TCONS_00029382 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029382
Unique NameTCONS_00029382
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029382 ID=TCONS_00029382|Name=TCONS_00029382|organism=Clytia hemisphaerica|type=transcript|length=414bp
CGTAAAAGAGCCTCCTTCAATCCTGATGATGCGATCATTATAGTGTCTCT
TTTTTTCCCTTTCGTTAGCTTCAAACATGCTAGAGGGGCTCTTCCTAGAG
TACCTTTGGGCATAGGCATTGAATACCCTAACATCAAAAAATGCCCTCTG
GCCTCTAGTCCAGAACCCCATAGCGCTGATATCCGCTCTTGCTCCGTCCT
CTCTGATCGTGCCAGGTGTTAAGTCCTCTCCAGTAATGGGTTCTAGGCTT
GGCTCGACCGCAACATCTTTCTTGACTTCACTCAGTAGTGTCGATAGAGT
GTCTCTTATCTCATTGTGTCTCTTATAGACGAAACCTCCTTTTGGGCACG
ATAGTGCATGTTCGATTGTGAAACGATTACCACATGCGCAATTGGTGGGG
AGATGTTTCAGTTG
Run BLAST on NCBI

protein sequence of TCONS_00029382-protein

>TCONS_00029382-protein ID=TCONS_00029382-protein|Name=TCONS_00029382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
QLKHLPTNCACGNRFTIEHALSCPKGGFVYKRHNEIRDTLSTLLSEVKKD
VAVEPSLEPITGEDLTPGTIREDGARADISAMGFWTRGQRAFFDVRVFNA
YAQRYSRKSPSSMFEANEREKKRHYNDRIIRIEGGSFT
Run BLAST on NCBI

transcript from alignment at sc0000744:118573..118986

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029382 ID=TCONS_00029382|Name=TCONS_00029382|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at sc0000744:118573..118986 (Clytia hemisphaerica)
CAACTGAAACATCTCCCCACCAATTGCGCATGTGGTAATCGTTTCACAAT
CGAACATGCACTATCGTGCCCAAAAGGAGGTTTCGTCTATAAGAGACACA
ATGAGATAAGAGACACTCTATCGACACTACTGAGTGAAGTCAAGAAAGAT
GTTGCGGTCGAGCCAAGCCTAGAACCCATTACTGGAGAGGACTTAACACC
TGGCACGATCAGAGAGGACGGAGCAAGAGCGGATATCAGCGCTATGGGGT
TCTGGACTAGAGGCCAGAGGGCATTTTTTGATGTTAGGGTATTCAATGCC
TATGCCCAAAGGTACTCTAGGAAGAGCCCCTCTAGCATGTTTGAAGCTAA
CGAAAGGGAAAAAAAGAGACACTATAATGATCGCATCATCAGGATTGAAG
GAGGCTCTTTTACG

Coding sequence (CDS) from alignment at sc0000744:118573..118986

>TCONS_00029382 ID=TCONS_00029382|Name=TCONS_00029382|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000744:118573..118986 (Clytia hemisphaerica)
CAACTGAAACATCTCCCCACCAATTGCGCATGTGGTAATCGTTTCACAAT
CGAACATGCACTATCGTGCCCAAAAGGAGGTTTCGTCTATAAGAGACACA
ATGAGATAAGAGACACTCTATCGACACTACTGAGTGAAGTCAAGAAAGAT
GTTGCGGTCGAGCCAAGCCTAGAACCCATTACTGGAGAGGACTTAACACC
TGGCACGATCAGAGAGGACGGAGCAAGAGCGGATATCAGCGCTATGGGGT
TCTGGACTAGAGGCCAGAGGGCATTTTTTGATGTTAGGGTATTCAATGCC
TATGCCCAAAGGTACTCTAGGAAGAGCCCCTCTAGCATGTTTGAAGCTAA
CGAAAGGGAAAAAAAGAGACACTATAATGATCGCATCATCAGGATTGAAG
GAGGCTCTTTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016758XLOC_016758Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029382-exon-sc0000744-1491911889:118573..118986TCONS_00029382-exon-sc0000744-1491911889:118573..118986Clytia hemisphaericaexon
TCONS_00029382-exon-sc0000744-1510915933:118573..118986TCONS_00029382-exon-sc0000744-1510915933:118573..118986Clytia hemisphaericaexon
TCONS_00029382-exon-sc0000744-1575043694:118573..118986TCONS_00029382-exon-sc0000744-1575043694:118573..118986Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029382-proteinTCONS_00029382-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000744supercontigsc0000744:118573..118986 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.168763	0.673363	0	7.93997	5.40022	5.82076	2.23664	4.25408	4.156	2.79045	5.37672	5.81796	4.54273	0.0717196	0.105459	0	0.399483	0	0	0	0.211771	0	0.180401	5.80504	5.17408	0.362404	0	0.319299	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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