hemisphaerica)
TTTGTTGATTATCGAAGTGTTTCTAATCCCTTTCACCACTTCTGTATGGA
GTCAACATTTGTGGAAACTTCAGTCCTGGACACCTTGCTCAAGAACATGC
CAAGGAGGTCAGTAAAATATGTTCAGAAATATCTCATTTGGAACAGCAAG
TACCTAAGAAATCTTAAAATTCTATACCTTTAAAATAAAGTCATTAGGTA
AATCGAGGCTAGACATATTGTATACCTTTGGTTAAAGGCAAATTAAATCG
AAGTTTGAAGAATATTAACGAGCACCTCGCAAAAAACCGGAATTTTCGTC
TCGTTTCTTGGTGAATTCAACTTTGATGATTTTCTAGAAAACGAAGCCTT
TCAAGTGTCCTGACGCAAACTCGATTTTCCCTACTGCAAGAGCTTCAAAA
GTTTAAAGTAACGTCAAAACATCTAATGTTTTGAGTCCGAAAGCCTGAGC
TAAAAACATTAGAAAAAGTCGCAAATTGGAAGACTTGATTGGGTAGAAAA
GACGGAGAGTGGTCTAATTCAGGGCTAGAAAAATTTCTACTCAGCCTGCT
TTTTTGTCCGAAAAGTCAAGTACACAGTTTCACAATCTTTGTAATTACTC
ACTACTCCACCCCCCCCCGCTAATTAATTTTTGGGAAAATGGCTATTAGG
TACCCGAGAGTAACTCGTATTTTGAGTACATAAGAAACGTGAGAGCAACG
ATAAATGCAAGAGGTCTTGAAAAATGAATAAAAATTCACTCATCTCTGAT
TTCCAGGTTCAAAGAAAGCAGTATTCGGTTGTTTTGATATTCTTCAAGAG
AAGTTTGTCAATGAAAGATTTTGTACTGGATACACAAAATTTCATTTAGA
GAAAGCCTGTAACTATGGAATTCATTGCCAAGCTTCAATACTAAGGTAAC
TTCGAGGAAGCGAATTTTCACTTTCTTATCTTATAATGAAAAGTTTTTGA
TATGCTCAAAATATGAATAACTTAAATAGTAGCCATTGACCACCATGAGC
CAAATCTACTTCACTTAAAATTTATCGTTATGATCTTTGACTTTAACTAT
GTACTGAGCTAGCCTAGAAATCTAAGCTAGTTTGAATCAGTCACTAGAAA
ACTAAATTTCTAGAATCCGAGGCTAACATTCGTGATATCAATGAAGTATA
AGCCCGAAGGGCTAGGGGTCAATCTCTAACCTTTCTCTGGCAAAAAAATG
AAGCCTTAAAATATGCGCCGAATTTTTGACCACGGATTGAATCTAGCGAT
TCCTTTGTTTTCGAGTGGTATTTTTTTCGAAATTTAAGCACAATTTTTAG
TTTAAATCTGTCATTTGTGTAAAAACCAGGCGCACCGCGCTAGGCCACGC
AACTTCAGCAGGATTTGGTAGGCTTCAAATTCTACCAAGGAGATTCGATT
CTAGCCCTTTGGGCTTATACTTCAATGCGTGATATGAAAGAATCTTTAAA
GCACCGATATTACCGATAACTCTTTACTGCCGTAAGCCGCATCTTAGCTT
TAATCTTATGTTTTAGTCAATAGTTAGGCTTTGATATTTGATTTCCTTCC
TCCATAGACCACAAGCCTTGAAACTATACGAAGGTTATTGGTTTAAATCC
GAAGAGTTTGGACAATGCACAACAACGTGTGGACGGGGCGTTAGATCAAG
GCCTGTCATGTGTATTTCACGGACCGAACTGAAAATGCTAGATGACTCTA
AATGTCCGGCAGACGAGAAACCAATCGGATCGATATTATGTGGAAATAAA
GAATGTCCGGTAATAGCTGATTGGAAGATCGGAAATTGGAGTGAGGTAAT
TGATTGAGCTTCGCTTTTGTACGAAAGTATTTAACTGTATGTTTTGTAGG
TGAGTAAAGTAAATCATGTATTATTCTTTAGAGATTCTTTATGCCCCACA
TTTTTTATTTTACTGGATGTATGTGGTAAAAATCTTCTCGTGAGAAAAAT
CATAAAAAAGCGGGCTCAGGGACTGAGGACTATCTTTCCCCTTTAAAAGT
GACTTTTGAAGATCAAAACCTTATACACAACCTTTACCCTTTCTTTAGTG
TTCATCGACTACCTGTGATGGAATACGAACGAGAACGGTGAATTGTCAAA
AAGAGAGCGGGGAAGAAACCTTGCACCGCCACTGTGAAAAGAAACGCCCA
AAGCCGATCCAAGAAAAAATCTGCAGTCCACCATGTGCTGTATGGGTGGT
AGGCAGTTGGGGAAAGGTAAGCAAGCACAGTAGAGTCTCCAGAACTCGAA
ACTCTATAGCTCGAATATGTATCCTTAACTCGAATAACTTCCAGGTTTAT
CAGCGGATTTAAGATAGCAAACCCTATAAACAAGTTTTATTTTAACTCGA
ACAAATTTCCCGCGTGTTTTCGAATCGTGAAGACTTTAATACAAAGAGAC
GCAACATTTTTGTAGAGGAAAGCAAAATTTCAGGGAATTTTATATGATCA
AGTTGGAAGAATAAATAAATGATCATACCTCATTTTCCTTAGTGTCGTTA
TAATGCAAAGTTGAAGAAATGTTCGGACGCAAAACAAACGCGTTGTGTGA
CATGTGTGGACAGGCGTACGATGCAGGTGTCAGATCAATGCTCGTTGGAT
CAAAAACCATCTTTAAAAAGAAATTGTACATATAAAGATTGTTGATCACT
TGTAAATAAACTCATCCAGTATTTCTCAGCATTATTTTCAAATTTCAAAT
ATCATGACGAAATGTTCTATACGGAAACACCCAAAACAGCCCGGACGTTT
GCCATTAGTTTTATTGTTTAAATTCAATATTAATGGCAAATTCTCGTTGT
TTTTTGGGTGATTTCCTGTAGAACATTACGTCATGAATATCACGAACGAA
TTAACTGGGATTTAAAATATATTTTATGTCTAACGATGTCTTTTAGTCCA
CGAGGTCATAAACAATACCATGTGTGTGTCACAGACCCGGTGGGACACCC
AAACCACTCGAAAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020323XLOC_020323Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034922-exon-sc0001231-1575043694:55359..55465TCONS_00034922-exon-sc0001231-1575043694:55359..55465Clytia hemisphaericaexon
TCONS_00034922-exon-sc0001231-1575043694:54571..54616TCONS_00034922-exon-sc0001231-1575043694:54571..54616Clytia hemisphaericaexon
TCONS_00034922-exon-sc0001231-1575043694:53671..53908TCONS_00034922-exon-sc0001231-1575043694:53671..53908Clytia hemisphaericaexon
TCONS_00034922-exon-sc0001231-1575043694:53250..53417TCONS_00034922-exon-sc0001231-1575043694:53250..53417Clytia hemisphaericaexon
TCONS_00034922-exon-sc0001231-1575043694:52498..52973TCONS_00034922-exon-sc0001231-1575043694:52498..52973Clytia hemisphaericaexon
TCONS_00034922-exon-sc0001231-1510915933:55359..55465TCONS_00034922-exon-sc0001231-1510915933:55359..55465Clytia hemisphaericaexon
TCONS_00034922-exon-sc0001231-1510915933:54571..54616TCONS_00034922-exon-sc0001231-1510915933:54571..54616Clytia hemisphaericaexon
TCONS_00034922-exon-sc0001231-1510915933:53671..53908TCONS_00034922-exon-sc0001231-1510915933:53671..53908Clytia hemisphaericaexon
TCONS_00034922-exon-sc0001231-1510915933:53250..53417TCONS_00034922-exon-sc0001231-1510915933:53250..53417Clytia hemisphaericaexon
TCONS_00034922-exon-sc0001231-1510915933:52498..52973TCONS_00034922-exon-sc0001231-1510915933:52498..52973Clytia hemisphaericaexon
TCONS_00034922-exon-sc0001231-1491911889:55359..55465TCONS_00034922-exon-sc0001231-1491911889:55359..55465Clytia hemisphaericaexon
TCONS_00034922-exon-sc0001231-1491911889:54571..54616TCONS_00034922-exon-sc0001231-1491911889:54571..54616Clytia hemisphaericaexon
TCONS_00034922-exon-sc0001231-1491911889:53671..53908TCONS_00034922-exon-sc0001231-1491911889:53671..53908Clytia hemisphaericaexon
TCONS_00034922-exon-sc0001231-1491911889:53250..53417TCONS_00034922-exon-sc0001231-1491911889:53250..53417Clytia hemisphaericaexon
TCONS_00034922-exon-sc0001231-1491911889:52498..52973TCONS_00034922-exon-sc0001231-1491911889:52498..52973Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001231supercontigsc0001231:52498..55465 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.305023	0.47888	0.255126	0.241144	0.289611	0.0915418	0.220883	0.310181	0	0	0	0.113375	0.142828	0	0.102191	0	0	0	0.136974	0	5.93004e-09	1.29154e-05	3.04327	5.53009e-06	12.1348	6.50289	0.311853	0	0	0.00614287
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034922 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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