|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035278 ID=TCONS_00035278|Name=TCONS_00035278|organism=Clytia hemisphaerica|type=transcript|length=607bp
AAACATGTCAAATCAACAAAATTGTGAACAGAAAGGAAAAACTCAAACTT
TTTGAACAGATAGACACACACCTTCCACAACTTTGCTCAGAGCTTTCTTG
ACAGCGAATCTATCAATTTTCTGAACTTGAGGGAAGCAGAATCAAAGGAG
gttTGGACCGAGTTCCACAAATATTCATGCTGAGAAGTTCACTCAATCAT
TGACAGAAGCCACATCAAATGCATCAAAATACTGCGattcaCACGAGGCC
TTGTATCAAAAGAGGgtatcagaaaaagtttagCATCGTCATCGCGGTGA
TTTGGTACGCGACCCGGAAGAGGTACAGCATTTGCGAGCTCAAAGTTCTC
GATAAAATTGACGGCCATTTCTCTTGACAAGGAGTTCCGTATATTGTACA
TGGAATACTATCACCTGTTTTGGATTTTTGACGCACATAAACAAGTTGGT
AAACGATCGAAAATGCAAATTCAAAGTTATCGCGCCTTGGTTCCACTGGT
TACAACAAATCACTCTCAAAGGATTGTTAAAAAGAActagaatttttatt
tgaaataaatttaactGTTGAGTTTGAAGCTCCAAGATCCGGAAAGTTCA
ATAATTC Run BLAST on NCBI transcript from alignment at sc0001282:46530..53234+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035278 ID=TCONS_00035278|Name=TCONS_00035278|organism=Clytia hemisphaerica|type=transcript|length=6705bp|location=Sequence derived from alignment at sc0001282:46530..53234+ (Clytia hemisphaerica)
AAACATGTCAAATCAACAAAATTGTGAACAGAAAGGAAAAACTCAAACTT
TTTGAACAGATAGACACACACCTTCCACAACTTTGCTCAGAGCTTTCTTG
ACAGCGAATCTATCAATTTTCTGAACTTGAGGGAAGCAGAATCAAAGGAG
GTATGTAGCTTGACTTGGACCTCCACACAGGAAAATTTGTAATCTTCCCC
TTACTGCATTTTTTTATGTGATTGGGTGGGCTTAGACAGCTTAACAATGA
GATAATTTTATGAAAGTATAGATTTTTTGGTGCTTGAATATATACTGTAA
ATACAAAACATTAAGCAATTTTTCAGGTCTTGATTATACAACTGGAGCTT
TTTGCTCCCTTAGAAAAGAGTGGAATATCcggcaaaagtacatggatttt
taccgtaccgaccaccactggaaaagagaaattatttctgaggctaagaa
aaaattcaaaaatacatGTCGTCCGACTGAAATGGCCCAATATCAGTGCA
AATGTTTTTTCAGGCCTTAAATAGTTTTATTTTGAGGATATCATAATGGt
acaatgggccattccagaaaatttttgtcaccCCTATTGGATGACGTACA
TCTTTTTTGAAATCATAGTACTTACTATTTGGGCCAttcaagaaaatttt
tgttaccccccgtcggACACGTgcatttttaaatcttttctaGCCTTgga
aatgatttttcttttccagtggtggtcggaaattctgataaaaatccatg
taattttgcaaaatgcatcggaaattccactcttttttgccttttttaat
tcaaatgccttggaaattcatacattttcttcacTCACTTtggaaatttc
taattttggtgaaaacttttgcccttggaaatcctgtgtcgtccgccccc
tgttacagacaaattctggatgTTCTTTTCAGGCATGTCAGCCTCAAATT
CTTTTAGACGAGCAAGATATTTTGATTGTTCATTTCCATTCAAATATACA
CTGACAATACAGTTGAAGCTCTCAAACTCAATGTTTTACTTTTCTATAAT
AATCTTTAAGTTTCCCTTCATGAATTAAATTCAAATCACTTTCAAACTTA
TGAAATTCACAAAATTAAATTAGCCTTGCACAGTTTTTCCAGCTTTGTCT
CCTGAAATCTTGAAAACCCTTAAAAATATGTAGTCCAAGTAAAGAAGGCA
TTATCTCGTGAAAGTAAGTTAACAAATATTCTTCCATTCTGAAATACTGT
AACACATTCTTGGGAAATTAATGACAATTATAAATCTCAGATTTCTGTAT
CTTGGTTGAAATTCTATTAGTAGGGGGGgatgttattttgcaaaaatggc
ataaattcttagcccatttgtcaaaagttgcctttgggtataaaaagaag
aaaaaattatgttaaaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTCTTGG
GAAATTAATGACAATTATAAATCTCAGATTTCTGTATCTTGGTTGAAATT
CTATTAGTTTTCAAGCagaaactttaaaaattataaacctaaaatatctt
tgatttcaaaaatgataagTCGTAAAATCTATGGaaggaatatttttgaa
aaaacattgcaAAACAAGTCTTAtaacaaaatgagaaaaaaataataatt
acacattttttatataaggaacacgcttataaggaactcgaggctgaata
aggaattgttaagaaTTCTCAGgttgagaataagaaaacaaggaatccaa
tttttgcgaatccaaacttagcagctttGTAAATAAGGAACAACTCGATA
AGGaattttgaggctgaaattctccgtaaaaataaggaactccaggctca
gagcaaagttaaggttcctcataaaaaaacgtgtagcttagTATGATAAT
TTGCTTAATCATATCCAATCGTAAAGTGTGAAATAATATTTCAACTGTTT
TCTCAAAATTCTATCAACAGTGTGCTTCATATTTTGAACAATACAAATTA
AATACCTTTAAGCCTTCAGGGGACTcgttttttgtgtgtttttaagCTTA
GcaacaaatcaaaaatgaacTAAACTATTACAAGAAAATATAGTGGACCC
ATTATTTTGACCGCTGGGCCCAAGCGGAACCGTAGAAATCGGATCGAAAG
ATAAAAAACCACTGACAAAATCTAAAAGACACTAGTAGGTTTTAATGACA
AGAAGAAGGTAAGATTTCAGTCTTAAacatttacacgcttttttataaga
ataccttTAGTGAGAATATCAAATTAAACATGACCCAATTTAACAGATTT
GAATAACAAGGTTTTGAATTAAACTTTAGAGCAGAAATATAATGTTAGCT
CCTAATGTGTACTCGACAGTCCCAAACTCAAattatttctcatgtttgta
taaaagtcatcttaaaaaaataagaatacgCTAAGATTTTCGCACtaaat
tttgccaatttctaaGAATACTTAACCCTCATCCAAattacactattctt
ataaaaaagcgttgtAAATTCAAAAACCgtattttccaaatatttgtcaA
AACTTAGTCAAGGAAACAAGATTTTATTCCAGTATGAAGACTAACTTAAA
TTAATGCCAAATCTTAATTTCTGTTTtagttaaaattgaaaaaaataaac
tgaaataaaGACTGATGTTTTTTCATCTGTTTTCTATAAGCCTTCAACTT
GGCACCAACCTCTTTTTCAACAACGATCTCATGTCTTTGTGAAGCCCAAA
CTGATGCAAAACaatatcaaaaatgattttaatcttCTGTTCGTTAAACT
TTTTATACCCCTGGACCCCGTCAATGTTTGATGTCATAACCACGCcatgt
tcaaagtctttgattaTTGACTTTTTACCCATTTCAATGGCTGCTTTGAA
CTTATAGTCACTAATACTACACATTTGGTTTTGGGTGATCATTTGAGATG
GGTGGTGGTAAGGCGGTTGGATGTTGTGGTAGTTTGATTGAGGCGGTTGG
ATGTTGTGGTTGTTGGATTGAGGCAGTTGGAGGTTGTGGTTGTTGGATTG
AGGCAGTTGGAGGTTGTGGTTGTTGGATAGAGGCGGTTGGAGGTTGTGGT
TGTTGGATTGAGACAGTTGGAGGTTGTGATTGTTGGATTGAGACGGTTGG
AGGTTGTGGTTTTTGGATTGAGACAGTTGGAGGTTGTGATTGTTGGATTG
AGACGGTTGGAGGTTGTGGTTGTTGGATTGAGACGGTTGGAGGTTGTGGT
TTTTGGATTGAGACAGTTGGAGGTTGTGATTGTTGGATTGAGACGGTTGG
AGGTTGTGGTTGTTGGATTGAGACAGTTGGAGGTTGTGATTGTTGGATTG
AGACAGTTGGAGGTTGTGATTGTTGGATTGAGACAGTTGGAGGTTGTGGT
TGTTGGATTGAGGCAGTTCGATGTTGTGGTTGACGGATTGTTGGCGCTGA
GGTGGTTGGTCGTCCTTTGTCTCCAGTTCTGGAATGTCAAAGAATGCCTC
AGGGTCTTCCACAATATCGAGATAGGTACGATTGTTACCTGCTGCCACAA
ACGCATCCATGTCATTGTTAGTAGCTACTAAATTTTCCAGCCTACTTAAA
CGATCATTCATTTATCGCATTTCTGTGCGCACAAATTTGTCCAGATTgtc
aattttattaaaaagaacgctcaaatttttttgactaattggtgtcgaaa
ttaaattgaaatcaaTAGAACCTGCACTTGAAGCAATGTGTTGTGGCAAT
TTCTGCTCTGGTGTTTTCAAAGCTTCATAATGATTGAAGCTGAAGCATTG
TCAGATGGCTCTTTGAGAGATGGAGATGGCTTCTTTATGAGAGATGGAGA
TGGTTTTTTTATGACAGATGGCATTggagatgatttttttatgacagATG
ACATTGgagatgatttttttggttcaggaGATGGCTTTGGAGATGATTTC
TCCACCAAAAACGAATTGTAGCTTTTCATCCTCTCGTTCTGTTTATCATT
GAATTTCTGGATGACAGCTTGCTCCTCAGGGCCGATTTCTCGAggttaaa
aaaaaggttttattttgtttggaaTTTTATCTGATAATTATAAATTAATt
acttaaaagaagaaaatttggccgaaaaaaaattgggggatTTTGCCAAA
ATCCACCCAATAAAGTTCccgacaaaattaattttttccttcGTCCGTCA
AATTATAttctgccaaatttaatttattttgcgCGTTCCCTAAATTCGTG
CTTTTTCAAGCccaaaaacaggtttttttgcttatttaataacacTTTTG
GCGTAAAATATTCAGCTATGCGCCAAATCAAATTCCcgtccaaaatttct
tcctttaaggtataagaaaataaagttcAGTCTGTTAAAAGCCTAGTGTT
TGATAGGAATGAGAAGGGAGCATTAAGGTGACTATTATGAACAtagaaac
aaattttttgaaattattttttcaggttTGGACCGAGTTCCACAAATATT
CATGCTGAGAAGTTCACTCAATCATTGACAGAAGCCACATCAAATGCATC
AAAATACTGCGGTTagaatttttattattattattacttcCTCTGGTCCA
CTTTTTTCAAAGGATTCTTTGCTTTGGCTGAGCGTTGTTTTTGAGCAGGC
GTTTGCTTTGATAGCTTTTTTGCTTTCGGCTTGGTTTCTTGCTTTTTCGG
CTTAGTTTCTTGCTTTTTCGGCTTGGTTTCTTGCTTTTTCGGCTTGGGTT
CTTGCTTTTTGCATTTTGTCGTCTTGGCTTCCTGTATAGTAAAAACATTG
TAACTAATATAAAGTACACGCTGAGACAAGGAAGTATTTTTAGGAAGTCT
TCACAATGAAAAAAGACTACACCACGTGGTAAGCTCTTCAAACTGACCAA
AAATTGTATTGGATAAAACAGGGGAGGGGTacagaggcagggtactaacc
cataggtactaacttgattttttactaaaattttgattagcaccacccac
ccatatttagtaccaggtactacttcatttttgctgttaAAATATGGACA
CCactcttaaaatcttaaattttaccgATTAGATTGTTAGTTTTTCAGAC
TGAAAATTGACAGATAATTCAAGCAAACTATCAATGATGGAGTCNgctct
tcaaactgagcaaaaattGTATTGGATAAAACAGGGGAGGGGTacagagg
cagggtactaacccataggtactaacttgattttttactaTAATTTTGAT
TAGcaccacccacccatatttagtaccaggtactacttcatttttgccGT
TAAAATATGGACACCactcttaaaatcttaaattttaccgATTAGATTGT
TAGTTTTTCAGACTGAAAATTCAAGCAAACTCAATCAATGATGGAGTCCA
TCAATCAATGATGGAGTCAgaagcttttgtcctttgattttcatcacaca
TACAAagttttttgccattttctctGCACCCACTAATGCTATGTTAAAAA
GATGGAAAGATTTCCCAAGGATAATAATTTAAAGGATATAAgattgtttt
aaattttgaacaTGACATAAGAAGTTTTAGGGGCCTTGTCATGGCCTACT
AACGCAGttaatgatttaaaaaattatgttttagattcaCACGAGGCCTT
GTATCAAAAGAGGgtatcagaaaaagtttagCATCGTCATCGCGGTGATT
TGGTACGCGACCCGGAAGAGGTACAGCATTTGCGAGCTCAAAGTTCTCGA
TAAAATTGACGGCCATTTCTCTTGACAAGGAGTTCCGTATATTGTACATG
GAATACTATCACCTGTTTTGGATTTTTGACGCACATAAACAAGTTGGTAA
ACGATCGAAAATGCAAATTCAAAGTTATCGCGCCTTGGTTCCACTGGTTA
CAACAAATCACTCTCAAAGGATTGTTAAAAAGAActagaatttttatttg
aaataaatttaactGTTGAGTTTGAAGCTCCAAGATCCGGAAAGTTCAAT
AATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035278-exon-sc0001282-1491911889:46530..46679 | TCONS_00035278-exon-sc0001282-1491911889:46530..46679 | Clytia hemisphaerica | exon |
| TCONS_00035278-exon-sc0001282-1510915933:46530..46679 | TCONS_00035278-exon-sc0001282-1510915933:46530..46679 | Clytia hemisphaerica | exon |
| TCONS_00035278-exon-sc0001282-1575043694:46530..46679 | TCONS_00035278-exon-sc0001282-1575043694:46530..46679 | Clytia hemisphaerica | exon |
| TCONS_00035278-exon-sc0001282-1491911889:51705..51790 | TCONS_00035278-exon-sc0001282-1491911889:51705..51790 | Clytia hemisphaerica | exon |
| TCONS_00035278-exon-sc0001282-1510915933:51705..51790 | TCONS_00035278-exon-sc0001282-1510915933:51705..51790 | Clytia hemisphaerica | exon |
| TCONS_00035278-exon-sc0001282-1575043694:51705..51790 | TCONS_00035278-exon-sc0001282-1575043694:51705..51790 | Clytia hemisphaerica | exon |
| TCONS_00035278-exon-sc0001282-1491911889:52864..53234 | TCONS_00035278-exon-sc0001282-1491911889:52864..53234 | Clytia hemisphaerica | exon |
| TCONS_00035278-exon-sc0001282-1510915933:52864..53234 | TCONS_00035278-exon-sc0001282-1510915933:52864..53234 | Clytia hemisphaerica | exon |
| TCONS_00035278-exon-sc0001282-1575043694:52864..53234 | TCONS_00035278-exon-sc0001282-1575043694:52864..53234 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001282 | supercontig | sc0001282:46530..53234 + |
Blast
The following BLAST results are available for this feature:
|
