TCONS_00030120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030120
Unique NameTCONS_00030120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030120 ID=TCONS_00030120|Name=TCONS_00030120|organism=Clytia hemisphaerica|type=transcript|length=5505bp
GCGACAGTGAACTGTCATCGTGCAACAGTCTATCTCGACCTGTTGATGTT
GCTTCCACACCGTCACTTTCGAGCAGCTCAGCTTCAATGCCAGCAAGTCC
TACATCAGACACTGAAATCAACCgTTCATTTTCAACTCCTGTCAACATGA
GAAACAAGAAGTCGAGTTTCTTGAATCCTCACAATTCAATATCTTTATTG
GCTGCACCTAGTTGGAGTATGTCCGACCTCGATACATTGAGCTTGTCCTC
CAGTTTCTTATCACTGAATGGCGGTTCACCTCATGACTCACAAGCTGGGA
GTTTCAGATACCGTTTTTCACGTAGCAAGAAGACTAGCCTAGATTCTCCT
GTTTGGAGATCAAGGACAGAGCAGTCTGAGGAGttGCGAAGTGTTTACAA
ACAGCAACCAAAGATAGGTGTTGGAATCATCTTCAATCTTTGGGACAACG
CCGAAGATAACAGAGCTTTCCAGGATTTCTTCTTTTCACACTACACTCTG
TTTGAAGCGCAACTGCAAGCTTTTCGAGTCAAAATCGAAAAGTCTTTCTA
CTTGCGGCAGAAATTTCTTGATACAGCTGTGGAGGCATTGGAAGGTTTTC
GTGAAGATGTGTTGAGGTTGTGTTATACTCCAAGAATTATtGAGCCGGTT
TGGTTGAATCTTACCTCAACGGTTGAGAGGAAACAAAAAGAATGtgcatc
aaaatttttcaacacttttctGGAGATTTACGACatgtgtgaaaacaaag
aaacaagCTACTTTCTTTCGAACTTGATGACAGCAGTATTGACACATCAC
TTATCATGGATCAATACCGTCATTTCTTGCGAGAAGAACTCAAAAAAATG
CAGCCTTAATAAGCATGCTTCATCAACGATCGATATCTTGGCTAGATGTC
ATCCCTACAACCCACTATGGGCTCAAATATGtgATCTGTATGGCTGTCTT
GGATCACCGTTCAAACTGGCAAGAACTGTAATCGTTGGTAAAAACATTAA
GCTTATCAGCAAAATCTTACAATTCTTAACGTATTTCATCAGATGTTGTG
AGGTGCAAGAGAACTTTATTGGTGCTGAGAGACCAAAGGACTTTTTAAAT
CGCCAGAGTGGTTCTAATTGGAATGATTCACTAAGCTCATCATCAAGTGC
TCAAACCAACATTCAAAATTGGTTTGAACGTAGCTGCAGTATTATAACTT
CACAAAATGTTGACCCgtttaaagaatttaaaaattataatcATCTGGAC
GCGCTAGATGAACGAGATGAGATTCTAACACCAAGGACTAGCGACCGCAA
CATTATTGAACATCTGAAATCTATGAATTTAGATACGACTAAATGTTATT
GTGTGTTCTTACAAGCTTTAAACAAAGTTAGTGATTTACGATCGTACGTT
AATATGGAGGATATCAAAAAGAAAGAGTTAAATATTACCAACGACTCAGG
GAAACCTGGGCTGGTGGCTTCCAAATCATGTATGATATGTAGAACCCTTG
AAAAAGGAATGTTCGAACAATTTTGTGACAAGTGTAAACTGGACTTACAG
AAATCGAGTATAGAAGTTGTTAATACGGTGTGTTTACATTGTGTTAAAAG
ACTGGAAAACGTATcgaaatgtcaaaatttcattgaaaatagtaCGTGTT
CATGTGGCTCTGGCTCTACCAAAGACTGTATTTGCAATGGGAATATGAAG
CAGACCCAAGTTTGTCCGAAAAAACCAAGTTTCATTTGTTATTGCTGTGA
TCCGAGCACCTATGGTGACTTAGAATTAGACATAAAAGCTGATACAAGCT
GTGGTAGTTTAACCGATTTAGATTTAACACCCAGACCGAGGAAAAGTTCA
GATCCTATTGATGTTGTACCAATGAGTAAAACGAACTCTAAGTTTGGAAC
AATGAGGAGTAGCACTAATAGCCATGATAGTGGCACTGAACTTGAGCATA
GTGAAGGGTTTAATAGTTGTAGCGGAGATTCTGATTCATGTTTCACGCGA
GCGGATAGTATGAGCTCTCAAGGGGTCGATTCTGACTATTGTAGCGTCGA
AAGTGAACAATTAGCTTCTACGTTAATCGAAAACTCATTATTATTGATGT
CAAACAAAGACATTGGTCGGACGGAAATACCGGACAAGAATATCTGTCGG
ACAGAATTATCGGGCGACGTTTGCCGGACAGATGTGCCGGACACTGAACA
CTATCCTCATCCACCTGTCACTAAATCCTTATCAACGACGACATTGAAAA
GTTCATTAGCTTTAGATTTTGACGACACTACAGATACAAATACGGACACT
GATGTGAACACGATAGAGGAGCATTCACAAGATACATTAACATTAGATTT
AGACGAATTAAGACTGAAGGAACTTTCCTTGCCAAGAAGTAAACCGAAAT
CACATCGCAAGCACCAATCAACAAGATACAGTTGGAGTGATACACCTTCT
TTCGGTAAATCGATGTTGGCCGGTTACACTGAAAACTACCTCGGTGACTT
TGTGTTACAAGGATGCAAAAGTATCGACCAAGCACAACTTGCCAATGACC
TTCTGAGAACTGTCAAGTACTCAGTATTAGACGAGGAGATCAACGATGCC
GTTTGTATAGTTGCCGACACTGATAATTGGACGTGTGAAGTTCGCGGCAT
GTCCAAACGTATCGGACAACACAATCAAAACACCTCTTTTGAACCATACA
CCACTGAAGTCTTTGCATCCAACATCATCAGTAGTATGGTAGAATCAATC
AAAGAACTTTGTAGCCTCAATATGCCTCCCAACTTTTGTTTATTGCACGT
TGAAGAGCAACTTCGAGATTTATTCAACAAAGGCAAAGTGTTCGCAGAGT
ACAGCAACAGCAATGATCACGATGAGTCAGCTAAAAAAtcctttatgaga
gtttttgGTTATCACAGTACCGACATTGAGTTGTTGAATGCAGTTGGAGG
TACGTTGACCGTACCTGTGGCTCAAGACGAAACACTTTATGccgtttaaa
aatgtttttaaatcaaTTGGAATTTCGTGGTACGTTACCATTACGTTTTT
Acgtattacacgttttttttattagaacccagtttataagaacattgagg
ctgaaattcgtcgaaaaaataagaacatcgtaagaacatggccagtctca
gtttggaaaaaaatgacaagaaaatacaattttttcctcttttcaagcag
ttttaaccgaacttggggatggattttctaaaatcgagagtcaaatattg
tccaaattttataagtgctctttattttgcatgatattgtcgatttagag
taaaaaaagtctaaaaaattaagaacgtaACTAAGAACACTTCAAACTGA
AAACTGTTAAAAAactaagcacatccaggctcagccaaattttaggtgct
ctaaaaaaaaaacgtgtattcttttaaaatacacctttttgaccgtagtc
gcgcggtcagacgcgtgccactttattatttgattTACCACCCTAAATGT
TGTTCTAAAGCTTCACAACACAACCTTTTAGGCCTTGTATTTCCTTAGTT
TTACGCtcttacgctcgaaacgaagtaTCATATCTTACGTAGTCTAggtt
tttaagcaaaactttcACAAACACAGCTCGCAACTTCGCAACTTTTTTAA
GCAGTTGTTTATTATAATAACTGGTTTAGGTCTTTTAGGAAAATAacagc
ttttttttataaaacgacgcctatttttttaaatgacaaaattataaaat
ttcaaaaaataattgtcTCAATTTTTTAAACCTGTTGATTTTCGGGTGCA
AAATTCTATAAAAACTACATTGTACATTGATTACCCTGTACATAACATTT
CGCTTTGTAATAATCAAAATTtagaatattttcatttcaatatttttttc
gtcatttagtttgtttacttagttagtttatttttttgcttggttTGTAT
GTCTTAGAACTGTGTATAGACTTTTTGAGACTGTTCACTTAacgtttcca
gaccatctaaaaagaacgacaaataactattaaaaagtgagaaaaagaac
gacaaaccctaaccTTAACTATCAAAAAACAACATGTTGACTGCTACCCC
ATcatattcattactttttgcatTTTACGCTATTTAAGGACTAGCGgttt
aaagaacgataaattacgcacgcgtataagtctctatttgggtgagcagG
AAGcattagatgaactaactcTTTTGAGCGCGGTAAATGGTTGATCTGTT
ACGAAATTTCTCTAACATTTACTCTTAAGATCCCATTTAGAAAGTGGTGG
AGGGAATCTCAAAATTCTAGAATTTTAAATTCAGGAATAACATGTTATAA
TAGAAATGTCTTAAAATTCTTAGTTTATGtgttaaaatttaatttatttt
tttcgtcattttcttattttttctttaatacagtacgttttttgtttttc
aatttttgatttcgatagttaatttttttttgttttgatttaaaattttc
tatatTATACTAAATAATCCCAAAGCTATTTACAATGCGAGTGACCCCTT
AGGCTGCCAGTATCTCTCTGATTAGTTTTGTTATAACGTATCTTAATCGA
CTCAAAAACATCCGctaattttttgcaaaacaaGTTTTTCGATGGGAATT
GTTGACcttgttaaaattttgctgaaaaggATATTATGGTACAAAAGGTT
ATAAATTTGACTGTAGTTAGTCGTTTTTTCGTACTCTTAAATCGTCTAGA
TAGTCTAGATTCACATCCTTTATAACAAatattagggaggttaagtatcg
aagATAAATCAACGCGACGAACGAGACGGGTTTTGACCCGCAAtctgcag
taaacatgtggacCTGCATgacctgcattttctagaatccaggctaaagA
AGCTCAAGACCaaaaaaccatgaaaatcttcGTTGTTGAACAAGGTAGAT
ATAACATCTGCTTTGCTACCCTTACAATCTTGCAGAGAAAAGGCCCGTTC
GTCGCGTTGATTTATCTTcaatacttaacctccctattATATCAGAGATG
TCCGCAGTCCTGCAAGCCCCGGGCAAAAGGTTTTGTTTCACTTTTGAACG
GATTCATtatattcattacgtaatgaTTTCTGTGGAAACACCCCggtttt
aattttaaaacttttttctttagcttaAATTTGATAGTTATCTTTCAATC
CTTCGACGTCAGTCAAACTGTAATGAGATGAGGCTTCCcttttgccgggc
cgtgcgtGATTCTAGAACCTATTTATTTAAATTTACTCGTTTTGTGAGAT
TAGTGCAAAATACAACATTATATATTTgtcttttttaaacattgataGCC
AAACTGGCTCGAGAATATTGAAAAACACTTAGAAATTTAAAACTgaaatt
taaataattattGAGAATATaaactatttatttttttgaggaAATGAAAT
TGTATTTTGGTGTTTAGTGTTTTTTTCCCTTTTGTCCCTCTTCGTATTAA
CTTTC
Run BLAST on NCBI

transcript from alignment at sc0000795:28711..38762-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030120 ID=TCONS_00030120|Name=TCONS_00030120|organism=Clytia hemisphaerica|type=transcript|length=10052bp|location=Sequence derived from alignment at sc0000795:28711..38762- (Clytia hemisphaerica)
GCGACAGTGAACTGTCATCGTGCAACAGTCTATCTCGACCTGTTGATGTT
GCTTCCACACCGTCACTTTCGAGCAGCTCAGCTTCAATGCCAGCAAGTCC
TACATCAGACACTGAAATCAACCGTATGTTGTTCTCTTTATTTTTAAACC
AATTCAATTTTCTTTTCAATATACGAGCACATTGAACCTTCTGTTATTAA
ACAAAATTCTTATAAATTTTCCAATAAATTTTGGTTATCTCTTAAACTGA
CGTTTATAAATCTTGTTCCTTATCCACCAAACCCTACCAATTCTCAGAAT
ATCAGGCCTAACTTATAAAGAACAAACCTTATAAAATCTGTTTTGATTAA
GAATACAATAAGATAAACAACACACTCCAATCTTTTCACTTTTTTAGGTT
CATTTTCAACTCCTGTCAACATGAGAAACAAGAAGTCGAGTTTCTTGAAT
CCTCACAATTCAATATCTTTATTGGCTGCACCTAGTTGGAGTATGTCCGA
CCTCGATACATTGAGCTTGTCCTCCAGTTTCTTATCACTGAATGGCGGTT
CACCTCATGACTCACAAGCTGGGAGTTTCAGATACCGTTTTTCACGTAGC
AAGAAGACTAGCCTAGATTCTCCTGTTTGGAGATCAAGGACAGAGCAGTC
TGAGGAGGTAAGAGAAATTCATGATTTCCCCTATTTTGAATTTTTGTAAA
ATTAAAAGATTTTTTTTTAAGATTTGTCCTTTTTCACATAAAATAAATTA
AGATTATGACTGACACAGACTGACAATGTTTTTGAAAATCTTTAAACCAG
CAAATCAAGCATTTGAATTGCATAAAAAACTATTTGCTAAGCTCTTTAAA
GATGACCAACTTTCTGTCCTTCTTATTTGAATAAAAAGTGGGTGCAAAGC
TGGTAACTAAAGTCTTTGATTGGAAATGATTAAAAGAAGACATTGCATTA
ACGTCAAAAGAGAGCAATGCATTGTTAACTTTAGACAGCCAACCTTCTGC
CACTTCAATTTACAATGAGAATAGGCAAGGCGAAAATTGGACCCTCTAAA
CTAGAGCCTACTCTAAACATCTTTCTACTTACTTTTTATTTCAGTTGCGA
AGTGTTTACAAACAGCAACCAAAGATAGGTGTTGGAATCATCTTCAATCT
TTGGGACAACGCCGAAGATAACAGAGCTTTCCAGGATTTCTTCTTTTCAC
ACTACACTCTGTTTGAAGCGCAACTGCAAGCTTTTCGAGTCAAAATCGAA
AAGTCTTTCTACTTGCGGCAGAAATTTCTTGATACAGCTGTGGAGGCATT
GGAAGGTTTTCGTGAAGATGTGTTGAGGTTGTGTTATACTCCAAGAATTA
TTGTAAGTTTTCTTTTCATTTTGTTTTAAATGTAATCGAAAAAGGCTTTA
TGATGAAGTCAAGTATTGAGCAAGGTCATATTATTGTTAGTGAAGTCCTG
ACTTATTCCACTTGTTAGGATTATTTGATAGTTTAAGCTTCCAATTTCGT
TTTAATCAATTCCCAGTGTAGTTGTATATAAGTTTATAGCTAGTTGATTA
TTGGTACAGCAATTGTTTTATTATTTGTTTTCTTCTGAAGGAGCCGGTTT
GGTTGAATCTTACCTCAACGGTTGAGAGGAAACAAAAAGAATGTGCATCA
AAATTTTTCAACACTTTTCTGGAGATTTACGACATGTGTGAAAACAAAGA
AACAAGCTAGTAAGTAATAAACCTTAACATTCCAAGCTTTGGTTGCTTGA
CAAACAAATTTCAGCTGAAATTTTACCATATTAAGTAGATCAATTTTTGT
GAATCAGCCTCTTTACACCTAATTTCTTTCATTTTCCTAGCAAAGCTCAG
ATTCTTATATTTGTTTGCAAGGACTAGAATTTTTGAAAAGTGTCAAAATT
CAAGAATTAAGTGCCAAATTTCCAGGCACTACGGAAACTTTTCAAATCGT
GTACAGCGAATGAGGAAAATTAAGCTATTTTACCAATGAAGAGAGGAAAT
TCAAGGTTTTTTCAAGAGATCTGGTACCTGCCGTACCGGAAAAATCAAGA
AAATTGATTCATGCAAAATTTCATCCCTTTACCTAATAACCTTATTTAAT
GAAACTCAATTTATTTTTAATATTTCTCTTATTTCAGCTTTCTTTCGAAC
TTGATGACAGCAGTATTGACACATCACTTATCATGGATCAATACCGTCAT
TTCTTGCGAGAAGAACTCAAAAAAATGCAGCCTTAATAAGCATGCTTCAT
CAACGGTAAGTTTATCTTTCCCAACACTATTCAGTGTTTTCACAGATGAA
CGTTCCAGTACTCTTCAAATTTTCAAAATTTTAGGTGTGACGCCCTCTAG
AAGAAGGTACTTTCTCCAAATCTCAAGNTTCAAATTTTCAAAATTTTAGG
TGTGACGCCCTTTAGAAGAAGAATCTCAAATTATGCCTTAAAAAGTGGAT
AAAAACTTTGGTAGATATTATGTATCACCCTTCACAGTTTGTATTTCATA
TATACGAGAGTAGTTCTAAATGGAGTTACATAAATCCAAAATCATCAGTT
TGCTAAATTTTCTGTTTTTACTAAAAGAATATTCATTCTACTGCCATCCA
CAATTTTTTTTTATTTCATATTTTTTCTGTCCTTTTAGATCGATATCTTG
GCTAGATGTCATCCCTACAACCCACTATGGGCTCAAATATGGTAAGAAAG
TATAACCTTTTTATCTAACTTAGGAACCTGTTCTTTTCAACTTTAGTTAA
TGTTTAGCCGAGATCTAGCAGTCTCGTTGAACACTTGACCAAATGTCAGA
TTGGTTTATACCAAAATTTTATTTGGCTATACCAGACGAATGCGGCTTTT
ACCCCAGTCTTTATTCCTAGATTTTTTAACAAAAATTTTCTCAGCTATAA
CCGTGAAAAATCGATTTCATTATAAACTTTGAAGCTTTACAGTACGTTTT
ACGTTTTTTTTTTGTTAGTGATCTGTATGGCTGTCTTGGATCACCGTTCA
AACTGGCAAGAACTGTAATCGTTGGTAAAAACATTAAGCTTATCAGCAAA
ATCTTACAATTCTTAACGTATTTCATCAGATGTTGTGAGGTGCAAGAGAA
CTTTATTGGTGCTGAGAGACCAAAGGACTTTTTAAATCGCCAGAGTGGTT
CTAATTGGAATGATTCACTAAGCTCATCATCAAGTGCTCAAACCAACATT
CAAAATTGGTTTGAACGTAGCTGCAGTATTATAACTTCACAAAATGTTGA
CCCGTTTAAAGAATTTAAAAATTATAATCATCTGGACGCGCTAGATGAAC
GAGATGAGATTCTAACACCAAGGACTAGCGACCGCAACATTATTGAACAT
CTGAAATCTATGAATTTAGATACGACTAAATGTTATTGTGTGTTCTTACA
AGCTTTAAACAAAGTTAGTGATTTACGATCGTACGTTAATATGGAGGATA
TCAAAAAGAAAGAGTTAAATATTACCAACGACTCAGGGAAACCTGGGCTG
GTGGCTTCCAAATCATGTATGATATGTAGAACCCTTGAAAAAGGAATGTT
CGAACAATTTTGTGACAAGTGTAAACTGGACTTACAGAAATCGAGTATAG
AAGTTGTTAATACGGTGTGTTTACATTGTGTTAAAAGACTGGAAAACGTA
TCGAAATGTCAAAATTTCATTGAAAATAGTACGTGTTCATGTGGCTCTGG
CTCTACCAAAGACTGTATTTGCAATGGGAATATGAAGCAGACCCAAGTTT
GTCCGAAAAAACCAAGTTTCATTTGTTATTGCTGTGATCCGAGCACCTAT
GGTGACTTAGAATTAGACATAAAAGCTGATACAAGCTGTGGTAGTTTAAC
CGATTTAGATTTAACACCCAGACCGAGGAAAAGTTCAGATCCTATTGATG
TTGTACCAATGAGTAAAACGAACTCTAAGTTTGGAACAATGAGGAGTAGC
ACTAATAGCCATGATAGTGGCACTGAACTTGAGCATAGTGAAGGGTTTAA
TAGTTGTAGCGGAGATTCTGATTCATGTTTCACGCGAGCGGATAGTATGA
GCTCTCAAGGGGTCGATTCTGACTATTGTAGCGTCGAAAGTGAACAATTA
GCTTCTACGTTAATCGAAAACTCATTATTATTGATGTCAAACAAAGACAT
TGGTCGGACGGAAATACCGGACAAGAATATCTGTCGGACAGAATTATCGG
GCGACGTTTGCCGGACAGATGTGCCGGACACTGAACACTATCCTCATCCA
CCTGTCACTAAATCCTTATCAACGACGACATTGAAAAGTTCATTAGCTTT
AGATTTTGACGACACTACAGATACAAATACGGACACTGATGTGAACACGA
TAGAGGAGCATTCACAAGATACATTAACATTAGATTTAGACGAATTAAGA
CTGAAGGAACTTTCCTTGCCAAGAAGTAAACCGAAATCACATCGCAAGCA
CCAATCAACAAGGTTAGTACCCGAGGCAATTCCTTACCTCACATCTTAGT
CTCTATCTGTACTTCCCTCTCTTGAGTTTCAAAAGTTTTAAATATTATGG
TTCTACTTTACTTGCTTTGCCGCAAACCATTATGCAACCCTTTAAAGAAC
ATTAAATTTCCATACAGGGGGGGGGGGGGGGGGGAAATTTTTTAAAAAAA
AAATTTTCCCCCCCGGGGGGGGGGGGGGGTGGACGAATCTTTTGAAGTCA
AAAAATTCTTTGAAATGTGTGGATGCCTCCTGGAAAATGGGAAAATTTGC
AAAAAACCTTGGGAAAATTATCTTTATACCTTTAAAGTGACGAACTAAAA
TCAGTCTTTTACCCCCTGGAAATTTTGAGATAAATTTTTACCTCCTGGAA
AAGTGAAAAACACTCTTTTAAACCCCCCTGGAAATATTCCTCCATTCCAA
TGTATGGACAAAAATAGAATGTCCTATTATTCAATGTATCTACTGACATT
GCTTGCACAGCATTCTCATATGACAAAAACACTTTTTTTCTTCGTTTGAT
CACAAGATTTAAGAAAACTGTTGTTAATTTCTGTCGTCCGCATAAGATGT
GTCCATACTTTTTATATATCATCAAAAATAATGTTTTCAATATCTACTCT
ATCTTAGATACAGTTGGAGTGATACACCTTCTTTCGGTAAATCGATGTTG
GCCGGTTACACTGAAAACTACCTCGGTGACTTTGTGTTACAAGGATGCAA
AAGTATCGACCAAGCACAACTTGCCAATGACCTTCTGAGAACTGTCAAGG
TTTGTAAATCTTTCACCCAAATAGTAACTTCATTTTTGCTAGAGCAGTTT
TTCAGTCCAACTTACGAATTCTATAATTTTTCAGTCTCAGTCTCTCTTTC
CCTCACAAGCAGCATTAATAAGACACATATTTCATGTCAGGACCAGTGTC
TTGCTATTGTTATATTATGCTGATATATACAAAAAAAAATTTCTTTTCCT
TTTTCTGACCAATTTTGCCCCGCATCCGTGTCAATCCAATGTTAAAAACC
TTAAAAGTGATGAGTAAGCAAACGATATCACTCTTAATTGAAAACAAATT
ATCTTTAAACGCATGGATCAACGTGTAATTTATCATTTGCATTTTTCTTT
CCAACAGTACTCAGTATTAGACGAGGAGATCAACGATGCCGTTTGTATAG
TTGCCGACACTGATAATTGGACGTGTGAAGTTCGCGGCATGTCCAAACGT
ATCGGACAACACAATCAAAACACCTCTTTGTAAGTTTCTTCTTCGAGTTT
ATGCCCCGAAATTCAATCATTATGATTTTAAAAAAGTCAATCTTATCCAA
GAAGTATTTGTCCCTCTAAGCCATTTTTTCGTGTGACAAGTTTAACACCT
TTCCCGAATTGTTTGTTTTTTTTCGAAGGTCTTCAAACCATATTGAAAAC
TATATATTTGTATTCCTCCTATAAAGACAAGTGCATGCTGAAAATTTCAG
CTCAAAAGCTTTTTTCTATCAATTTTTATGAATGTTTTTGTTCAAGGTGA
AATCCCTTATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATT
TGTTTAGTTTTGCAACATACAATTTTATGAAACTAAATAGAAACATTCAA
ACATTAAAACAAAAAAGTCAAAAAGCCTAAATAACAATTCGGGAAAGGTG
TTCGCGAAAATTTATGTCGTAGATCTCGCGGGTTTTTTTGGCCTCGCGAA
ACCTTTTGCTCTTGAAATAACCTATATGAAGAATTTGGGGTAACTCTCTG
TACGGGAATTTTATACACGATATGCATCCCCATATCAAAATCTGTCTTGA
GGATGCGCGCAACCTAGTATCGCATAAAAAGGTTTTTGCTTTATATTGCA
CCTAACCATAACCAATGTCTTTTTCTTCCACAGTGAACCATACACCACTG
AAGTCTTTGCATCCAACATCATCAGTAGTATGGTAGAATCAATCAAAGAA
CTTTGTAGCCTCAATATGCCTCCCAACTTTGTAAGTGTAGAAAAACTCTT
TCATATCGATTGATCACCCTCTCATAGTTAGTTTCAAAGTGTGACTGATT
TAACACTGTTAAGCTATAAAAGATTTAGCTTGGTCTATTTGGCCTGGTTT
GGTCCAATTTTTCTGATTTATGTCCACTTCTTTAACGGCATTTCCCCATC
GCGTTCTTTCTAATGCATCCAACTTTGATAAAGTGATGGCGTATTATTTT
GCTTCAACTGTCGTTTCTTATGAAATATAAAGTAGCTCTACGTAGTGTTT
TATGCATTGACTTCCAAGCCCGAAGGGCAGGACTTGAGACTCCTGGATGG
GAAATGAAGCCACGCTCGCGCGTGGTTTTTACACAAACTTCGGGTTGAAA
GTAAAGTCTATCGCTAGATTTAAAAAAATACAGTCTTCAAAAAACAAAGG
AACCACTAGATACAATCCTTCGTCATGATTGCAGCGCGCTCTAGGTGCGT
TCTGGATGGGAAATAAGTGGCTTCACTTTTTCTTGCCTGAGAAGGGTTAC
AGATTCTACTCTAGGCCTTCGGGCTTTAAACTCAATTGTTTTATATAAGA
TATCTTTTGCGTTGAGAGTTGATTGATATGATGTATTATTTCTCAAGAAA
AATAAAAAACAAATCTTTCCTTTCCTCTTTCAGTGTTTATTGCACGTTGA
AGAGCAACTTCGAGATTTATTCAACAAAGGCAAAGTGTTCGCAGAGTACA
GCAACAGCAATGATCACGATGAGTCAGCTAAAAAATCCTTTATGAGAGTT
TTTGGTTATCACAGTACCGACATTGAGTTGTTGAATGCAGTTGGAGGTAC
GTTGACCGTACCTGTGGCTCAAGACGAAACACTTTATGCCGTTTAAAAAT
GTTTTTAAATCAATTGGAATTTCGTGGTACGTTACCATTACGTTTTTACG
TATTACACGTTTTTTTTATTAGAACCCAGTTTATAAGAACATTGAGGCTG
AAATTCGTCGAAAAAATAAGAACATCGTAAGAACATGGCCAGTCTCAGTT
TGGAAAAAAATGACAAGAAAATACAATTTTTTCCTCTTTTCAAGCAGTTT
TAACCGAACTTGGGGATGGATTTTCTAAAATCGAGAGTCAAATATTGTCC
AAATTTTATAAGTGCTCTTTATTTTGCATGATATTGTCGATTTAGAGTAA
AAAAAGTCTAAAAAATTAAGAACGTAACTAAGAACACTTCAAACTGAAAA
CTGTTAAAAAACTAAGCACATCCAGGCTCAGCCAAATTTTAGGTGCTCTA
AAAAAAAAACGTGTATTCTTTTAAAATACACCTTTTTGACCGTAGTCGCG
CGGTCAGACGCGTGCCACTTTATTATTTGATTTACCACCCTAAATGTTGT
TCTAAAGCTTCACAACACAACCTTTTAGGCCTTGTATTTCCTTAGTTTTA
CGCTCTTACGCTCGAAACGAAGTATCATATCTTACGTAGTCTAGGTTTTT
AAGCAAAACTTTCACAAACACAGCTCGCAACTTCGCAACTTTTTTAAGCA
GTTGTTTATTATAATAACTGGTTTAGGTCTTTTAGGAAAATAACAGCTTT
TTTTTATAAAACGACGCCTATTTTTTTAAATGACAAAATTATAAAATTTC
AAAAAATAATTGTCTCAATTTTTTAAACCTGTTGATTTTCGGGTGCAAAA
TTCTATAAAAACTACATTGTACATTGATTACCCTGTACATAACATTTCGC
TTTGTAATAATCAAAATTTAGAATATTTTCATTTCAATATTTTTTTCGTC
ATTTAGTTTGTTTACTTAGTTAGTTTATTTTTTTGCTTGGTTTGTATGTC
TTAGAACTGTGTATAGACTTTTTGAGACTGTTCACTTAACGTTTCCAGAC
CATCTAAAAAGAACGACAAATAACTATTAAAAAGTGAGAAAAAGAACGAC
AAACCCTAACCTTAACTATCAAAAAACAACATGTTGACTGCTACCCCATC
ATATTCATTACTTTTTGCATTTTACGCTATTTAAGGACTAGCGGTTTAAA
GAACGATAAATTACGCACGCGTATAAGTCTCTATTTGGGTGAGCAGGAAG
CATTAGATGAACTAACTCTTTTGAGCGCGGTAAATGGTTGATCTGTTACG
AAATTTCTCTAACATTTACTCTTAAGATCCCATTTAGAAAGTGGTGGAGG
GAATCTCAAAATTCTAGAATTTTAAATTCAGGAATAACATGTTATAATAG
AAATGTCTTAAAATTCTTAGTTTATGTGTTAAAATTTAATTTATTTTTTT
CGTCATTTTCTTATTTTTTCTTTAATACAGTACGTTTTTTGTTTTTCAAT
TTTTGATTTCGATAGTTAATTTTTTTTTGTTTTGATTTAAAATTTTCTAT
ATTATACTAAATAATCCCAAAGCTATTTACAATGCGAGTGACCCCTTAGG
CTGCCAGTATCTCTCTGATTAGTTTTGTTATAACGTATCTTAATCGACTC
AAAAACATCCGCTAATTTTTTGCAAAACAAGTTTTTCGATGGGAATTGTT
GACCTTGTTAAAATTTTGCTGAAAAGGATATTATGGTACAAAAGGTTATA
AATTTGACTGTAGTTAGTCGTTTTTTCGTACTCTTAAATCGTCTAGATAG
TCTAGATTCACATCCTTTATAACAAATATTAGGGAGGTTAAGTATCGAAG
ATAAATCAACGCGACGAACGAGACGGGTTTTGACCCGCAATCTGCAGTAA
ACATGTGGACCTGCATGACCTGCATTTTCTAGAATCCAGGCTAAAGAAGC
TCAAGACCAAAAAACCATGAAAATCTTCGTTGTTGAACAAGGTAGATATA
ACATCTGCTTTGCTACCCTTACAATCTTGCAGAGAAAAGGCCCGTTCGTC
GCGTTGATTTATCTTCAATACTTAACCTCCCTATTATATCAGAGATGTCC
GCAGTCCTGCAAGCCCCGGGCAAAAGGTTTTGTTTCACTTTTGAACGGAT
TCATTATATTCATTACGTAATGATTTCTGTGGAAACACCCCGGTTTTAAT
TTTAAAACTTTTTTCTTTAGCTTAAATTTGATAGTTATCTTTCAATCCTT
CGACGTCAGTCAAACTGTAATGAGATGAGGCTTCCCTTTTGCCGGGCCGT
GCGTGATTCTAGAACCTATTTATTTAAATTTACTCGTTTTGTGAGATTAG
TGCAAAATACAACATTATATATTTGTCTTTTTTAAACATTGATAGCCAAA
CTGGCTCGAGAATATTGAAAAACACTTAGAAATTTAAAACTGAAATTTAA
ATAATTATTGAGAATATAAACTATTTATTTTTTTGAGGAAATGAAATTGT
ATTTTGGTGTTTAGTGTTTTTTTCCCTTTTGTCCCTCTTCGTATTAACTT
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017234XLOC_017234Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030120-exon-sc0000795-1575043694:38640..38762TCONS_00030120-exon-sc0000795-1575043694:38640..38762Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1575043694:38106..38365TCONS_00030120-exon-sc0000795-1575043694:38106..38365Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1575043694:37411..37668TCONS_00030120-exon-sc0000795-1575043694:37411..37668Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1575043694:37054..37172TCONS_00030120-exon-sc0000795-1575043694:37054..37172Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1575043694:36508..36625TCONS_00030120-exon-sc0000795-1575043694:36508..36625Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1575043694:36072..36124TCONS_00030120-exon-sc0000795-1575043694:36072..36124Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1575043694:34301..35794TCONS_00030120-exon-sc0000795-1575043694:34301..35794Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1575043694:33514..33655TCONS_00030120-exon-sc0000795-1575043694:33514..33655Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1575043694:33034..33155TCONS_00030120-exon-sc0000795-1575043694:33034..33155Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1575043694:32083..32179TCONS_00030120-exon-sc0000795-1575043694:32083..32179Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1575043694:28711..31429TCONS_00030120-exon-sc0000795-1575043694:28711..31429Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1510915933:38640..38762TCONS_00030120-exon-sc0000795-1510915933:38640..38762Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1510915933:38106..38365TCONS_00030120-exon-sc0000795-1510915933:38106..38365Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1510915933:37411..37668TCONS_00030120-exon-sc0000795-1510915933:37411..37668Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1510915933:37054..37172TCONS_00030120-exon-sc0000795-1510915933:37054..37172Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1510915933:36508..36625TCONS_00030120-exon-sc0000795-1510915933:36508..36625Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1510915933:36072..36124TCONS_00030120-exon-sc0000795-1510915933:36072..36124Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1510915933:34301..35794TCONS_00030120-exon-sc0000795-1510915933:34301..35794Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1510915933:33514..33655TCONS_00030120-exon-sc0000795-1510915933:33514..33655Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1510915933:33034..33155TCONS_00030120-exon-sc0000795-1510915933:33034..33155Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1510915933:32083..32179TCONS_00030120-exon-sc0000795-1510915933:32083..32179Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1510915933:28711..31429TCONS_00030120-exon-sc0000795-1510915933:28711..31429Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1491911889:38640..38762TCONS_00030120-exon-sc0000795-1491911889:38640..38762Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1491911889:38106..38365TCONS_00030120-exon-sc0000795-1491911889:38106..38365Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1491911889:37411..37668TCONS_00030120-exon-sc0000795-1491911889:37411..37668Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1491911889:37054..37172TCONS_00030120-exon-sc0000795-1491911889:37054..37172Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1491911889:36508..36625TCONS_00030120-exon-sc0000795-1491911889:36508..36625Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1491911889:36072..36124TCONS_00030120-exon-sc0000795-1491911889:36072..36124Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1491911889:34301..35794TCONS_00030120-exon-sc0000795-1491911889:34301..35794Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1491911889:33514..33655TCONS_00030120-exon-sc0000795-1491911889:33514..33655Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1491911889:33034..33155TCONS_00030120-exon-sc0000795-1491911889:33034..33155Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1491911889:32083..32179TCONS_00030120-exon-sc0000795-1491911889:32083..32179Clytia hemisphaericaexon
TCONS_00030120-exon-sc0000795-1491911889:28711..31429TCONS_00030120-exon-sc0000795-1491911889:28711..31429Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000795supercontigsc0000795:28711..38762 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.681151	0.437329	0.427422	2.63957e-09	0	0	4.04654e-10	0.00507122	0.342503	2.2705	0	0.462116	0.506845	0.117999	0.670773	0.66311	0.0743839	0.698421	0.603407	1.0216	0.462223	0.257723	0	0.204988	0	5.36083e-08	1.0262	1.03284	0.715284	0.742867
Blast
[Close]
BLAST of TCONS_00030120 vs. Swiss-Prot (Human)
Match: FNIP1 (Folliculin-interacting protein 1 OS=Homo sapiens GN=FNIP1 PE=1 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 2.447e-53
Identity = 109/276 (39.49%), Postives = 163/276 (59.06%), Query Frame = 3 
Query:  294 AGSFRYRFSRSKKTSLDSPVW-RSRTEQSEEL-------RSVYKQQPKIGVGIIFNLWDNAEDNRAFQDFFFSHYTLFEAQLQAFRVKIEKSFYLRQKFLDTA---------VEALEGFREDVLRLCYTPRIIEPVWLNLTSTVERKQKECASKFFNTFLEIYDMCENKETSYFLSNLMTAVLTHHLSWINTVISCEKNSKKCSLNKHASSTIDILARCHPYNPLWAQICDLYGCLGSPFKLARTVIVGKNIKLISKILQFLTYFIRCCEVQENFI 1070
            A S++ R+ RS+ TSL++ V+ R   E+S  L            ++ KI +G+IF+L  + ++N  F +FFFSH+ LFE+ +   +  IE++  + ++  D +         V+AL  FR  +  L   PRI EPVWL + S    K   C    +    E   + EN   + FL  L+TAVLT+HL+W+ TV+   +   K  L KH+S ++D+LA+ HPYNPLWAQ+ DLYG +GSP +LARTV+VGK   ++ ++L FLTYFIRC E+QE  +
Sbjct:  282 ASSYQRRWRRSQTTSLENGVFPRWSIEESFNLSDESCGPNPGIVRKKKIAIGVIFSLSKDEDENNKFNEFFFSHFPLFESHMNKLKSAIEQAMKMSRRSADASQRSLAYNRIVDALNEFRTTICNLYTMPRIGEPVWLTMMSGTPEKNHLC----YRFMKEFTFLMENASKNQFLPALITAVLTNHLAWVPTVMPNGQPPIKIFLEKHSSQSVDMLAKTHPYNPLWAQLGDLYGAIGSPVRLARTVVVGKRQDMVQRLLYFLTYFIRCSELQETHL 553

HSP 2 Score: 118.627 bits (296), Expect = 1.551e-26
Identity = 66/177 (37.29%), Postives = 103/177 (58.19%), Query Frame = 3 
Query: 2451 FGKSMLAGYTENYLGDFVLQGCKSIDQAQ--LANDLLRTVKYSVLDEEINDAVCIVADTDNWTCEVRGMSKRIGQHNQNTSFEPYTTEVFASNIISSMVESIKELCSLNMPPNFCLLHVEEQLRDLFNKGKVFAEYSNSNDHDESAKKSFMRVFGYHSTDIELLNAVGGTLTVPVAQ 2975
            FG+S+L GY  +Y+ DFVLQG  S ++ +  L +DL   V++ VLDE I +AVCI+AD D WT +V    +R+  +           EV  S+++S+++ S  +L   N+ PNFC++H+E++L++L+ K K+ +EY           K    V G  S+D+ LL AV  T +  VAQ
Sbjct:  996 FGRSLLGGYCSSYVPDFVLQGIGSDERFRQCLMSDLSHAVQHPVLDEPIAEAVCIIADMDKWTVQVASSQRRVTDNK-------LGKEVLVSSLVSNLLHSTLQLYKHNLSPNFCVMHLEDRLQELYFKSKMLSEYLRG--QMRVHVKELGVVLGIESSDLPLLAAVASTHSPYVAQ 1163
The following BLAST results are available for this feature:
BLAST of TCONS_00030120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FNIP12.447e-5339.49Folliculin-interacting protein 1 OS=Homo sapiens G... [more]
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