TCONS_00033099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00033099
Unique NameTCONS_00033099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length867

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00033099 ID=TCONS_00033099|Name=TCONS_00033099|organism=Clytia hemisphaerica|type=transcript|length=867bp
GATTACaataaattttttcatattttattttatgtaaCCTATGAAATATA
CctttcaagaaaaatgaaattaaatgaaattcaCTGATGTTGATGTGTGC
TGCATAAATGGCTGAGAACACGTCTGGACAGCAGACACCTCCTAAAAGGC
CTCCTGCTCCAAATCTAAACTACCAACCTGAAACACCACCATTATCAGTC
AAACACCATCTAGAACATTTGAAAGCACTACCTGCATCTAAAGTACGCTG
GTTTTTCCAAGAAGACAAGAAATGGATACCATTCAATGGCGCTGACTCTT
TGAAAATAGAAGATGTTTTTAGGTGTCTTCCCCACGAGTTGCAATCACCT
CTCTGTATACCGTCTAATGTTGATCCTGAATCAATAAGCTTCCCAACAGT
GAAAGGTTCACTTTATGAAATAGACATCCTTGGACGAGAATGCAGACCAA
TATATTGGAAGGagAATGCAGTTCCAATAATGAGAGGGACTTGGTTCAAA
GGTGCCATGTCAGGGAATTGGGAACCCTTGTCAGAAAAAGAATCACATCT
CATAGAAGAAGCTCATATTCAAGTGGTTCGCTCTTTGgGTCTGGGAAGTC
CACTTGTATCTCAAACTGCTTCACCTGCTCACAGTAATTTcagtcaaaat
gaatttttcagtcGGACATGACTGATGACCGATACCCATTTTCAGCCCTG
GGTTTATGGCAGCCCTAGGTTTTATGGCAGCCTCTTGATTTTCTTTGGGA
AGTTGAAAATATCTCATTCTGGCAGATTTTAGGAGAGATACCATTTTCCT
TGGTATAAAGACACTTTTTTTTGCTATGTGAAAGCCATTGGAGTAAGGGA
CCTGATGTAGTCCTGCA
Run BLAST on NCBI

transcript from alignment at sc0001021:40735..43803-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00033099 ID=TCONS_00033099|Name=TCONS_00033099|organism=Clytia hemisphaerica|type=transcript|length=3069bp|location=Sequence derived from alignment at sc0001021:40735..43803- (Clytia hemisphaerica)
GATTACAATAAATTTTTTCATATTTTATTTTATGTAACCTATGAAATATA
CCTTTCAAGAAAAATGAAATTAAATGAAATTCACTGATGTTGATGTGTGC
TGCATAAATGGCTGAGAACACGTCTGGACAGCAGACACCTCCTAAAAGGC
CTCCTGCTCCAAATCTAAACTACCAACCTGAAACACCACCATTATCAGTC
AAACACCATCTAGAACATTTGAAAGCACTACCTGCATCTAAAGTACGCTG
GTTTTTCCAAGAAGACAAGAAATGGATACCATTCAATGGCGCTGACTCTT
TGAAAATAGAAGATGTTTTTAGGTAATTTCCTTAAATGGATAAAATTGTT
TTTCATTTTAAAACCTTCTTTTCCTTTGGCACTTCCTTTTGACTAATAGT
TTTTTCTGCTCATACAAAATAGTTGGATAACCAAAACCATTTCTACCCAT
TTTCTAGGTGTCTTCCCCACGAGTTGCAATCACCTCTCTGTATACCGTCT
AATGTTGATCCTGAATCAATAAGCTTCCCAACAGTGAAAGGTTCACTTTA
TGAAATAGACATCCTTGGACGAGAATGCAGACCAATATATTGGAAGGGTA
AGCTGATAAAGAGCTATTTTTTGTTGTATTTAGCCCAAGCTACTCAATTT
TGAGGTCAGATTTTTTATTTATTTTGACACTTAATTCAGCTCAACATAGC
ATTCTCAAAAAATTTCAGAAACATTTATAAATTCATGATATGTACCACTG
CAATGTCTTCTGACATTACATCATGGACCATACAGTTGATTGGTTTTAAG
CTTACAAATCATGTAATCAAATTGGTCTGTCCTGATAAAATCGTGAACCG
TGTGCATATTTTACTTCCTGAAAAGGAATTGTATAGCTTTTCTTACGCTT
ATTATTGAAGATAGTCTTTTCTTTGGAGAGTCATGTGATGCACTTTTCAA
ATGAAAGATTTGATCATCTTTAGAGGAAACAGAGAATAATGGTTATATTC
AAAAAAAAGTTTTGTTTGTTGAACACACAATATTAATCTTCATAGAGTTC
AACTGTAGCCTTTGGTGAAAATGGTTTCACCCTCTACTTTTTTAACCGGA
TAAATTTTTGCGGGGACTTAATTTCGCAGGTGGCACTATTGGGTGGCAAT
ATTTTCACGATTTTGTGACTTATACTGTCAAATCATGCATTTTGGTTGTT
GAAATGCGCTTCTTTGATGCCAGTAACCATTCAAAAAGTATTTGTTTGAC
ATATTTTGAGTTTTGTTTAGAAATGTTTCGCGGTTGAGGCCCTTCCAAAT
TTCCATTGGGACTTAATTTTGATGATTTTCACGGATGACACCTAAATCCG
CGAAATCCACGAAATTTAATCCCCGCGAAAGTTTATCCCATTAAAGTAAT
ATCCTGCTGTGACAAAGAATCAATGCAGAATATCGATGAAAGTCATTGGT
AATTTCATCCTAATTTCATATTTTTAGAGAATGCAGTTCCAATAATGAGA
GGGACTTGGTTCAAAGGTGCCATGTCAGGGAATTGGGAACCCTTGTCAGA
AAAAGAATCACATCTCATAGAAGAAGCTCATATTCAAGTGGTTCGCTCTT
TGGTAGGGACTTTTTATAACATTACTATTATTGGTTTAAAAATTTGATTT
CATTATTAAGAAACATTAGTACGGTCTAATTGTGTAAAAATTACACGTGC
ACAAAGGCGTACAAGCATGAGACTTTGCACATTTTTTAAAAATGTGTAAC
ATGACATATACTTTGGAGAAAAAAAATTCATTTTAGCCTGGGAACCTGTT
CTGGTCTGTAAAATACACAAACAGGTGCCAATTTTTTGGGTCTGAGATTT
AAATCCATTTTTGACCTCTAAACTACAATTGTGCAAAATCTCATGCTTAT
ACGCCTTTGTGCACAATGTTAATGACTTTTGGCACATTTACACTGCACTA
TATCATAGCCTGAATTTAAAGGTCTGATTTTTTTTAAGGAAAATCGTCCT
CGTTTTAATGCAATTTTGTATTCAGGTAGTTTCATTTCTACAGGAAAGTT
ACTTTGAAAGAAATAATTTTGAATATATTTTTTATATTTATTTCAATCAG
GGTCTGGGAAGTCCACTTGTATCTCAAACTGCTTCACCTGCTCACAGTAA
TTGTAAGTCAATTAATGTTTCATCTTTGCTAATTATCATCTCTTTGTAGG
TATTGTTAAAGAAGTTTTGCATTGATTTTCTATCAATTTCCTTAACCTGC
AAAAGTATTAGGGGGCATCCAGGTAAATTTCGTAAACATAATAGAAAAAA
AAACAGCAGTATTACTTCTCGTCGGATGTGTTTTCTCTTCATTAAAATTT
CCATAAACACCATTTAGAAGAATACATAAGTCCTTATTAGCTCCTTAAAG
TTAGGAAGAAAGCAAGTCGATAAAAATTGATCTTAGAAGCACTGTTGAAA
CTTCTGGAGAAAGTGTTGATAAAAAAAGGGAACTTAGGCACACCCTTGAA
AGTCACGAAGAAAGCGAACCAATAAAATTGATCTTAGAAACACTCTTGAA
AGTTATAATGTAAGCGAGTTGATAAAAGTGATCTTTGAAACACCCTTTGG
AATTTACGAAGAAAGCCAGTCAATATAAAAGTGATCTTTGAAACACCCTT
TGGAATTTACGAAGAAAGCCAGTCAATATAAAAGTGATCTTTGAAAAATT
TTTGAAGTTACGAAGGATGCAAGTCACAAAGGAAGAGAGTAGTAAAAGAA
TGGGCTAAGAGACAGGGGCGTAAAAAGATTTCAAGTTAATGGTTTTATTC
TCTTTTCATTGGGACATCATGACCAACACAAAGATTTTCAGTCAGTCAAA
ATGAATTTTTCAGTCGGACATGACTGATGACCGATACCCATTTTCAGCCC
TGGGTTTATGGCAGCCCTAGGTTTTATGGCAGCCTCTTGATTTTCTTTGG
GAAGTTGAAAATATCTCATTCTGGCAGATTTTAGGAGAGATACCATTTTC
CTTGGTATAAAGACACTTTTTTTTGCTATGTGAAAGCCATTGGAGTAAGG
GACCTGATGTAGTCCTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_019166XLOC_019166Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00033099-exon-sc0001021-1575043694:43482..43803TCONS_00033099-exon-sc0001021-1575043694:43482..43803Clytia hemisphaericaexon
TCONS_00033099-exon-sc0001021-1575043694:43207..43346TCONS_00033099-exon-sc0001021-1575043694:43207..43346Clytia hemisphaericaexon
TCONS_00033099-exon-sc0001021-1575043694:42202..42326TCONS_00033099-exon-sc0001021-1575043694:42202..42326Clytia hemisphaericaexon
TCONS_00033099-exon-sc0001021-1575043694:41652..41703TCONS_00033099-exon-sc0001021-1575043694:41652..41703Clytia hemisphaericaexon
TCONS_00033099-exon-sc0001021-1575043694:40735..40962TCONS_00033099-exon-sc0001021-1575043694:40735..40962Clytia hemisphaericaexon
TCONS_00033099-exon-sc0001021-1510915933:43482..43803TCONS_00033099-exon-sc0001021-1510915933:43482..43803Clytia hemisphaericaexon
TCONS_00033099-exon-sc0001021-1510915933:43207..43346TCONS_00033099-exon-sc0001021-1510915933:43207..43346Clytia hemisphaericaexon
TCONS_00033099-exon-sc0001021-1510915933:42202..42326TCONS_00033099-exon-sc0001021-1510915933:42202..42326Clytia hemisphaericaexon
TCONS_00033099-exon-sc0001021-1510915933:41652..41703TCONS_00033099-exon-sc0001021-1510915933:41652..41703Clytia hemisphaericaexon
TCONS_00033099-exon-sc0001021-1510915933:40735..40962TCONS_00033099-exon-sc0001021-1510915933:40735..40962Clytia hemisphaericaexon
TCONS_00033099-exon-sc0001021-1491911889:43482..43803TCONS_00033099-exon-sc0001021-1491911889:43482..43803Clytia hemisphaericaexon
TCONS_00033099-exon-sc0001021-1491911889:43207..43346TCONS_00033099-exon-sc0001021-1491911889:43207..43346Clytia hemisphaericaexon
TCONS_00033099-exon-sc0001021-1491911889:42202..42326TCONS_00033099-exon-sc0001021-1491911889:42202..42326Clytia hemisphaericaexon
TCONS_00033099-exon-sc0001021-1491911889:41652..41703TCONS_00033099-exon-sc0001021-1491911889:41652..41703Clytia hemisphaericaexon
TCONS_00033099-exon-sc0001021-1491911889:40735..40962TCONS_00033099-exon-sc0001021-1491911889:40735..40962Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001021supercontigsc0001021:40735..43803 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.79193	5.96176	11.2343	10.4164	2.54381	1.70461	0.74771	1.37718	2.41805	3.0317	2.23404	0.951434	0.160189	0.828852	1.17337	1.01801	3.10139	4.6861	0.318847	1.92577	3.0557	2.4796	1.70724	2.445	0.84617	1.65353	2.82309	1.73186	1.12076	2.15659
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00033099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top