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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029350 ID=TCONS_00029350|Name=TCONS_00029350|organism=Clytia hemisphaerica|type=transcript|length=2378bp
TTTAAGCTTGTTCAATTTACACCATCTGGAAATAGCAACATATTGCTAAG
ATTGCAGCCAATGAGAAGTATGAATAAAATTAGGCAAGTCACTTTGGATT
GGCTactttgctttcaaagtttgtaTTTTGCTTCGCCTTCAATATGGCTG
CCACCACCgtctatagaccttttcgccatTGATGACATTTTATATGCTAG
TAGCCATTTTTAGCCCGTTTCATCTTTCatatttcaaatcttttatttta
gaaattacaAAAACAAATTTACGTTGCAAATCTTCAAATAATGGGTAAAC
CATATGATGGATCAAGTCTTGATGATAACCATTCTTTATGGGAAGAAATC
GATAACCAGACGAATGCAGTGTTGGATAATATTATAATACAGTGGTGTGG
CAGAGGGTATTTTCTTCTGTGTGTCATTCCGGTTACAACAAGATAATATA
ACAATCGTTCGATTCTTTGAGCATGGTTCTTACAAAGtACGATGCAAGAG
ACCATTAACACTATGATCGAAGACGAAAACTCGCATTACATTGAAGTCTA
CAACTACATCGACCATGATGTGGAGAACAAATTAAAACGGGAATCTCTAC
TCAAAATGAAGAAAGGTGAAAAGACGAATATCGTTTCTAGACGTTTCCTT
CGACTAAAATGACAGAGTTATAACAACTTCGACGAACTTTAACAGTCCGT
GATACGTAATTTCTTTCATCTTACAGCAAGTTGTTAGTCTTTTTGTAGAT
GGTGGCTTTCATTTTTCGGGActtatgatatttttgaaatgtaCAATATT
TACGACTTCCAACCCTGACCATAACTAAAATAACGAGTCTCGGTAATTtt
ctagttggtgagttgggGAGGTGGGTAGTTGcaagtttcgagttggggag
ttgctataAAATTACGGCAACCGAAAACTATAGAGTTAAATTCATGTAgt
tcaaaagtacaaatttcaaataagCCAGTACCAACCATATTATTGGCCTT
TAAGATCCTGAAAATAgtaaggtgctggctagcaaagccaaaataatTAG
TATTTCTGAAAATGTCATTGTCATAATGCTGACATGACActttcttgtaa
aaatattgacaaaatctttaaatataaTGATTATCAAGGAAATTCCCCGA
AAAATATTAATCATACaggatataagttgacagtcatTTTAGCCTTATAA
AGTACGTAGAGTTAGCATATAGAGCTAGAAAAACAATGAcgctttctttt
gtcattttatcattttatcattaggattgacactttttataaaaattttg
atgaaactataaataaatggatatgaattgacagtagaaaatagctttcg
ATGCTCTCAACGCACGTGTTTCAGGGAAATGAGCATATAACGTGTTATAT
GTATTATACGTCttacatatattatatattactctcatattacatttact
ttcaaaatatacttttgatgtatgttactctttttcggtagccggtaatt
tttcaactccccaactcgcgactagaatagtttccaaactcATAAATAAC
CTATCCTAACTCGAACAACAAATCTAATTTGTTGGAACTACAGAGTTTGC
TATATAATCtattttcagaatcttcaaatattcaatgttttttttgtttt
tataaaactttcGGAATTCAAAAGTTAATGGCCAGATCACAAACACTGTA
TGCAAGTACTCCAAGTAAAAAAGTCATGGAAAATTGATTTCGTATAGACT
TCACAGCATAGTTCCTAGGGGAGTACTTTTTTCTGTAGGGGGTACATATT
TCCTAGGAGAAATGTACTTCCGGGAGTACTTTTATCCTAGGAAATAAGTA
TTGGGGAGTACTTAAAGCCATATTGACATTACTTTTTCCCGATGTCTGAA
TTGCTCCTTCAAAAACGCTGAGCTTGCACAAACGAGGCATTTCTCCgacc
aatcatcaaaacaaaaaagcgCGCTTAACGTCAGTTAATTGATCGATTCG
ACACTACAATGTCTTCTTTATGATAAAAGATTTTGACGACCAGATTGTTT
GCAatgttttgacttcaaaatgttgtacaagaattggaatgaaCCGTCTG
CGTTTTTAATGGAGTTTTGCAATGCTTTTGCAGAATAAGCAAACAGATCT
ATGGACAGATATACTGGCTTCAAATCTGGGAAATAAGTATTGGGGAGTAC
TTTTTTTCGGGGAGTACTTTTTTCCTGTGACACCGGAActcgtaaaaata
tttttcgtatcATGGTCGGAACCATgagataactattacatattctGTTC
TGTTCTGTTctataatctcatggttgattgaaattcgattgacgtttttg
cttacgttaatttgtaatttcccgcgNN Run BLAST on NCBI transcript from alignment at sc0000744:19143..22115+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029350 ID=TCONS_00029350|Name=TCONS_00029350|organism=Clytia hemisphaerica|type=transcript|length=2973bp|location=Sequence derived from alignment at sc0000744:19143..22115+ (Clytia hemisphaerica)
TTTAAGCTTGTTCAATTTACACCATCTGGAAATAGCAACATATTGCTAAG
ATTGCAGCCAATGAGAAGTATGAATAAAATTAGGCAAGTCACTTTGGATT
GGCTactttgctttcaaagtttgtaTTTTGCTTCGCCTTCAATATGGCTG
CCACCACCgtctatagaccttttcgccatTGATGACATTTTATATGCTAG
TAGCCATTTTTAGCCCGTTTCATCTTTCatatttcaaatcttttatttta
gaaattacaAAAACAAATTTACGTTGCAAATCTTCAAATAATGGGTAAAC
CATATGATGGATCAAGTCTTGATGATAACCATTCTTTATGGGAAGGTATA
TTTTGCCAGCTTTTGTATCTATTTTCATTAATTTGTACCTTCCTTGAAAC
TTATACCCTGTCTTGTTTTAAAAGTTAAACTATTTATTGAAGATTCTTTA
ATTATATTTTCAGAAATCGATAACCAGACGAATGCAGTGTTGGATAATAT
TATAATACAGTGGTGTGGCAGAGGGTATTTTCTTCTGTGTGTCATTCCGG
TTACAACAAGATAATATAACAATCGTTCGATTCTTTGAGCATGGTTCTTA
CAAAGGTGCGATGAAAAGGTAAATATAGTGCGTTCATTCTAACTTGGTTG
ATGTCTTTTTTAAAAACACTCAATTGTTTTCGatggttgaaagaaaagaa
ttCCACTTGAAAGTCATTAACGATTAACCAAGTTAGAGTGAACGCATTAT
AACGTTTTATTTAAATTCGATTTTTGTCGTCAGTGATAACTTGTGGCATG
ATAAATacatcttttatttttatatctttattcACAGAATTATATTCTGT
TTATTAGGGGAGATTTCTTTCTCGTATTGAATATTACTCATTAGTGTTCA
CAAAATGATCTGTAGGCAACGTATGCTAGACGACTTATTTCAGAAGAAAA
TAGGACGTCGAAAATAGCATCAGTATCTTgacaaacaaaaatgaaatttt
ttggcTTTCAATAAAAGCACTTTAAATAAACGACGTAGCAAGAACTTTAA
CATCGATGACGTCtcatttttcacattttcagtACGATGCAAGAGACCAT
TAACACTATGATCGAAGACGAAAACTCGCATTACATTGAAGTCTACAACT
ACATCGACCATGATGTGGAGAACAAATTAAAACGGGAATCTCTACTCAAA
ATGAAGAAAGGTGAAAAGACGAATATCGTTTCTAGACGTTTCCTTCGACT
AAAATGACAGAGTTATAACAACTTCGACGAACTTTAACAGTCCGTGATAC
GTAATTTCTTTCATCTTACAGCAAGTTGTTAGTCTTTTTGTAGATGGTGG
CTTTCATTTTTCGGGActtatgatatttttgaaatgtaCAATATTTACGA
CTTCCAACCCTGACCATAACTAAAATAACGAGTCTCGGTAATTttctagt
tggtgagttgggGAGGTGGGTAGTTGcaagtttcgagttggggagttgct
ataAAATTACGGCAACCGAAAACTATAGAGTTAAATTCATGTAgttcaaa
agtacaaatttcaaataagCCAGTACCAACCATATTATTGGCCTTTAAGA
TCCTGAAAATAgtaaggtgctggctagcaaagccaaaataatTAGTATTT
CTGAAAATGTCATTGTCATAATGCTGACATGACActttcttgtaaaaata
ttgacaaaatctttaaatataaTGATTATCAAGGAAATTCCCCGAAAAAT
ATTAATCATACaggatataagttgacagtcatTTTAGCCTTATAAAGTAC
GTAGAGTTAGCATATAGAGCTAGAAAAACAATGAcgctttcttttgtcat
tttatcattttatcattaggattgacactttttataaaaattttgatgaa
actataaataaatggatatgaattgacagtagaaaatagctttcgATGCT
CTCAACGCACGTGTTTCAGGGAAATGAGCATATAACGTGTTATATGTATT
ATACGTCttacatatattatatattactctcatattacatttactttcaa
aatatacttttgatgtatgttactctttttcggtagccggtaatttttca
actccccaactcgcgactagaatagtttccaaactcATAAATAACCTATC
CTAACTCGAACAACAAATCTAATTTGTTGGAACTACAGAGTTTGCTATAT
AATCtattttcagaatcttcaaatattcaatgttttttttgtttttataa
aactttcGGAATTCAAAAGTTAATGGCCAGATCACAAACACTGTATGCAA
GTACTCCAAGTAAAAAAGTCATGGAAAATTGATTTCGTATAGACTTCACA
GCATAGTTCCTAGGGGAGTACTTTTTTCTGTAGGGGGTACATATTTCCTA
GGAGAAATGTACTTCCGGGAGTACTTTTATCCTAGGAAATAAGTATTGGG
GAGTACTTAAAGCCATATTGACATTACTTTTTCCCGATGTCTGAATTGCT
CCTTCAAAAACGCTGAGCTTGCACAAACGAGGCATTTCTCCgaccaatca
tcaaaacaaaaaagcgCGCTTAACGTCAGTTAATTGATCGATTCGACACT
ACAATGTCTTCTTTATGATAAAAGATTTTGACGACCAGATTGTTTGCAat
gttttgacttcaaaatgttgtacaagaattggaatgaaCCGTCTGCGTTT
TTAATGGAGTTTTGCAATGCTTTTGCAGAATAAGCAAACAGATCTATGGA
CAGATATACTGGCTTCAAATCTGGGAAATAAGTATTGGGGAGTACTTTTT
TTCGGGGAGTACTTTTTTCCTGTGACACCGGAActcgtaaaaatattttt
cgtatcATGGTCGGAACCATgagataactattacatattctGTTCTGTTC
TGTTctataatctcatggttgattgaaattcgattgacgtttttgcttac
gttaatttgtaatttcccgcgNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029350-exon-sc0000744-1491911889:19143..19487 | TCONS_00029350-exon-sc0000744-1491911889:19143..19487 | Clytia hemisphaerica | exon |
| TCONS_00029350-exon-sc0000744-1510915933:19143..19487 | TCONS_00029350-exon-sc0000744-1510915933:19143..19487 | Clytia hemisphaerica | exon |
| TCONS_00029350-exon-sc0000744-1575043694:19143..19487 | TCONS_00029350-exon-sc0000744-1575043694:19143..19487 | Clytia hemisphaerica | exon |
| TCONS_00029350-exon-sc0000744-1491911889:19606..19747 | TCONS_00029350-exon-sc0000744-1491911889:19606..19747 | Clytia hemisphaerica | exon |
| TCONS_00029350-exon-sc0000744-1510915933:19606..19747 | TCONS_00029350-exon-sc0000744-1510915933:19606..19747 | Clytia hemisphaerica | exon |
| TCONS_00029350-exon-sc0000744-1575043694:19606..19747 | TCONS_00029350-exon-sc0000744-1575043694:19606..19747 | Clytia hemisphaerica | exon |
| TCONS_00029350-exon-sc0000744-1491911889:20225..22115 | TCONS_00029350-exon-sc0000744-1491911889:20225..22115 | Clytia hemisphaerica | exon |
| TCONS_00029350-exon-sc0000744-1510915933:20225..22115 | TCONS_00029350-exon-sc0000744-1510915933:20225..22115 | Clytia hemisphaerica | exon |
| TCONS_00029350-exon-sc0000744-1575043694:20225..22115 | TCONS_00029350-exon-sc0000744-1575043694:20225..22115 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000744 | supercontig | sc0000744:19143..22115 + |
Blast
The following BLAST results are available for this feature:
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