TCONS_00036514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036514
Unique NameTCONS_00036514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036514 ID=TCONS_00036514|Name=TCONS_00036514|organism=Clytia hemisphaerica|type=transcript|length=714bp
TCTAACTTTAAATTCTTGTAGGAACTAACTGTCTGTCCTGAAGAAATTTC
CCATATTATTTTCCTTCTATTTTAGAATCATTGGATGTCTTGAATAATGC
CCAGATTAAAAAGTATTATGACCATCAAACAGTCACTCCGTTCCCTGTCC
GTGATGCTCATGAAATTTGGCAACAGTGCCAAACGTTAACAAAACAAGAA
CTCGACATCTTTATCGAGCACAGATGGGAACTTTTAAAGTTGTTTGTAAG
GGGTAGATGCGATTCTTTTCGCTGGAAAGCCTTTTATGGCTATGGAGATG
AAACAACATTTCTAAAGGATAAACACGGAACCGTGCACTCAGAAAAATTG
TCAAATAAAGGTGTTTTGGGGGAGCTCTCGTCTACCTTGGTTATTAAAGA
ATTGTTGAAGCCAGACGTCTACAAGAACCTCCTTTAAACTTTACGAGCGT
CAGTGCCCAACGTTGAATCTCTTCGATCATCTAACTTTATAACTTGTGTG
CTGGCTCCATATGCCGTAAAGGTTTTCCTGATAGATGCCTCGAAAAAATC
TCCAGACCAGATTCAGTATTTCATGGAATTTTGGAATGAAATAAAGCTAA
AACCTATAAAAGAAGAAGTGGTTTCAAAAAAGCGAGACACAACAGGAAAA
CGCAAATTCGCGTCGAAATACAATAGACTGCCTAAAGATAAGAATGGTCA
TCTTTCCCTGACTG
Run BLAST on NCBI

transcript from alignment at sc0001476:9865..12356-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036514 ID=TCONS_00036514|Name=TCONS_00036514|organism=Clytia hemisphaerica|type=transcript|length=2492bp|location=Sequence derived from alignment at sc0001476:9865..12356- (Clytia hemisphaerica)
TCTAACTTTAAATTCTTGTAGGAACTAACTGTCTGTCCTGAAGAAATTTC
CCATATTATTTTCCTTCTATTTTAGAATCATTGGATGTCTTGAATAATGC
CCAGATTAAAAAGTATTATGACCATCAAACAGGTATGAAACAGCGTTTCC
ACAAATGAAGTACACTAAAATGAAGTACACTAGTATATCCAATTATTATC
CAAAGATAGAAAGTCTAATTCAAAGTAACTTACTTCACTACAATCTAATC
ATGTATTTTATTGTTACAGCACAAAGTTAATATTTTTCGTTTACTAATTT
AAGTGTCATTACTCTTGATTTAGTCACTCCGTTCCCTGTCCGTGATGCTC
ATGAAATTTGGCAACAGTGCCAAACGTTAACAAAACAAGAACTCGACATC
TTTATCGAGCACAGATGGGAACTTTTAAAGTTGTTTGTAAGGGGTAGATG
CGATTCTTTTCGCTGGAAAGCCTTTTATGGCTATGGAGATGAAACAACAT
TTCTAAAGGTAAATAGACGGCCTTTCCGAGTAGATTTAAGATTCAAAAAG
ATACCCTTTACCTCAGGGTTTAACTGATTTGCATTTCGAAAATCTTGATA
ATTGAGCTTGCATGAAGGCTGCCAAATAGAGTGGATCATTTAATACCTAC
TACTTAAATTTTCAATAATGCAAAAATCAATTCAGATTGCCAATTTAAAT
TCTAAAATTGTTTAACCTTATGAGGGTCAACCATTTATTTATTAGCTATG
TCAAAATGAAATTAACTTTTTAAATTGAACTTTTAATGCTTTTTAGGATA
AACACGGAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTG
TAAGGGGTAGATGCGATTCTTTTCGCTGGAAAGCCTTTTATGGCTATGGA
GATGAAACAACATTTCTAAAGGTAAATAGACGGCCTTTCCAAGTAGATTT
AAGATTCAAAAAGATACCCTTTACCTCAGGGTTTAACTGATTTGCATTTC
GAAAATCTTGATAATTGAGCTTGCATGAAGGCTGCCAAATAGAGTGGATC
ATTTAATACCTACTACTTAAATTTTCAATAATGCAAAAATCAATTCAGAT
TGCCAATTTAAATTCTAAAATTGTTTAACCTTATGAGGGTCAACCATTTA
TTTATTAGCTATGTCAAAATGAAATTAACTTTTTAAATTGAACTTTTAAT
GCTTTTTAGGATAAACACGGAACCGTGCACTCAGAAAAATTGTCAAATAA
AGGTGTTTTGGGGGAGCTCTCGTCTACCTTGGTTATTAAAGGTTAGCATT
TCCATGTTTTCCCATTTTTAGTTGTGATTATAAAAATAGTTATTTAAAGC
TGCATTTGTGACAGGGTTGTATTGTTCTAATCAAGTTAGGGAAAATGTCT
TTAAGTTTACTGAAACATCCATGAACAAAGGACTTTTGCTTTTACACTAT
AGAATTGTTGAAGCCAGACGTCTACAAGAACCTCCTTTAAACTTTACGAG
CGTCAGTGCCCAACGTTGAATCTCTTCGATCATCTAACTTTATAACTTGT
GTGCTGGCTCCATATGCCGTAAAGGTTTTCCTGATAGATGCCTCGAAAAA
ATCTCCAGACCAGATTCAGTATTTCATGGAATTTTGGAATGAAATAAAGC
TAAGTAAGTGTAGAATACTATCATTAACTTTGAAATCATGGTCAAGTCCA
TTGTTTACAAATTCTTTCAAATTAAAAATTTCAAAATTGTATTAATGCAG
ACAAAATATCAATCAGGGTTTCCATTTGATTTTTACAGAACCTATAAAAG
AAGAAGTGGTTTCAAAAAAGCGAGACACAACAGGTAAAGACAGTGATATA
AATAACCTACAAGTGAGGTTATCTATCGATATAAGCGTCCTTTAAAAGTC
ATTAAAATGTCTTTATTCCAGCTTGGTATTTGTCTTTTTCAGAAAACTAG
ATTTCGAAAAGTCAACCCTATTATTGTTAGTTGAACACATTTTATGAAAT
TCTTTCGAAAATCAGTAGCTTATCCTTGGAGTAATCACGGTATAAGTATA
TTTGTGTTTATTACTTCATTTAGGAAAACGCAAATTCGCGTCGAAATACA
ATAGACTGCCTAAAGATAAGAATGGTCATCTTTCCCTGACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021531XLOC_021531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036514-exon-sc0001476-1575043694:12225..12356TCONS_00036514-exon-sc0001476-1575043694:12225..12356Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1575043694:11849..12033TCONS_00036514-exon-sc0001476-1575043694:11849..12033Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1575043694:10716..10797TCONS_00036514-exon-sc0001476-1575043694:10716..10797Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1575043694:10354..10554TCONS_00036514-exon-sc0001476-1575043694:10354..10554Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1575043694:10174..10218TCONS_00036514-exon-sc0001476-1575043694:10174..10218Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1575043694:9865..9933TCONS_00036514-exon-sc0001476-1575043694:9865..9933Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1510915933:12225..12356TCONS_00036514-exon-sc0001476-1510915933:12225..12356Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1510915933:11849..12033TCONS_00036514-exon-sc0001476-1510915933:11849..12033Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1510915933:10716..10797TCONS_00036514-exon-sc0001476-1510915933:10716..10797Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1510915933:10354..10554TCONS_00036514-exon-sc0001476-1510915933:10354..10554Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1510915933:10174..10218TCONS_00036514-exon-sc0001476-1510915933:10174..10218Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1510915933:9865..9933TCONS_00036514-exon-sc0001476-1510915933:9865..9933Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1491911889:12225..12356TCONS_00036514-exon-sc0001476-1491911889:12225..12356Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1491911889:11849..12033TCONS_00036514-exon-sc0001476-1491911889:11849..12033Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1491911889:10716..10797TCONS_00036514-exon-sc0001476-1491911889:10716..10797Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1491911889:10354..10554TCONS_00036514-exon-sc0001476-1491911889:10354..10554Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1491911889:10174..10218TCONS_00036514-exon-sc0001476-1491911889:10174..10218Clytia hemisphaericaexon
TCONS_00036514-exon-sc0001476-1491911889:9865..9933TCONS_00036514-exon-sc0001476-1491911889:9865..9933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001476supercontigsc0001476:9865..12356 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.30189	2.15388	1.42656	0.368467	2.66312	0.587222	2.91477	2.79287	5.85611	4.72593	8.32373	6.84451	5.07113	5.14049	4.24317	4.9221	5.39661	6.23316	2.81814	5.61916	4.4503	5.33608	2.49512	5.26906	2.12627	2.6318	2.85904	1.73271	2.51415	1.75692
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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