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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030121 ID=TCONS_00030121|Name=TCONS_00030121|organism=Clytia hemisphaerica|type=transcript|length=6121bpRun BLAST on NCBI protein sequence of TCONS_00030121-protein >TCONS_00030121-protein ID=TCONS_00030121-protein|Name=TCONS_00030121-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1204bp ITWFVLLARSKINSTIKTPSEDLKIKADKDENLCHQKHGRCLVLQVIYHVRun BLAST on NCBI transcript from alignment at sc0000795:28711..50435- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00030121 ID=TCONS_00030121|Name=TCONS_00030121|organism=Clytia hemisphaerica|type=transcript|length=21725bp|location=Sequence derived from alignment at sc0000795:28711..50435- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000795:28711..50435- >TCONS_00030121 ID=TCONS_00030121|Name=TCONS_00030121|organism=Clytia hemisphaerica|type=CDS|length=65070bp|location=Sequence derived from alignment at sc0000795:28711..50435- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00030121 vs. Swiss-Prot (Human)
Match: FNIP2 (Folliculin-interacting protein 2 OS=Homo sapiens GN=FNIP2 PE=1 SV=2) HSP 1 Score: 244.973 bits (624), Expect = 1.122e-65 Identity = 162/438 (36.99%), Postives = 235/438 (53.65%), Query Frame = 1
Query: 439 KYQITKAKQDVKMLGEMIFGSVAMVYKGSILKVHLIRSPPQLLMTKVFALRSRSAGVNFCDSELSSCNSLSRPVD-VXXXXXXXXXXXXXXXXXXXXXEINRSFSTPVNMRNK-----KSSFLNPHNSISLLAAPXXXXXXXXXXXXXXXXXXXNGGSPHDSQAGSFRYRFSRSKKTSLDSPVWRSRT--------EQSEELRSVYKQQPKIGVGIIFNLWDNAEDNRAFQDFFFSHYTLFEAQLQAFRVKIEKSFY---------LRQKF-LDTAVEALEGFREDVLRLCYTPRIIEPVWLNLTSTVERKQKECASKFFNTFLEIYDMCENKETSYFLSNLMTAVLTHHLSWINTVISCEKNSKKCSLNKHASSTIDILARCHPYNPLWAQICDLYGCLGSPFKLARTVIVGKNIKLISKILQFLTYFIRCCEVQEN 1680
KYQ T+ DV MLGEM+FGSVAM YKGS LK+H IRSPPQL+++KVF+ R S FC S N+L + + P+L + + + T N + STPV+M ++ + S + S+S L + T S + S++ R+ RS+ TSL++ + R+ E++ ++ KI + IIF+L + E R FQDFFFSH+ LFE+ + + IEK+ LR +F + +EAL FR + L PRI EPVWL + S K + C +F F + + + F + L+TAVLT+HL+W+ TV+ + K K S ++++LA+ HPYNPLWAQ+ DLYG +GSP +L RTV+VGK L+ +IL LTYF+RC E+QEN
Sbjct: 125 KYQYTRPASDVNMLGEMMFGSVAMSYKGSTLKIHYIRSPPQLMISKVFSARMGS----FC----GSTNNLQDSFEYINQDPNLGKLNTNQNSLGPCRTGSNLAHSTPVDMPSRGQNEDRDSGIARSASLSSLLITPFPSPSSST-----------------SSSSSYQRRWLRSQTTSLENGIIPRRSTDETFSLAEETCSSNPAMVRRKKIAISIIFSLCEKEEAQRNFQDFFFSHFPLFESHMNRLKSAIEKAMISCRKIAESSLRVQFYVSRLMEALGEFRGTIWNLYSVPRIAEPVWLTMMSGTLEKNQLC-QRFLKEFTLLIEQINKNQ---FFAALLTAVLTYHLAWVPTVMPVDHPPIKAFSEKRTSQSVNMLAKTHPYNPLWAQLGDLYGAIGSPVRLTRTVVVGKQKDLVQRILYVLTYFLRCSELQEN 533 HSP 2 Score: 105.531 bits (262), Expect = 1.885e-22 Identity = 64/177 (36.16%), Postives = 105/177 (59.32%), Query Frame = 1
Query: 3067 FGKSMLAGYTENYLGDFVLQGCKSIDQAQ--LANDLLRTVKYSVLDEEINDAVCIVADTDNWTCEVRGMSKRIGQHNQNTSFEPYTTEVFASNIISSMVESIKELCSLNMPPNFCLLHVEEQLRDLFNKGKVFAEYSNSNDHDESAKKSFMRVFGYHSTDIELLNAVGGTLTVPVAQ 3591
FG+S+LAGY Y+ D VL G S ++ + L DL+ TV + VLDE I +AVCI+ADTD W+ +V +++ + + +V S+ +SS+++SI +L L++P +FC++H+E++L++++ K K+ +EY H K V G S D+ LL A+ T + VAQ
Sbjct: 943 FGRSLLAGYCPTYMPDLVLHGTGSDEKLKQCLVADLVHTVHHPVLDEPIAEAVCIIADTDKWSVQVATSQRKVTDNMK------LGQDVLVSSQVSSLLQSILQLYKLHLPADFCIMHLEDRLQEMYLKSKMLSEYLRG--HTRVHVKELGVVLGIESNDLPLLTAIASTHSPYVAQ 1111 The following BLAST results are available for this feature:
BLAST of TCONS_00030121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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