TCONS_00034394 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034394
Unique NameTCONS_00034394
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034394 ID=TCONS_00034394|Name=TCONS_00034394|organism=Clytia hemisphaerica|type=transcript|length=1454bp
ctttaccgtagaaatcttgttaaattgtgaaaaaactgcgtaaacttccc
aaacgggaagttCCAACCCAATCGggttttccttattttcaactttttcc
cgcttcttcccGATCTGGAAGTCCGTTTTTAAACTCTTGCCCATTCTTCC
TGAACGGGAAGCCTTGAAGCCTCGCATGTTTTTAATTCCACCACGCTGCC
TGCTGCTCAACCAccagattttgaattttgattgaaacTAAGCAATGGAT
TGCAACAACTTTGAAGAAGAAGAACCAAACATGGAAGAAACACAAAATCA
AACTCAACAAGTTATGGAAATCACACCAGAACAAATGGGTCTCTTATACC
AATTGGTGCAACAAGACCCTCGGTTTCAATCACATGAAAACGTTACCCTT
TTGCAACCTCTCATCCCTCAGCAGCAACCTAACAAAAATTCCAGTAATAT
GTCTTATGGAGAAACATCAGAAGATTATTCAGCTAATACTAGTAGTAACC
TATCAGTCTTGGCAGATGCCTCACGCTTATTCCAAGAACCTCTTGCAAGT
CAGCCATCAACAGATACTATAAAGATTATTACTGTTAAACAATTAGGAAA
TGGAACCTGAATGAACCCAATACCCTGTATATTCATTATCCCAATATCCC
AACCCGAAGACCCAAACACCCGAAGACATGGTACTGTAACCCTGATTTCC
TGTTACCCCTCCGAATCATCACAAGGGACCCATCAGGATTCAATACGAAG
CTGAACCTAAAAGGCGTGGCACTGCATACGCGAAGCGGTCAGCAACCTTG
AAGCAAAAAGCGCATGAGCTCAATGTGATTACTGGCGCAAAAGTGAGATT
ATTGATCAATAGTAATGATTCCAATGATGAGAAGAGTTACGGGATGCCCG
TAACTGCTGTCATGGGGACTCAAACagaattttcttcttcaattgcTTCA
GTTCCACAAAGTATTTTTGGGACACCATCAGCCCACCCCTTATTGACAAG
GAAGGATAAGGAGACAACCCCAACTGCTACCGTCGTAGAAGAAAAATGTT
GGTTTTCccagaaagttaaaaatttacCTGGAATAAAACGTAAACGTTTA
GATTTGGAGAAAGAAGGACAACCTGAGTCAAAAAGGAACACGTTGAAATG
TTTGATATGCAACGCTCTTCCAAAATCGGAAAAAGACAAGCAACTTAGGA
AAGACCATGGTGTGAAAGCTCGAGTTCTTACTTGTGGTTTTAAGGATTGT
GGTAAAAGGGTGCATGGTGTTTGTGCTGGAATTGAGGTCAAGGCCAAAGT
GAAATTGCCCTATTACTTGTGCCCAGAACACAAGTCTTCAAGTAATGAAT
TGACACTGATATTTAAAGAGAAGGTTTCTTTATATACAAGACTTTTTTAT
ATACTAGACTTTTTTATATACAAGActacaaagtttttcaaattttgatt
tatg
Run BLAST on NCBI

transcript from alignment at sc0001159:81635..85659+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034394 ID=TCONS_00034394|Name=TCONS_00034394|organism=Clytia hemisphaerica|type=transcript|length=4025bp|location=Sequence derived from alignment at sc0001159:81635..85659+ (Clytia hemisphaerica)
ctttaccgtagaaatcttgttaaattgtgaaaaaactgcgtaaacttccc
aaacgggaagttCCAACCCAATCGggttttccttattttcaactttttcc
cgcttcttcccGATCTGGAAGTCCGTTTTTAAACTCTTGCCCATTCTTCC
TGAACGGGAAGCCTTGAAGCCTCGCATGTTTTTAATTCCACCACGCTGCC
TGCTGCTCAACCAccagattttgaattttgattgaaacTAAGCAATGGAT
TGCAACAACTTTGAAGAAGAAGAACCAAACATGGAAGAAACACAAAATCA
AAGTATGTATCTTCTATCGAGTCTGTTATTTTTGTCTACTCCACTGCTGT
TTTGGAGGCAATGCTTTACATTTTCCCTCCCTTCATGCAAGCTTatctat
gtttttattttatcaagtCCAAGTGGGACTAGTCTAAAATTCTACTATAT
GTATCTAGTCGAAAAATTTGAAGCTAATCAAAACAATCAGTTTTTTGATT
TACTCAAATTCATCGAAGTACGAAGTCTAATCAGTTTGAGATCTGAAAAA
GATTGGAAAATTTTATTAGTAATTCGATTAATTAGATTGAGCtttgattg
cttcgattactGTTTGATTACAGTTTAATGACTACTCTTTGCATATGCTT
TCCAAGCTTAAAgttatcgaactaatcgaacaatGAAGAAAAGAGAGGCT
GCAAactgttttttaattttattttcaaaattttgtaagCAACACATGCA
TACTTTTTGAACACAATGGTTGTGAGCAGCTAGCAAGTTTAATCGATAGC
TAAAATTAATATTAACCGTTTGATTAGACATCGATTGGAATCAATAATCA
ATACCGtgataccgtgaagtcgggtaacttgcatcagtggaggtaactcc
agttgagatacaaatatatcatttccctcttgccagtaagagggtttttg
gttcaaatgacCATCTAATCCTAAGGTTTCCGTCCATATTGACATAACCT
AGTTGCAACACTGAATAATTGAGCTATCAATTAAAATAGTTGATACAATC
AATACCAATAGGTAATCAATACTTTaatcaatattcaaaattttttttac
cttgattagctatcgattattGACTCTAATCGATATCTAATTGATTGATT
AATATTGATTAGCTCTCTAATAAAACTGATGATTGATTTTATCGATTCTA
AAGGTACATAAGCCTGGGTTTACAAACTTGAAATTAAGATCAGACTGTAA
ACAcagatttttatcaaaatcaatgATATATTACAGCCTGGCAGTCTCAT
AATCTTGCTCTTTCCACAATTTCATTTGATATCCTTGCTTGATGGAGGAG
AACCTACAACAGATTCAAGCTGAGCTCTATTTATATTGACCCTCATCACC
CATAGACTAAAAGTAGTTTAAAGTCATAAAAGTTAATTACTCCTCTGTGT
ACTCCCAAGTTGGGGAATTTCAAATCATTCTTGATCAATTACATTTATGA
TAATCTAAGCAGAAACAAGTTAGGTAAGGAAGCTTGAATCTTGAACGAGC
AAGATAAAGAGACTgcctggatacccaggctaactggaaatttaaattta
ttgcTGTTTTATTTTAAGCTCAACAAGTTATGGAAATCACACCAGAACAA
ATGGGTCTCTTATACCAATTGGTGCAACAAGACCCTCGGTTTCAATCACA
TGAAAACGTTACCCTTTTGCAACCTCTCATCCCTCAGCAGCAACCTAACA
AAAATTCCAGTAATATGTCTTATGGAGAAACATCAGAAGATTATTCAGCT
AATACTAGTAGTAACCTATCAGTCTTGGCAGATGCCTCACGCTTATTCCA
AGAACCTCTTGCAAGTCAGCCATCAACAGATACTATAAAGGTGAGCTCTT
AAGTGTATCAGGTCAACAGCTTCGTCTCATTTTACTTGATGTTGATGCTT
TTTTAATTTAAACAGTAAGcagcatttcaacttttctgtCAGTTGACAGA
AATTTGTTTACTTGAATTTCTAACAAGGGTTTCTCTTATTTTAGCAATTT
TGAGTAGTGGAATTTGTTATATAATTCTTTTATTAACCAGGTTAGACCAT
GTTGTACtgggtaaatgttttttctagaTTGCTCAAAGGAAGCAACTGCA
AGGGAGCACTGCATAATGATATATTAAACTATTGCATTTCTCAGTATTTT
AAAAACTGACTTTAAATCCTCATTGTTTATTGTAAAAAACTCAAATATGT
TCTTGTATAATTCAAAGATAAATTTGCATACATTACTATGTACCACTTAT
TTTTCAGATTATTACTGTTAAACAATTAGGAAATGGAACCTGAATGAACC
CAATACCCTGTATATTCATTATCCCAATATCCCAACCCGAAGACCCAAAC
ACCCGAAGACATGGTACTGTAACCCTGATTTCCTGTTGTATGTATTTTAT
GTCCAAATCCTGGTTATCATatatttctgaaaagaaaaatgtaGTTTTAG
GGGAAATCAAAGgagaaaataatataatttagGGTCATCTTATCTTCTTa
cattctttttgaaaacaggtcaaataaattttaagcaaataaatGGGTAA
TTCAAACTACATTTTGGGAAATTTGTATTATGTATTTATAGCAATTGCCT
CATCTTTGCTGTAATTCAAAGagctttttttgagaaatcatGAATAGAGC
TAATGCATGCAATGTTTAGCTGACCATGTGCTCTTACtggtcatattttt
ttattgattcaTTGCATTGTCTTTATTCTAGACCCCTCCGAATCATCACA
AGGGACCCATCAGGATTCAATACGAAGCTGAACCTAAAAGGCGTGGCACT
GCATACGCGAAGCGGTCAGCAACCTTGAAGCAAAAAGTAAGAGGTCCACT
CGTTTTAGTTTGGAGATTGTTGTTTCAAAGCAGATATCCCTAAAGGGACT
CGCATTTGAATTTTTGGCACTTGATAACTCGGTGATATATTActcagttt
ttgttttttatttcacatACTCGCTAATTGTACTTCTAGAAACCCCAGAT
AATGGCAAATAAAGGCTAAATCAGGATATTTAGCGTAAAATAAGGGACAT
AGTTTGCAAAAATAGGAAGAAGTAAGATTTATTGGAACCAAAACTTTTCG
GTCATGTTGACATTCATTACCANCAGATTATGGCAAATAAAGGCTAAATC
AGGATATTTAGTGTAAAATAAGGGACATAGTTTGCAAAAATAGGAAGAAG
TAAGATTTATTGGAACCAAAACTTTTTGGTCATGTTGACATTCATTACCA
CCCCCCCCcagttttttttggcaaatcttAGTTACAAGATACAACCTTCC
ACTTTtcattctttctgatttttgttcTAGGCGCATGAGCTCAATGTGAT
TACTGGCGCAAAAGTGAGATTATTGATCAATAGTAATGATTCCAATGATG
AGAAGAGTTACGGGATGCCCGTAACTGCTGTCATGGGGACTCAAACagaa
ttttcttcttcaattgcTTCAGTTCCACAAAGTATTTTTGGGACACCATC
AGCCCACCCCTTATTGACAAGGAAGGATAAGGAGACAACCCCAACTGCTA
CCGTCGTAGAAGAAAAATGTTGGTTTTCccagaaagttaaaaatttacCT
GGAATAAAACGTAAACGTTTAGATTTGGAGAAAGAAGGACAACCTGAGTC
AAAAAGGAACACGTTGAAATGTTTGATATGCAACGCTCTTCCAAAATCGG
AAAAAGACAAGCAACTTAGGAAAGACCATGGTGTGAAAGCTCGAGTTCTT
ACTTGTGGTTTTAAGGATTGTGGTAAAAGGGTGCATGGTGTTTGTGCTGG
AATTGAGGTCAAGGCCAAAGTGAAATTGCCCTATTACTTGTGCCCAGAAC
ACAAGTCTTCAAGTAATGAATTGACACTGATATTTAAAGAGAAGGTTTCT
TTATATACAAGACTTTTTTATATACTAGACTTTTTTATATACAAGActac
aaagtttttcaaattttgatttatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_019938XLOC_019938Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034394-exon-sc0001159-1491911889:81635..81936TCONS_00034394-exon-sc0001159-1491911889:81635..81936Clytia hemisphaericaexon
TCONS_00034394-exon-sc0001159-1510915933:81635..81936TCONS_00034394-exon-sc0001159-1510915933:81635..81936Clytia hemisphaericaexon
TCONS_00034394-exon-sc0001159-1575043694:81635..81936TCONS_00034394-exon-sc0001159-1575043694:81635..81936Clytia hemisphaericaexon
TCONS_00034394-exon-sc0001159-1491911889:83253..83524TCONS_00034394-exon-sc0001159-1491911889:83253..83524Clytia hemisphaericaexon
TCONS_00034394-exon-sc0001159-1510915933:83253..83524TCONS_00034394-exon-sc0001159-1510915933:83253..83524Clytia hemisphaericaexon
TCONS_00034394-exon-sc0001159-1575043694:83253..83524TCONS_00034394-exon-sc0001159-1575043694:83253..83524Clytia hemisphaericaexon
TCONS_00034394-exon-sc0001159-1491911889:83942..84071TCONS_00034394-exon-sc0001159-1491911889:83942..84071Clytia hemisphaericaexon
TCONS_00034394-exon-sc0001159-1510915933:83942..84071TCONS_00034394-exon-sc0001159-1510915933:83942..84071Clytia hemisphaericaexon
TCONS_00034394-exon-sc0001159-1575043694:83942..84071TCONS_00034394-exon-sc0001159-1575043694:83942..84071Clytia hemisphaericaexon
TCONS_00034394-exon-sc0001159-1491911889:84416..84520TCONS_00034394-exon-sc0001159-1491911889:84416..84520Clytia hemisphaericaexon
TCONS_00034394-exon-sc0001159-1510915933:84416..84520TCONS_00034394-exon-sc0001159-1510915933:84416..84520Clytia hemisphaericaexon
TCONS_00034394-exon-sc0001159-1575043694:84416..84520TCONS_00034394-exon-sc0001159-1575043694:84416..84520Clytia hemisphaericaexon
TCONS_00034394-exon-sc0001159-1491911889:85015..85659TCONS_00034394-exon-sc0001159-1491911889:85015..85659Clytia hemisphaericaexon
TCONS_00034394-exon-sc0001159-1510915933:85015..85659TCONS_00034394-exon-sc0001159-1510915933:85015..85659Clytia hemisphaericaexon
TCONS_00034394-exon-sc0001159-1575043694:85015..85659TCONS_00034394-exon-sc0001159-1575043694:85015..85659Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001159supercontigsc0001159:81635..85659 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.18579	0	5.82832	4.51839	2.69999	3.89675	3.73468	4.61567	4.61155	3.4312	2.9226	3.4975	1.67879	2.31619	6.01136	0	0	0	4.28774	2.09141	3.05067	1.13781	0	0.947709	0	0	0	5.45982e-10
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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