TCONS_00030618 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030618
Unique NameTCONS_00030618
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2121

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030618 ID=TCONS_00030618|Name=TCONS_00030618|organism=Clytia hemisphaerica|type=transcript|length=2121bp
CCCCCATGTTGAAAGCATATAAGATGAGATCAACACCCGTTGAGACCATG
TAAGATGATGTCaacataagaaaaaaaaataacacatATCATGTCATTGT
TCCACCCGTACGCCGGGTAAACTGTCAGTAATGACGTGCAAGACGTCAAG
CAACAAGGAGTGTCCCTCAGAAATGAAACAAAGCTAGCGAGTAAATCATG
AACGTTAACGTGTCNCCGTACGCCGGGTAAACTGTCAATAATGACGTGCA
AGACGTCAAGCAACAAGGAGTGTCCCTCAGAAATGAAACAAAGCTAGCGA
GTAAATCATGAACGTTAACGTGTCAGATCGCAAAGGATCGTTCGTAATAA
CAAACAAATATAACTCGCGTAAATAACCAAATCATCAATGTAGTTCAAGA
CCAGGTTCCACTCTCTGGTTCATATCTTGGGGGTGGTCTTGTTGTACGAC
GGGGACGAGACAATGCGACTGAATCCCCGTTGGGTGGAGTTACAGTTCTC
CTATCACCCTCGGTTTGAATGTTAGAGGGTGGTGAATCACTCACAATCGA
CGGTGAAGAATCTTGGTCACCCTCAATAAACGTGGAAAGTGGTACAGAAG
TCGTGGTTTCTGCCGTGATCGGGACAGGTACCTCGGAGGTTCTATGCAAT
GGTTGACGTAGTGGCGGGTTGTCAACTCTCATAGGTGTTGTGGGTCGAGC
GATGGTCGAAGTGATCGGTGTAAATTTGCGTAGAAATCGACGGTTTCGTA
GAGTGACACGACGGGAACCATCAACCTTGACAACGTATTGGTCGTGATCT
TTAACCTCGACGACGACACCCGATCTATCCCATTTTGTAGGATGGTTTCC
ATGCTGATTCTGGATCAGGACGTAGTCGCCAACGAGCAACGGTCGTAGTT
GGCGGGAAAATCGGTTCAAGCGTTCTGATGACCGTGAAAACCGAGTGAGC
ATCGCCTCTTCTTTCTTGTTCCAAGCGTCGCGCCATGTTGGACGGATGGA
GGGGTTGGTGTACATCGGGAGACGATTTACGAAGGAGAAAGCGTCACCTA
ACGGCTTATCAAAGATGATTTCGGCGGGGCTGATCTTGCAGTCAGTGTCG
GGTGTGTTCCTCATCTGAAAGAGAGCACGTAGGAAACGATCGTTGTCAAG
AGAACCGTTCGGGTCGATATTCTCCATGAGAAGACGTTTGCACTTCTTAA
CCGCTACCTCTGCGCGACCGTTGGACTGGGGAAAGTAAGCCGATGAAATA
CGGTGACTCACTCCCCACTTCTTCAAGAACAATTCATTTTCATGTGCGGA
GAATTCTGGGCCGCCATCACTCGATAGCTCCTCAGGTACACCGAATGTGG
CGAAAAGAGAGCGTAACGCAGTGATGAGTCCCTTGGCACCAGATTTATTG
CTACCGTGTAGCGAACGATAAACTTCAACCCATCCAGATAGTCGATCTCC
GGCGAGTAAATAGTGGGAACCAGCATAAGAGAAGAAGTCAGCGAATATCA
TCTCGAATGGAGTGGACGGTGTCGATGGTGGGGCTGCAGGCATGGCCACT
TGGGATGGAGCATTTCGATTGCATTGGGTACAGTTGGCACGTGTTGCATT
GATATCTTTTGACATACCGGGCCAGAAGACAGTGGATTGAGCTCTGGATG
ACATGGCAGATACTCCTTGGTGTGCTGAGTGAAGTATCGAAAGGACGGTT
TCGCGAAGAGATGGTGGAACAACAACCCGATCTTGATAAAGCAATACATC
ATCCATTATGTAGAGGGACTCACGATATCGCCAGTACTCGGATATTGTGG
CAATTTCATCAGGTTGGATTTCGCCGAAGCCAGACTGTATGTGCTTCAGC
AGGAGGGAAAGCGATGGATCTTTAGCTGTCTCAACAATGATCTGGTCCCA
GCTCATGTGGAAGGTAGCGTTGGTATCAGCACGAATGGCCGCATTAATGG
CATCTTCTACCTGGTCAGCAAAAGTCAATAATCCAATGACAGCCGATGGA
TAGCGTGACGTGGCGTCGGATGCGAGGTTCGTTTTCCCTGGTAGATGATA
AATCTTGAAGGACCATGGCAGTGTTCGCTGTTTCAGCCGAAAAATTCTAT
CGTTCGTAATCTCGTCGAGCG
Run BLAST on NCBI

transcript from alignment at sc0000832:135792..138169-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030618 ID=TCONS_00030618|Name=TCONS_00030618|organism=Clytia hemisphaerica|type=transcript|length=2378bp|location=Sequence derived from alignment at sc0000832:135792..138169- (Clytia hemisphaerica)
CCCCCATGTTGAAAGCATATAAGATGAGATCAACACCCGTTGAGACCATG
TAAGATGATGTCAACATAAGAAAAAAAAATAACACATATCATGTCATTGT
TCCACCCGTACGCCGGGTAAACTGTCAGTAATGACGTGCAAGACGTCAAG
CAACAAGGAGTGTCCCTCAGAAATGAAACAAAGCTAGCGAGTAAATCATG
AACGTTAACGTGTCNCCGTACGCCGGGTAAACTGTCAATAATGACGTGCA
AGACGTCAAGCAACAAGGAGTGTCCCTCAGAAATGAAACAAAGCTAGCGA
GTAAATCATGAACGTTAACGTGTCAGATCGCAAAGGATCGTTCGTAATAA
CAAACAAATATAACTCGCGTAAATAACCAAATCATCAATGTAGTTCAAGA
CCAGGTTCCACTCTCTGGTTCATATCTTGGGGGTGGTCTTGTTGTACGAC
GGGGACGAGACAATGCGACTGAATCCCCGTTGGGTGGAGTTACAGTTCTC
CTATCACCCTCGGTTTGAATGTTAGAGGGTGGTGAATCACTCACAATCGA
CGGTGAAGAATCTTGGTCACCCTCAATAAACGTGGAAAGTGGTACAGAAG
TCGTGGTTTCTGCCGTGATCGGGACAGGTACCTCGGAGGTTCTATGCAAT
GGTTGACGTAGTGGCGGGTTGTCAACTCTCATAGGTGTTGTGGGTCGAGN
TTGGTGATAAATCTTGGTCACCTTCAATAGACGTGGAAAGTGGTACGTCA
GAAGTTGTGGTTCCTGCCGTGATCGGGACAGGTACCTCGGAGGTTCGATG
CAATGGTTGACGTAATGGCGGGACGTCGACCCTCATAGGCGTTGTGGGTC
GAGCGATGGTCGAAGTGATCGNTGATCGGGACAGGTACCTCCGAGGTTCT
ATGCAATGGTTGACGTAGTGGCGGGTTGTCAACTCTCATAGGTGTTGTGG
GTCGAGCGATGGTCGAAGTGATCGGTGTAAATTTGCGTAGAAATCGACGG
TTTCGTAGAGTGACACGACGGGAACCATCAACCTTGACAACGTATTGGTC
GTGATCTTTAACCTCGACGACGACACCCGATCTATCCCATTTTGTAGGAT
GGTTTCCATGCTGATTCTGGATCAGGACGTAGTCGCCAACGAGCAACGGT
CGTAGTTGGCGGGAAAATCGGTTCAAGCGTTCTGATGACCGTGAAAACCG
AGTGAGCATCGCCTCTTCTTTCTTGTTCCAAGCGTCGCGCCATGTTGGAC
GGATGGAGGGGTTGGTGTACATCGGGAGACGATTTACGAAGGAGAAAGCG
TCACCTAACGGCTTATCAAAGATGATTTCGGCGGGGCTGATCTTGCAGTC
AGTGTCGGGTGTGTTCCTCATCTGAAAGAGAGCACGTAGGAAACGATCGT
TGTCAAGAGAACCGTTCGGGTCGATATTCTCCATGAGAAGACGTTTGCAC
TTCTTAACCGCTACCTCTGCGCGACCGTTGGACTGGGGAAAGTAAGCCGA
TGAAATACGGTGACTCACTCCCCACTTCTTCAAGAACAATTCATTTTCAT
GTGCGGAGAATTCTGGGCCGCCATCACTCGATAGCTCCTCAGGTACACCG
AATGTGGCGAAAAGAGAGCGTAACGCAGTGATGAGTCCCTTGGCACCAGA
TTTATTGCTACCGTGTAGCGAACGATAAACTTCAACCCATCCAGATAGTC
GATCTCCGGCGAGTAAATAGTGGGAACCAGCATAAGAGAAGAAGTCAGCG
AATATCATCTCGAATGGAGTGGACGGTGTCGATGGTGGGGCTGCAGGCAT
GGCCACTTGGGATGGAGCATTTCGATTGCATTGGGTACAGTTGGCACGTG
TTGCATTGATATCTTTTGACATACCGGGCCAGAAGACAGTGGATTGAGCT
CTGGATGACATGGCAGATACTCCTTGGTGTGCTGAGTGAAGTATCGAAAG
GACGGTTTCGCGAAGAGATGGTGGAACAACAACCCGATCTTGATAAAGCA
ATACATCATCCATTATGTAGAGGGACTCACGATATCGCCAGTACTCGGAT
ATTGTGGCAATTTCATCAGGTTGGATTTCGCCGAAGCCAGACTGTATGTG
CTTCAGCAGGAGGGAAAGCGATGGATCTTTAGCTGTCTCAACAATGATCT
GGTCCCAGCTCATGTGGAAGGTAGCGTTGGTATCAGCACGAATGGCCGCA
TTAATGGCATCTTCTACCTGGTCAGCAAAAGTCAATAATCCAATGACAGC
CGATGGATAGCGTGACGTGGCGTCGGATGCGAGGTTCGTTTTCCCTGGTA
GATGATAAATCTTGAAGGACCATGGCAGTGTTCGCTGTTTCAGCCGAAAA
ATTCTATCGTTCGTAATCTCGTCGAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017556XLOC_017556Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030618-exon-sc0000832-1575043694:137486..138169TCONS_00030618-exon-sc0000832-1575043694:137486..138169Clytia hemisphaericaexon
TCONS_00030618-exon-sc0000832-1575043694:135792..137228TCONS_00030618-exon-sc0000832-1575043694:135792..137228Clytia hemisphaericaexon
TCONS_00030618-exon-sc0000832-1510915933:137486..138169TCONS_00030618-exon-sc0000832-1510915933:137486..138169Clytia hemisphaericaexon
TCONS_00030618-exon-sc0000832-1510915933:135792..137228TCONS_00030618-exon-sc0000832-1510915933:135792..137228Clytia hemisphaericaexon
TCONS_00030618-exon-sc0000832-1491911889:137486..138169TCONS_00030618-exon-sc0000832-1491911889:137486..138169Clytia hemisphaericaexon
TCONS_00030618-exon-sc0000832-1491911889:135792..137228TCONS_00030618-exon-sc0000832-1491911889:135792..137228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000832supercontigsc0000832:135792..138169 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.483697	0	0	0	0	1.00009	0	1.1505	0.029015	0.64529	0	0.417413	2.64466	4.6437e-09	0	0	0	4.03745e-06	0	0.228372	0	0.657333	0.0290109	1.60261	0.127412	0.0898612	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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