TCONS_00034685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034685
Unique NameTCONS_00034685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034685 ID=TCONS_00034685|Name=TCONS_00034685|organism=Clytia hemisphaerica|type=transcript|length=2421bp
ATAAGGGGGACAGGAAACTATGGCATAAGTTGGTTTCATTTCATCAATCC
CGTCTTATCCTTCTTCAGAGATAagtaaaatagaaaaagaaaagatgggC
AGAATTACTGATCtaaaaatgattgtttttctctttaACCGCTAAGTAAA
GAATTTAGTCCCAGTCATTGACTTCCTATTTCTTCCTATCTGTAAAAAAG
GTTGATAGAAAAAAGAAAGGGTTGCCAAACATTAGACAAACTTAGGGTAG
TGGTGCACTGAACATTTTGGAATGTTTTATTGGTAATAagtttcttgata
tttttcagtggatgataaaatttaaaaaaagcaaatgattcaaaatgacc
AACGCATATTCATTTGACGGTGTTATTGTCCTTGGATTGTTGTTGATTTG
CACATGTGCGTACGTTAGAAGAGTACCAAAACTTAAACAATTTTTCTTAA
CCGAAAAGAAAGGCTTGTGGGGTGTCTTTTACAAAGCTTCTGTTATTGGT
ATTCGTCTACACTGGTTGGTTGCTATATCTTGTATCACCATGGGTTTATA
tattatgtttttaaaatagatCTTTTGATTTAATCATCCCTGTTTTGTTT
TTGGTGCTGGTTTACTGTGCATTATGAATCCATCACATTCTACACCCTCA
TCAGATACATCCATAAAACGAAAGACTTCTACACCAAATAGTTGTTTCAA
tagcaaaattggaaaatttgttAATGTTAACCACTCAACCATTTTACCAT
CAACCTGCTCACAAAAAGCTTATCGGACCCATCAACCAGACTCTGCAGAC
AAGACTCCCCAAACTTCCAAGATTTCAATACATGACACTTTAATGCAGTC
TTTTATAAAAAGACAAAGCTTGCACAATGACACCTCCACCAGATCTGATT
TATCAGTAAAAGAAACAGAATCTACATGGTCTGTTTTTAGAAAATCGAAA
ACCCTTAGCAATGTCAATTGTATAGAACACATCAAACATTTTGATTCAGT
TAACAACTCTGCTGACATTAGCCAAAACAAATTAATCAAATATAGACCAG
GAACTACAGCTCCTGTAAATTCATCTAAAATTGATTGGGAGAACCCAATT
CTCGGTACATCAGACCAGAGACTTCCAAGTGCAACTTCGACCAAAGTCTT
ATcaagaaataattttgacaGAATATACAGCTCTTTTCGATTCAATAAAG
AAATGCTGCTTGGTGCTAAAGTGATAGGTCAAGTTGACAATAGATTTATA
GCGTGTTTATTGCCAGATGATGCTGAGGCTGgtgaaaaaattcttgtttT
GATGGACCAGCATGCAGCACACGAGAGAGTTCGATTAGAAAAACTTCTAA
AACAAATTGGATATTATGAACCAGAGACATGTCGACAGAATTTGAAATCG
CAAATATGTTCACTCTCTCCACCCGCTGAAATGTTTTTCACTGATAGCAA
TATTGACCAGCTTCTTCATTTCAGCACAGAGTTCCACAAAGCTGGTATCT
ATTTCACCACTATGAAGACCAAAAACCACTCCAATACAGATCTTAGTCAT
TCTTATAGAGTACTGGTCTCCTCCGTACCATCCATCTTTGTCAATGTGTG
TCAACCGCAATCTAAAGCTAGAGGTACATCCATCAATGTGAATCTCCTGA
AAGAATACATACTTGAGCAAAGTAAAATGATGAGAACGTGCGCCAGTAAA
TGTAGTATAGTGTCACCAGTTATATTTAAGGTTTTAGCATCTTACGCTTG
CCATGGTGCTATTAAATTTGGGGACCCACTTGAGCATGAAACTTGCATCA
AAATAATAAACGAGTTGTCACAATGCCAGCTACCCTTTCAATGCGCGCAT
GGCCGACCTTCTATTGCACCTTTGGTAAGATTATCAATGCTGAAATCATT
TCTTGATCGAGCTGGTTCCAAAGGTAAAAGAAAACCTAATTTACAAAATC
TAAAAAGAAGAATGAAGCAGTGATGTCTTATTTGAATGAATTGTTAGCAA
TAATTTATTTTCCTCTTGACATCACAAAGGTTTGAccacatttttttttg
aaacttggttaaaaatgtttttctagaGTCCTTTCGATTTTGAGCTTTTT
CAGATGATTGTTTTCGATTTTCTTCATAATTGGTAAAATGAGCTTTCTTT
CACAGCAGAATTGAgatcaaacttttgaaattaaatttattcTAGTTGGG
TTTAGTTGTAGTTGATTNTAATTGGTAAAATGAGCTTTCTTTCACAGCAG
AATTGAgatcaaacttttgaaattaaatttattcTAGTTGGGTTTAGTTG
TAGTTGATTGTAATGGTGGATTTTGTGTTTACGAAatactttgatatttt
atatttattgCCCATAATTAATTATTCctattttatatatattttaatat
cataaaatgtttttagaatAT
Run BLAST on NCBI

protein sequence of TCONS_00034685-protein

>TCONS_00034685-protein ID=TCONS_00034685-protein|Name=TCONS_00034685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=449bp
MNPSHSTPSSDTSIKRKTSTPNSCFNSKIGKFVNVNHSTILPSTCSQKAY
RTHQPDSADKTPQTSKISIHDTLMQSFIKRQSLHNDTSTRSDLSVKETES
TWSVFRKSKTLSNVNCIEHIKHFDSVNNSADISQNKLIKYRPGTTAPVNS
SKIDWENPILGTSDQRLPSATSTKVLSRNNFDRIYSSFRFNKEMLLGAKV
IGQVDNRFIACLLPDDAEAGEKILVLMDQHAAHERVRLEKLLKQIGYYEP
ETCRQNLKSQICSLSPPAEMFFTDSNIDQLLHFSTEFHKAGIYFTTMKTK
NHSNTDLSHSYRVLVSSVPSIFVNVCQPQSKARGTSINVNLLKEYILEQS
KMMRTCASKCSIVSPVIFKVLASYACHGAIKFGDPLEHETCIKIINELSQ
CQLPFQCAHGRPSIAPLVRLSMLKSFLDRAGSKGKRKPNLQNLKRRMKQ
Run BLAST on NCBI

transcript from alignment at sc0001204:38701..41121

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034685 ID=TCONS_00034685|Name=TCONS_00034685|organism=Clytia hemisphaerica|type=transcript|length=2421bp|location=Sequence derived from alignment at sc0001204:38701..41121 (Clytia hemisphaerica)
ATattctaaaaacattttatgatattaaaatatatataaaatagGAATAA
TTAATTATGGGcaataaatataaaatatcaaagtatTTCGTAAACACAAA
ATCCACCATTACAATCAACTACAACTAAACCCAACTAgaataaatttaat
ttcaaaagtttgatcTCAATTCTGCTGTGAAAGAAAGCTCATTTTACCAA
TTANAATCAACTACAACTAAACCCAACTAgaataaatttaatttcaaaag
tttgatcTCAATTCTGCTGTGAAAGAAAGCTCATTTTACCAATTATGAAG
AAAATCGAAAACAATCATCTGAAAAAGCTCAAAATCGAAAGGACtctaga
aaaacatttttaaccaagtttcaaaaaaaaatgtggTCAAACCTTTGTGA
TGTCAAGAGGAAAATAAATTATTGCTAACAATTCATTCAAATAAGACATC
ACTGCTTCATTCTTCTTTTTAGATTTTGTAAATTAGGTTTTCTTTTACCT
TTGGAACCAGCTCGATCAAGAAATGATTTCAGCATTGATAATCTTACCAA
AGGTGCAATAGAAGGTCGGCCATGCGCGCATTGAAAGGGTAGCTGGCATT
GTGACAACTCGTTTATTATTTTGATGCAAGTTTCATGCTCAAGTGGGTCC
CCAAATTTAATAGCACCATGGCAAGCGTAAGATGCTAAAACCTTAAATAT
AACTGGTGACACTATACTACATTTACTGGCGCACGTTCTCATCATTTTAC
TTTGCTCAAGTATGTATTCTTTCAGGAGATTCACATTGATGGATGTACCT
CTAGCTTTAGATTGCGGTTGACACACATTGACAAAGATGGATGGTACGGA
GGAGACCAGTACTCTATAAGAATGACTAAGATCTGTATTGGAGTGGTTTT
TGGTCTTCATAGTGGTGAAATAGATACCAGCTTTGTGGAACTCTGTGCTG
AAATGAAGAAGCTGGTCAATATTGCTATCAGTGAAAAACATTTCAGCGGG
TGGAGAGAGTGAACATATTTGCGATTTCAAATTCTGTCGACATGTCTCTG
GTTCATAATATCCAATTTGTTTTAGAAGTTTTTCTAATCGAACTCTCTCG
TGTGCTGCATGCTGGTCCATCAaaacaagaattttttcacCAGCCTCAGC
ATCATCTGGCAATAAACACGCTATAAATCTATTGTCAACTTGACCTATCA
CTTTAGCACCAAGCAGCATTTCTTTATTGAATCGAAAAGAGCTGTATATT
CtgtcaaaattatttcttgATAAGACTTTGGTCGAAGTTGCACTTGGAAG
TCTCTGGTCTGATGTACCGAGAATTGGGTTCTCCCAATCAATTTTAGATG
AATTTACAGGAGCTGTAGTTCCTGGTCTATATTTGATTAATTTGTTTTGG
CTAATGTCAGCAGAGTTGTTAACTGAATCAAAATGTTTGATGTGTTCTAT
ACAATTGACATTGCTAAGGGTTTTCGATTTTCTAAAAACAGACCATGTAG
ATTCTGTTTCTTTTACTGATAAATCAGATCTGGTGGAGGTGTCATTGTGC
AAGCTTTGTCTTTTTATAAAAGACTGCATTAAAGTGTCATGTATTGAAAT
CTTGGAAGTTTGGGGAGTCTTGTCTGCAGAGTCTGGTTGATGGGTCCGAT
AAGCTTTTTGTGAGCAGGTTGATGGTAAAATGGTTGAGTGGTTAACATTa
acaaattttccaattttgctaTTGAAACAACTATTTGGTGTAGAAGTCTT
TCGTTTTATGGATGTATCTGATGAGGGTGTAGAATGTGATGGATTCATAA
TGCACAGTAAACCAGCACCAAAAACAAAACAGGGATGATTAAATCAAAAG
atctattttaaaaacataataTATAAACCCATGGTGATACAAGATATAGC
AACCAACCAGTGTAGACGAATACCAATAACAGAAGCTTTGTAAAAGACAC
CCCACAAGCCTTTCTTTTCGGTTAAGAAAAATTGTTTAAGTTTTGGTACT
CTTCTAACGTACGCACATGTGCAAATCAACAACAATCCAAGGACAATAAC
ACCGTCAAATGAATATGCGTTggtcattttgaatcatttgctttttttaa
attttatcatccactgaaaaatatcaagaaactTATTACCAATAAAACAT
TCCAAAATGTTCAGTGCACCACTACCCTAAGTTTGTCTAATGTTTGGCAA
CCCTTTCTTTTTTCTATCAACCTTTTTTACAGATAGGAAGAAATAGGAAG
TCAATGACTGGGACTAAATTCTTTACTTAGCGGTtaaagagaaaaacaat
catttttaGATCAGTAATTCTGcccatcttttctttttctattttactTA
TCTCTGAAGAAGGATAAGACGGGATTGATGAAATGAAACCAACTTATGCC
ATAGTTTCCTGTCCCCCTTAT

Coding sequence (CDS) from alignment at sc0001204:38701..41121

>TCONS_00034685 ID=TCONS_00034685|Name=TCONS_00034685|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at sc0001204:38701..41121 (Clytia hemisphaerica)
TCACTGCTTCATTCTTCTTTTTAGATTTTGTAAATTAGGTTTTCTTTTAC
CTTTGGAACCAGCTCGATCAAGAAATGATTTCAGCATTGATAATCTTACC
AAAGGTGCAATAGAAGGTCGGCCATGCGCGCATTGAAAGGGTAGCTGGCA
TTGTGACAACTCGTTTATTATTTTGATGCAAGTTTCATGCTCAAGTGGGT
CCCCAAATTTAATAGCACCATGGCAAGCGTAAGATGCTAAAACCTTAAAT
ATAACTGGTGACACTATACTACATTTACTGGCGCACGTTCTCATCATTTT
ACTTTGCTCAAGTATGTATTCTTTCAGGAGATTCACATTGATGGATGTAC
CTCTAGCTTTAGATTGCGGTTGACACACATTGACAAAGATGGATGGTACG
GAGGAGACCAGTACTCTATAAGAATGACTAAGATCTGTATTGGAGTGGTT
TTTGGTCTTCATAGTGGTGAAATAGATACCAGCTTTGTGGAACTCTGTGC
TGAAATGAAGAAGCTGGTCAATATTGCTATCAGTGAAAAACATTTCAGCG
GGTGGAGAGAGTGAACATATTTGCGATTTCAAATTCTGTCGACATGTCTC
TGGTTCATAATATCCAATTTGTTTTAGAAGTTTTTCTAATCGAACTCTCT
CGTGTGCTGCATGCTGGTCCATCAaaacaagaattttttcacCAGCCTCA
GCATCATCTGGCAATAAACACGCTATAAATCTATTGTCAACTTGACCTAT
CACTTTAGCACCAAGCAGCATTTCTTTATTGAATCGAAAAGAGCTGTATA
TTCtgtcaaaattatttcttgATAAGACTTTGGTCGAAGTTGCACTTGGA
AGTCTCTGGTCTGATGTACCGAGAATTGGGTTCTCCCAATCAATTTTAGA
TGAATTTACAGGAGCTGTAGTTCCTGGTCTATATTTGATTAATTTGTTTT
GGCTAATGTCAGCAGAGTTGTTAACTGAATCAAAATGTTTGATGTGTTCT
ATACAATTGACATTGCTAAGGGTTTTCGATTTTCTAAAAACAGACCATGT
AGATTCTGTTTCTTTTACTGATAAATCAGATCTGGTGGAGGTGTCATTGT
GCAAGCTTTGTCTTTTTATAAAAGACTGCATTAAAGTGTCATGTATTGAA
ATCTTGGAAGTTTGGGGAGTCTTGTCTGCAGAGTCTGGTTGATGGGTCCG
ATAAGCTTTTTGTGAGCAGGTTGATGGTAAAATGGTTGAGTGGTTAACAT
TaacaaattttccaattttgctaTTGAAACAACTATTTGGTGTAGAAGTC
TTTCGTTTTATGGATGTATCTGATGAGGGTGTAGAATGTGATGGATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020149XLOC_020149Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034685-proteinTCONS_00034685-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034685-exon-sc0001204-1491911889:38701..41121TCONS_00034685-exon-sc0001204-1491911889:38701..41121Clytia hemisphaericaexon
TCONS_00034685-exon-sc0001204-1510915933:38701..41121TCONS_00034685-exon-sc0001204-1510915933:38701..41121Clytia hemisphaericaexon
TCONS_00034685-exon-sc0001204-1575043694:38701..41121TCONS_00034685-exon-sc0001204-1575043694:38701..41121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001204supercontigsc0001204:38701..41121 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.0764	14.7332	77.3975	93.488	22.3429	17.1088	26.7652	28.0109	21.4762	23.4712	20.8318	15.7021	14.6243	11.7312	13.0326	13.468	25.7179	26.1996	9.47956	13.7198	21.555	23.1454	15.337	18.1735	22.5756	25.189	19.6172	14.5988	35.6926	37.018
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014790MutL_C
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
Blast
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BLAST of TCONS_00034685 vs. Swiss-Prot (Human)
Match: MLH3 (DNA mismatch repair protein Mlh3 OS=Homo sapiens GN=MLH3 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 3.493e-42
Identity = 107/303 (35.31%), Postives = 161/303 (53.14%), Query Frame = 3 
Query: 1083 DWENPILGTSDQRLPSATSTKVLSRN-NFDRIYSSFRFNKEMLLGAKVIGQVDNRFIACLL----PDDAEAGEKILVLMDQHAAHERVRLEKLLKQIGYYEPETCRQNLKSQICS--LSPPAEMFFTDSNIDQLLHFSTEFHKAGIYFTTMKTKNHSNTDLSHSYRVLVSSVPSIFVNVCQPQSKARGTSINVNLLKEYILEQSKMMRTCASKCSIVSPVIFKVLASYACHGAIKFGDPLEHETCIKIINELSQCQLPFQCAHGRPSIAPLVRLSMLKSFLDRAGSKGKRKPNLQNLKRRMKQ 1970
            +W+NP+     +     +S +  S       I   +RF K M+   +V+ QVDN+FIACL+     ++ EAG  +LVL+DQHAAHER+RLE+L+  I  YE +  + + + ++ S  L PP E+  T+     L  +       G+ F           D S S  VLV  VP  FV     + +   +++  ++++E+I EQ ++++T       +   + KVLAS ACHGAIKF D L  +   ++I  LS CQLPFQCAHGRPS+ PL  +  L+        + + KPNL  L R+M Q
Sbjct: 1144 EWDNPVFARYPEVAVDVSSGQAESLAVKIHNILYPYRFTKGMIHSMQVLQQVDNKFIACLMSTKTEENGEAGGNLLVLVDQHAAHERIRLEQLI--IDSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCYHKNLEDLGLEFVF--------PDTSDSL-VLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLELLQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGRPSMLPLADIDHLE-------QEKQIKPNLTKL-RKMAQ 1427
The following BLAST results are available for this feature:
BLAST of TCONS_00034685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MLH33.493e-4235.31DNA mismatch repair protein Mlh3 OS=Homo sapiens G... [more]
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