TCONS_00034685-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00034685-protein
Unique NameTCONS_00034685-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00034685-protein ID=TCONS_00034685-protein|Name=TCONS_00034685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=449bp
MNPSHSTPSSDTSIKRKTSTPNSCFNSKIGKFVNVNHSTILPSTCSQKAY
RTHQPDSADKTPQTSKISIHDTLMQSFIKRQSLHNDTSTRSDLSVKETES
TWSVFRKSKTLSNVNCIEHIKHFDSVNNSADISQNKLIKYRPGTTAPVNS
SKIDWENPILGTSDQRLPSATSTKVLSRNNFDRIYSSFRFNKEMLLGAKV
IGQVDNRFIACLLPDDAEAGEKILVLMDQHAAHERVRLEKLLKQIGYYEP
ETCRQNLKSQICSLSPPAEMFFTDSNIDQLLHFSTEFHKAGIYFTTMKTK
NHSNTDLSHSYRVLVSSVPSIFVNVCQPQSKARGTSINVNLLKEYILEQS
KMMRTCASKCSIVSPVIFKVLASYACHGAIKFGDPLEHETCIKIINELSQ
CQLPFQCAHGRPSIAPLVRLSMLKSFLDRAGSKGKRKPNLQNLKRRMKQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_020149XLOC_020149Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00034685TCONS_00034685Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014790MutL_C
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 437..449
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..65
NoneNo IPR availableSUPERFAMILY118116DNA mismatch repair protein MutLcoord: 199..417
IPR014790MutL, C-terminal, dimerisationSMARTSM00853MutL_C_2coord: 200..386
e-value: 9.2E-19
score: 78.3
IPR014790MutL, C-terminal, dimerisationPFAMPF08676MutL_Ccoord: 199..386
e-value: 1.1E-9
score: 38.1

Blast
[Close]
BLAST of TCONS_00034685-protein vs. Swiss-Prot (Human)
Match: MLH3 (DNA mismatch repair protein Mlh3 OS=Homo sapiens GN=MLH3 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.541e-44
Identity = 107/303 (35.31%), Postives = 161/303 (53.14%), Query Frame = 0 
Query:  154 DWENPILGTSDQRLPSATSTKVLSRN-NFDRIYSSFRFNKEMLLGAKVIGQVDNRFIACLL----PDDAEAGEKILVLMDQHAAHERVRLEKLLKQIGYYEPETCRQNLKSQICS--LSPPAEMFFTDSNIDQLLHFSTEFHKAGIYFTTMKTKNHSNTDLSHSYRVLVSSVPSIFVNVCQPQSKARGTSINVNLLKEYILEQSKMMRTCASKCSIVSPVIFKVLASYACHGAIKFGDPLEHETCIKIINELSQCQLPFQCAHGRPSIAPLVRLSMLKSFLDRAGSKGKRKPNLQNLKRRMKQ 449
            +W+NP+     +     +S +  S       I   +RF K M+   +V+ QVDN+FIACL+     ++ EAG  +LVL+DQHAAHER+RLE+L+  I  YE +  + + + ++ S  L PP E+  T+     L  +       G+ F           D S S  VLV  VP  FV     + +   +++  ++++E+I EQ ++++T       +   + KVLAS ACHGAIKF D L  +   ++I  LS CQLPFQCAHGRPS+ PL  +  L+        + + KPNL  L R+M Q
Sbjct: 1144 EWDNPVFARYPEVAVDVSSGQAESLAVKIHNILYPYRFTKGMIHSMQVLQQVDNKFIACLMSTKTEENGEAGGNLLVLVDQHAAHERIRLEQLI--IDSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCYHKNLEDLGLEFVF--------PDTSDSL-VLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLELLQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGRPSMLPLADIDHLE-------QEKQIKPNLTKL-RKMAQ 1427
The following BLAST results are available for this feature:
BLAST of TCONS_00034685-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MLH31.541e-4435.31DNA mismatch repair protein Mlh3 OS=Homo sapiens G... [more]
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