XLOC_016740 (gene) - C. hemisphaerica

Overview
NameXLOC_016740
Unique NameXLOC_016740
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000744:17560..22115+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016740 ID=XLOC_016740|Name=XLOC_016740|organism=Clytia hemisphaerica|type=gene|length=4556bp|location=Sequence derived from alignment at sc0000744:17560..22115+ (Clytia hemisphaerica)
cTTTACAGTCTTTACGTTgtcaaacatcaaatcaataatCGGCAGGCGGA
CATTGGATTGTTCACCTAGATGGAAGACCATCGAAAGCACTTCCAAGTAT
TCCAAGTaagtatttctattgttttcaagcaaaagttAAAAACTTTAGAA
TTAAATATCAATTAGCTTTGGAAAATGATTgggtcaaaaaagtttttctc
agGATCACGGAAGGTATCTCTAGGCCGAATATCaaaaaccatctgattat
ccctttaagaatgatttgaatccaAATGATTGGAAAATTGATGCTTTTTG
GGGTACAGCACCCAGGAAAATCGTCGTTTTAGGCTTAATGAGGCCAAATT
AGCCTAATTGGCCCTAATTAAGAGGGTAACCCTCTTAATTATCTTGGTTT
ACCCTTCTAATATTAATCTATAGGGTATAATGAGCATCTGGTCCAAATTT
GGTGAtttgttccaaatttgcacGATTTTAACACAAATCGGGCCTACTAT
TTTATCCCAAATTTGTCTGACTATAGCGGGTTTCCTTTAAATTTGCCCTC
TCTTTATANCTGGTCCAAATTTGGTGAtttgttccaaatttgcacGATTT
TAACACAAATCGGGCCTACTATTTTATCCCAAATTTGTCTGACTATAGCG
GGTTTCCTTTAAATTTGCACTCTCTTTATGTGCGCTTCGTCTTTTAAAAC
GCTTGTTCATAAACTCTCCCAGCTCATTTTTGAGAGCTGAAGATAAAACG
ATAAAAGTGTTGAATCAGTTTATTTGTttaatctgattggttaaataAAT
ACGAACTATAGAAAAATATGATATGCGCTTGTGGAAGTTGAGGTATTTCA
ACTTCAATGGCGTTTTTTGTGCGCTCTggaagagaaatttttttcttgtt
ttatgaCGTCAATATAAATAATTaatgaatttcagatttttaacaAAAGG
CGGGGCACATAAAAACAGCGCACACGTTTTTGGTAAAGCATTGGTTAATT
TTAGTTTTGAGANTTGATGACATTTTATATGCTAGTAGCCATTTTTAGCC
CGTTTCATCTTTCatatttcaaatcttttattttagaaattacaAAAACA
AATTTACGTTGCAAATCTTCAAATAATGGGTAAACCATATGATGGATCAA
GTCTTGATGATAACCATTCTTTATGGGAAGGTATATTTTGCCAGCTTTTG
TATCTATTTTCATTAATTTGTACCTTCCTTGAAACTTATACCCTGTCTTG
TTTTAAAAGTTAAACTATTTATTGAAGATTCTTTAATTATATTTTCAGAA
ATCCATAACCAGACGAATGCAGTGTTGANAACTTGAAATGATAAAAGTCT
TGTTTAAATGATGTGATAGTAATATCTGTTTACAATAATCCTTTCTGATA
ATGTATGGTGTATGATGGATGGTGTGAGTCGAACAATCCAACGCAGAATC
AATTGAACGCTCAAACGCAATTGAATCGcgatcaaatattacccaggatt
tgtcCACtcaattgagattcaattgcgttcgacaatcaaatcgCAATTAT
TCTATATCGCTTTCGGTTCGATTGCAATTTTCTTTTAAGCTTGTTCAATT
TACACCATCTGGAAATAGCAACATATTGCTAAGATTGCAGCCAATGAGAA
GTATGAATAAAATTAGGCAAGTCACTTTGGATTGGCTactttgctttcaa
agtttgtaTTTTGCTTCGCCTTCAATATGGCTGCCACCACCgtctataga
ccttttcgccatTGATGACATTTTATATGCTAGTAGCCATTTTTAGCCCG
TTTCATCTTTCatatttcaaatcttttattttagaaattacaAAAACAAA
TTTACGTTGCAAATCTTCAAATAATGGGTAAACCATATGATGGATCAAGT
CTTGATGATAACCATTCTTTATGGGAAGGTATATTTTGCCAGCTTTTGTA
TCTATTTTCATTAATTTGTACCTTCCTTGAAACTTATACCCTGTCTTGTT
TTAAAAGTTAAACTATTTATTGAAGATTCTTTAATTATATTTTCAGAAAT
CGATAACCAGACGAATGCAGTGTTGGATAATATTATAATACAGTGGTGTG
GCAGAGGGTATTTTCTTCTGTGTGTCATTCCGGTTACAACAAGATAATAT
AACAATCGTTCGATTCTTTGAGCATGGTTCTTACAAAGGTGCGATGAAAA
GGTAAATATAGTGCGTTCATTCTAACTTGGTTGATGTCTTTTTTAAAAAC
ACTCAATTGTTTTCGatggttgaaagaaaagaattCCACTTGAAAGTCAT
TAACGATTAACCAAGTTAGAGTGAACGCATTATAACGTTTTATTTAAATT
CGATTTTTGTCGTCAGTGATAACTTGTGGCATGATAAATacatcttttat
ttttatatctttattcACAGAATTATATTCTGTTTATTAGGGGAGATTTC
TTTCTCGTATTGAATATTACTCATTAGTGTTCACAAAATGATCTGTAGGC
AACGTATGCTAGACGACTTATTTCAGAAGAAAATAGGACGTCGAAAATAG
CATCAGTATCTTgacaaacaaaaatgaaattttttggcTTTCAATAAAAG
CACTTTAAATAAACGACGTAGCAAGAACTTTAACATCGATGACGTCtcat
ttttcacattttcagtACGATGCAAGAGACCATTAACACTATGATCGAAG
ACGAAAACTCGCATTACATTGAAGTCTACAACTACATCGACCATGATGTG
GAGAACAAATTAAAACGGGAATCTCTACTCAAAATGAAGAAAGGTGAAAA
GACGAATATCGTTTCTAGACGTTTCCTTCGACTAAAATGACAGAGTTATA
ACAACTTCGACGAACTTTAACAGTCCGTGATACGTAATTTCTTTCATCTT
ACAGCAAGTTGTTAGTCTTTTTGTAGATGGTGGCTTTCATTTTTCGGGAc
ttatgatatttttgaaatgtaCAATATTTACGACTTCCAACCCTGACCAT
AACTAAAATAACGAGTCTCGGTAATTttctagttggtgagttgggGAGGT
GGGTAGTTGcaagtttcgagttggggagttgctataAAATTACGGCAACC
GAAAACTATAGAGTTAAATTCATGTAgttcaaaagtacaaatttcaaata
agCCAGTACCAACCATATTATTGGCCTTTAAGATCCTGAAAATAgtaagg
tgctggctagcaaagccaaaataatTAGTATTTCTGAAAATGTCATTGTC
ATAATGCTGACATGACActttcttgtaaaaatattgacaaaatctttaaa
tataaTGATTATCAAGGAAATTCCCCGAAAAATATTAATCATACaggata
taagttgacagtcatTTTAGCCTTATAAAGTACGTAGAGTTAGCATATAG
AGCTAGAAAAACAATGAcgctttcttttgtcattttatcattttatcatt
aggattgacactttttataaaaattttgatgaaactataaataaatggat
atgaattgacagtagaaaatagctttcgATGCTCTCAACGCACGTGTTTC
AGGGAAATGAGCATATAACGTGTTATATGTATTATACGTCttacatatat
tatatattactctcatattacatttactttcaaaatatacttttgatgta
tgttactctttttcggtagccggtaatttttcaactccccaactcgcgac
tagaatagtttccaaactcATAAATAACCTATCCTAACTCGAACAACAAA
TCTAATTTGTTGGAACTACAGAGTTTGCTATATAATCtattttcagaatc
ttcaaatattcaatgttttttttgtttttataaaactttcGGAATTCAAA
AGTTAATGGCCAGATCACAAACACTGTATGCAAGTACTCCAAGTAAAAAA
GTCATGGAAAATTGATTTCGTATAGACTTCACAGCATAGTTCCTAGGGGA
GTACTTTTTTCTGTAGGGGGTACATATTTCCTAGGAGAAATGTACTTCCG
GGAGTACTTTTATCCTAGGAAATAAGTATTGGGGAGTACTTAAAGCCATA
TTGACATTACTTTTTCCCGATGTCTGAATTGCTCCTTCAAAAACGCTGAG
CTTGCACAAACGAGGCATTTCTCCgaccaatcatcaaaacaaaaaagcgC
GCTTAACGTCAGTTAATTGATCGATTCGACACTACAATGTCTTCTTTATG
ATAAAAGATTTTGACGACCAGATTGTTTGCAatgttttgacttcaaaatg
ttgtacaagaattggaatgaaCCGTCTGCGTTTTTAATGGAGTTTTGCAA
TGCTTTTGCAGAATAAGCAAACAGATCTATGGACAGATATACTGGCTTCA
AATCTGGGAAATAAGTATTGGGGAGTACTTTTTTTCGGGGAGTACTTTTT
TCCTGTGACACCGGAActcgtaaaaatatttttcgtatcATGGTCGGAAC
CATgagataactattacatattctGTTCTGTTCTGTTctataatctcatg
gttgattgaaattcgattgacgtttttgcttacgttaatttgtaatttcc
cgcgNN
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00029348TCONS_00029348Clytia hemisphaericatranscript
TCONS_00029349TCONS_00029349Clytia hemisphaericatranscript
TCONS_00029350TCONS_00029350Clytia hemisphaericatranscript
TCONS_00029351TCONS_00029351Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000744supercontigsc0000744:17560..22115 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.85	3.79	2.45	1.56	16.52	10.2	11.38	11.7	10.23	8.59	7.52	9.9	4.89	6.66	6.14	6	6.7	6.38	3.36	4.69	12.29	10.87	4.58	5.77	6.32	6.69	10.89	6.58	4.22	3.02