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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029348 ID=TCONS_00029348|Name=TCONS_00029348|organism=Clytia hemisphaerica|type=transcript|length=2245bp
cTTTACAGTCTTTACGTTgtcaaacatcaaatcaataatCGGCAGGCGGA
CATTGGATTGTTCACCTAGATGGAAGACCATCGAAAGCACTTCCAAGTAT
TCCAAaaattacaAAAACAAATTTACGTTGCAAATCTTCAAATAATGGGT
AAACCATATGATGGATCAAGTCTTGATGATAACCATTCTTTATGGGAAGA
AATCGATAACCAGACGAATGCAGTGTTGGATAATATTATAATACAGTGGT
GTGGCAGAGGGTATTTTCTTCTGTGTGTCATTCCGGTTACAACAAGATAA
TATAACAATCGTTCGATTCTTTGAGCATGGTTCTTACAAAGGTGCGATGA
AAAGtACGATGCAAGAGACCATTAACACTATGATCGAAGACGAAAACTCG
CATTACATTGAAGTCTACAACTACATCGACCATGATGTGGAGAACAAATT
AAAACGGGAATCTCTACTCAAAATGAAGAAAGGTGAAAAGACGAATATCG
TTTCTAGACGTTTCCTTCGACTAAAATGACAGAGTTATAACAACTTCGAC
GAACTTTAACAGTCCGTGATACGTAATTTCTTTCATCTTACAGCAAGTTG
TTAGTCTTTTTGTAGATGGTGGCTTTCATTTTTCGGGActtatgatattt
ttgaaatgtaCAATATTTACGACTTCCAACCCTGACCATAACTAAAATAA
CGAGTCTCGGTAATTttctagttggtgagttgggGAGGTGGGTAGTTGca
agtttcgagttggggagttgctataAAATTACGGCAACCGAAAACTATAG
AGTTAAATTCATGTAgttcaaaagtacaaatttcaaataagCCAGTACCA
ACCATATTATTGGCCTTTAAGATCCTGAAAATAgtaaggtgctggctagc
aaagccaaaataatTAGTATTTCTGAAAATGTCATTGTCATAATGCTGAC
ATGACActttcttgtaaaaatattgacaaaatctttaaatataaTGATTA
TCAAGGAAATTCCCCGAAAAATATTAATCATACaggatataagttgacag
tcatTTTAGCCTTATAAAGTACGTAGAGTTAGCATATAGAGCTAGAAAAA
CAATGAcgctttcttttgtcattttatcattttatcattaggattgacac
tttttataaaaattttgatgaaactataaataaatggatatgaattgaca
gtagaaaatagctttcgATGCTCTCAACGCACGTGTTTCAGGGAAATGAG
CATATAACGTGTTATATGTATTATACGTCttacatatattatatattact
ctcatattacatttactttcaaaatatacttttgatgtatgttactcttt
ttcggtagccggtaatttttcaactccccaactcgcgactagaatagttt
ccaaactcATAAATAACCTATCCTAACTCGAACAACAAATCTAATTTGTT
GGAACTACAGAGTTTGCTATATAATCtattttcagaatcttcaaatattc
aatgttttttttgtttttataaaactttcGGAATTCAAAAGTTAATGGCC
AGATCACAAACACTGTATGCAAGTACTCCAAGTAAAAAAGTCATGGAAAA
TTGATTTCGTATAGACTTCACAGCATAGTTCCTAGGGGAGTACTTTTTTC
TGTAGGGGGTACATATTTCCTAGGAGAAATGTACTTCCGGGAGTACTTTT
ATCCTAGGAAATAAGTATTGGGGAGTACTTAAAGCCATATTGACATTACT
TTTTCCCGATGTCTGAATTGCTCCTTCAAAAACGCTGAGCTTGCACAAAC
GAGGCATTTCTCCgaccaatcatcaaaacaaaaaagcgCGCTTAACGTCA
GTTAATTGATCGATTCGACACTACAATGTCTTCTTTATGATAAAAGATTT
TGACGACCAGATTGTTTGCAatgttttgacttcaaaatgttgtacaagaa
ttggaatgaaCCGTCTGCGTTTTTAATGGAGTTTTGCAATGCTTTTGCAG
AATAAGCAAACAGATCTATGGACAGATATACTGGCTTCAAATCTGGGAAA
TAAGTATTGGGGAGTACTTTTTTTCGGGGAGTACTTTTTTCCTGTGACAC
CGGAActcgtaaaaatatttttcgtatcATGGTCGGAACCATgagataac
tattacatattctGTTCTGTTCTGTTctataatctcatggttgattgaaa
ttcgattgacgtttttgcttacgttaatttgtaatttcccgcgNN Run BLAST on NCBI transcript from alignment at sc0000744:17560..22115+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029348 ID=TCONS_00029348|Name=TCONS_00029348|organism=Clytia hemisphaerica|type=transcript|length=4556bp|location=Sequence derived from alignment at sc0000744:17560..22115+ (Clytia hemisphaerica)
cTTTACAGTCTTTACGTTgtcaaacatcaaatcaataatCGGCAGGCGGA
CATTGGATTGTTCACCTAGATGGAAGACCATCGAAAGCACTTCCAAGTAT
TCCAAGTaagtatttctattgttttcaagcaaaagttAAAAACTTTAGAA
TTAAATATCAATTAGCTTTGGAAAATGATTgggtcaaaaaagtttttctc
agGATCACGGAAGGTATCTCTAGGCCGAATATCaaaaaccatctgattat
ccctttaagaatgatttgaatccaAATGATTGGAAAATTGATGCTTTTTG
GGGTACAGCACCCAGGAAAATCGTCGTTTTAGGCTTAATGAGGCCAAATT
AGCCTAATTGGCCCTAATTAAGAGGGTAACCCTCTTAATTATCTTGGTTT
ACCCTTCTAATATTAATCTATAGGGTATAATGAGCATCTGGTCCAAATTT
GGTGAtttgttccaaatttgcacGATTTTAACACAAATCGGGCCTACTAT
TTTATCCCAAATTTGTCTGACTATAGCGGGTTTCCTTTAAATTTGCCCTC
TCTTTATANCTGGTCCAAATTTGGTGAtttgttccaaatttgcacGATTT
TAACACAAATCGGGCCTACTATTTTATCCCAAATTTGTCTGACTATAGCG
GGTTTCCTTTAAATTTGCACTCTCTTTATGTGCGCTTCGTCTTTTAAAAC
GCTTGTTCATAAACTCTCCCAGCTCATTTTTGAGAGCTGAAGATAAAACG
ATAAAAGTGTTGAATCAGTTTATTTGTttaatctgattggttaaataAAT
ACGAACTATAGAAAAATATGATATGCGCTTGTGGAAGTTGAGGTATTTCA
ACTTCAATGGCGTTTTTTGTGCGCTCTggaagagaaatttttttcttgtt
ttatgaCGTCAATATAAATAATTaatgaatttcagatttttaacaAAAGG
CGGGGCACATAAAAACAGCGCACACGTTTTTGGTAAAGCATTGGTTAATT
TTAGTTTTGAGANTTGATGACATTTTATATGCTAGTAGCCATTTTTAGCC
CGTTTCATCTTTCatatttcaaatcttttattttagaaattacaAAAACA
AATTTACGTTGCAAATCTTCAAATAATGGGTAAACCATATGATGGATCAA
GTCTTGATGATAACCATTCTTTATGGGAAGGTATATTTTGCCAGCTTTTG
TATCTATTTTCATTAATTTGTACCTTCCTTGAAACTTATACCCTGTCTTG
TTTTAAAAGTTAAACTATTTATTGAAGATTCTTTAATTATATTTTCAGAA
ATCCATAACCAGACGAATGCAGTGTTGANAACTTGAAATGATAAAAGTCT
TGTTTAAATGATGTGATAGTAATATCTGTTTACAATAATCCTTTCTGATA
ATGTATGGTGTATGATGGATGGTGTGAGTCGAACAATCCAACGCAGAATC
AATTGAACGCTCAAACGCAATTGAATCGcgatcaaatattacccaggatt
tgtcCACtcaattgagattcaattgcgttcgacaatcaaatcgCAATTAT
TCTATATCGCTTTCGGTTCGATTGCAATTTTCTTTTAAGCTTGTTCAATT
TACACCATCTGGAAATAGCAACATATTGCTAAGATTGCAGCCAATGAGAA
GTATGAATAAAATTAGGCAAGTCACTTTGGATTGGCTactttgctttcaa
agtttgtaTTTTGCTTCGCCTTCAATATGGCTGCCACCACCgtctataga
ccttttcgccatTGATGACATTTTATATGCTAGTAGCCATTTTTAGCCCG
TTTCATCTTTCatatttcaaatcttttattttagaaattacaAAAACAAA
TTTACGTTGCAAATCTTCAAATAATGGGTAAACCATATGATGGATCAAGT
CTTGATGATAACCATTCTTTATGGGAAGGTATATTTTGCCAGCTTTTGTA
TCTATTTTCATTAATTTGTACCTTCCTTGAAACTTATACCCTGTCTTGTT
TTAAAAGTTAAACTATTTATTGAAGATTCTTTAATTATATTTTCAGAAAT
CGATAACCAGACGAATGCAGTGTTGGATAATATTATAATACAGTGGTGTG
GCAGAGGGTATTTTCTTCTGTGTGTCATTCCGGTTACAACAAGATAATAT
AACAATCGTTCGATTCTTTGAGCATGGTTCTTACAAAGGTGCGATGAAAA
GGTAAATATAGTGCGTTCATTCTAACTTGGTTGATGTCTTTTTTAAAAAC
ACTCAATTGTTTTCGatggttgaaagaaaagaattCCACTTGAAAGTCAT
TAACGATTAACCAAGTTAGAGTGAACGCATTATAACGTTTTATTTAAATT
CGATTTTTGTCGTCAGTGATAACTTGTGGCATGATAAATacatcttttat
ttttatatctttattcACAGAATTATATTCTGTTTATTAGGGGAGATTTC
TTTCTCGTATTGAATATTACTCATTAGTGTTCACAAAATGATCTGTAGGC
AACGTATGCTAGACGACTTATTTCAGAAGAAAATAGGACGTCGAAAATAG
CATCAGTATCTTgacaaacaaaaatgaaattttttggcTTTCAATAAAAG
CACTTTAAATAAACGACGTAGCAAGAACTTTAACATCGATGACGTCtcat
ttttcacattttcagtACGATGCAAGAGACCATTAACACTATGATCGAAG
ACGAAAACTCGCATTACATTGAAGTCTACAACTACATCGACCATGATGTG
GAGAACAAATTAAAACGGGAATCTCTACTCAAAATGAAGAAAGGTGAAAA
GACGAATATCGTTTCTAGACGTTTCCTTCGACTAAAATGACAGAGTTATA
ACAACTTCGACGAACTTTAACAGTCCGTGATACGTAATTTCTTTCATCTT
ACAGCAAGTTGTTAGTCTTTTTGTAGATGGTGGCTTTCATTTTTCGGGAc
ttatgatatttttgaaatgtaCAATATTTACGACTTCCAACCCTGACCAT
AACTAAAATAACGAGTCTCGGTAATTttctagttggtgagttgggGAGGT
GGGTAGTTGcaagtttcgagttggggagttgctataAAATTACGGCAACC
GAAAACTATAGAGTTAAATTCATGTAgttcaaaagtacaaatttcaaata
agCCAGTACCAACCATATTATTGGCCTTTAAGATCCTGAAAATAgtaagg
tgctggctagcaaagccaaaataatTAGTATTTCTGAAAATGTCATTGTC
ATAATGCTGACATGACActttcttgtaaaaatattgacaaaatctttaaa
tataaTGATTATCAAGGAAATTCCCCGAAAAATATTAATCATACaggata
taagttgacagtcatTTTAGCCTTATAAAGTACGTAGAGTTAGCATATAG
AGCTAGAAAAACAATGAcgctttcttttgtcattttatcattttatcatt
aggattgacactttttataaaaattttgatgaaactataaataaatggat
atgaattgacagtagaaaatagctttcgATGCTCTCAACGCACGTGTTTC
AGGGAAATGAGCATATAACGTGTTATATGTATTATACGTCttacatatat
tatatattactctcatattacatttactttcaaaatatacttttgatgta
tgttactctttttcggtagccggtaatttttcaactccccaactcgcgac
tagaatagtttccaaactcATAAATAACCTATCCTAACTCGAACAACAAA
TCTAATTTGTTGGAACTACAGAGTTTGCTATATAATCtattttcagaatc
ttcaaatattcaatgttttttttgtttttataaaactttcGGAATTCAAA
AGTTAATGGCCAGATCACAAACACTGTATGCAAGTACTCCAAGTAAAAAA
GTCATGGAAAATTGATTTCGTATAGACTTCACAGCATAGTTCCTAGGGGA
GTACTTTTTTCTGTAGGGGGTACATATTTCCTAGGAGAAATGTACTTCCG
GGAGTACTTTTATCCTAGGAAATAAGTATTGGGGAGTACTTAAAGCCATA
TTGACATTACTTTTTCCCGATGTCTGAATTGCTCCTTCAAAAACGCTGAG
CTTGCACAAACGAGGCATTTCTCCgaccaatcatcaaaacaaaaaagcgC
GCTTAACGTCAGTTAATTGATCGATTCGACACTACAATGTCTTCTTTATG
ATAAAAGATTTTGACGACCAGATTGTTTGCAatgttttgacttcaaaatg
ttgtacaagaattggaatgaaCCGTCTGCGTTTTTAATGGAGTTTTGCAA
TGCTTTTGCAGAATAAGCAAACAGATCTATGGACAGATATACTGGCTTCA
AATCTGGGAAATAAGTATTGGGGAGTACTTTTTTTCGGGGAGTACTTTTT
TCCTGTGACACCGGAActcgtaaaaatatttttcgtatcATGGTCGGAAC
CATgagataactattacatattctGTTCTGTTCTGTTctataatctcatg
gttgattgaaattcgattgacgtttttgcttacgttaatttgtaatttcc
cgcgNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029348-exon-sc0000744-1491911889:17560..17664 | TCONS_00029348-exon-sc0000744-1491911889:17560..17664 | Clytia hemisphaerica | exon |
| TCONS_00029348-exon-sc0000744-1510915933:17560..17664 | TCONS_00029348-exon-sc0000744-1510915933:17560..17664 | Clytia hemisphaerica | exon |
| TCONS_00029348-exon-sc0000744-1575043694:17560..17664 | TCONS_00029348-exon-sc0000744-1575043694:17560..17664 | Clytia hemisphaerica | exon |
| TCONS_00029348-exon-sc0000744-1491911889:18646..18739 | TCONS_00029348-exon-sc0000744-1491911889:18646..18739 | Clytia hemisphaerica | exon |
| TCONS_00029348-exon-sc0000744-1510915933:18646..18739 | TCONS_00029348-exon-sc0000744-1510915933:18646..18739 | Clytia hemisphaerica | exon |
| TCONS_00029348-exon-sc0000744-1575043694:18646..18739 | TCONS_00029348-exon-sc0000744-1575043694:18646..18739 | Clytia hemisphaerica | exon |
| TCONS_00029348-exon-sc0000744-1491911889:19606..19760 | TCONS_00029348-exon-sc0000744-1491911889:19606..19760 | Clytia hemisphaerica | exon |
| TCONS_00029348-exon-sc0000744-1510915933:19606..19760 | TCONS_00029348-exon-sc0000744-1510915933:19606..19760 | Clytia hemisphaerica | exon |
| TCONS_00029348-exon-sc0000744-1575043694:19606..19760 | TCONS_00029348-exon-sc0000744-1575043694:19606..19760 | Clytia hemisphaerica | exon |
| TCONS_00029348-exon-sc0000744-1491911889:20225..22115 | TCONS_00029348-exon-sc0000744-1491911889:20225..22115 | Clytia hemisphaerica | exon |
| TCONS_00029348-exon-sc0000744-1510915933:20225..22115 | TCONS_00029348-exon-sc0000744-1510915933:20225..22115 | Clytia hemisphaerica | exon |
| TCONS_00029348-exon-sc0000744-1575043694:20225..22115 | TCONS_00029348-exon-sc0000744-1575043694:20225..22115 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000744 | supercontig | sc0000744:17560..22115 + |
Blast
The following BLAST results are available for this feature:
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