TCONS_00029251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029251
Unique NameTCONS_00029251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029251 ID=TCONS_00029251|Name=TCONS_00029251|organism=Clytia hemisphaerica|type=transcript|length=443bp
CAAAGATCACATCAAATTTTTGGACCGACGACTGAATCTTTGGGAGCAGG
GTGATTTTGACGAGCTGACAAGAGAATGCAGAGCTATCCAAAATCGAATT
CTCAGCTNTCATCGAAATCCAAAGATCACATCAAATTTTTGGACCGACGA
CTGAATCTTTGGGAGCAGGGTGATTTTGACGAGCTGACAAGAGAAAGCAG
AGCTATCCAAAATCGAATTCTCAGCTCCACCACCAAGAAGATATCCACGA
TCAAAAAACGATTTAGTGATCTGATGTTCCTTGGTAAAGTCAACGCTGCA
TTAAAACTCTTGTCAAATGAAAGCTCGACTGGTCTGGATCCGATCAATGA
CCAGATCATCAACGCACTTCAAGAGAAGCACCCACAAGCACAACCCAAAT
TTGACGATCTTATTCTTGAAGGTCCAGTGGTCGATGTTCATCC
Run BLAST on NCBI

protein sequence of TCONS_00029251-protein

>TCONS_00029251-protein ID=TCONS_00029251-protein|Name=TCONS_00029251-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MQSYPKSNSQXSSKSKDHIKFLDRRLNLWEQGDFDELTRESRAIQNRILS
STTKKISTIKKRFSDLMFLGKVNAALKLLSNESSTGLDPINDQIINALQE
KHPQAQPKFDDLILEGPVVDVH
Run BLAST on NCBI

transcript from alignment at sc0000731:82059..82501

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029251 ID=TCONS_00029251|Name=TCONS_00029251|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at sc0000731:82059..82501 (Clytia hemisphaerica)
GGATGAACATCGACCACTGGACCTTCAAGAATAAGATCGTCAAATTTGGG
TTGTGCTTGTGGGTGCTTCTCTTGAAGTGCGTTGATGATCTGGTCATTGA
TCGGATCCAGACCAGTCGAGCTTTCATTTGACAAGAGTTTTAATGCAGCG
TTGACTTTACCAAGGAACATCAGATCACTAAATCGTTTTTTGATCGTGGA
TATCTTCTTGGTGGTGGAGCTGAGAATTCGATTTTGGATAGCTCTGCTTT
CTCTTGTCAGCTCGTCAAAATCACCCTGCTCCCAAAGATTCAGTCGTCGG
TCCAAAAATTTGATGTGATCTTTGGATTTCGATGANAGCTGAGAATTCGA
TTTTGGATAGCTCTGCATTCTCTTGTCAGCTCGTCAAAATCACCCTGCTC
CCAAAGATTCAGTCGTCGGTCCAAAAATTTGATGTGATCTTTG

Coding sequence (CDS) from alignment at sc0000731:82059..82501

>TCONS_00029251 ID=TCONS_00029251|Name=TCONS_00029251|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000731:82059..82501 (Clytia hemisphaerica)
ATGAACATCGACCACTGGACCTTCAAGAATAAGATCGTCAAATTTGGGTT
GTGCTTGTGGGTGCTTCTCTTGAAGTGCGTTGATGATCTGGTCATTGATC
GGATCCAGACCAGTCGAGCTTTCATTTGACAAGAGTTTTAATGCAGCGTT
GACTTTACCAAGGAACATCAGATCACTAAATCGTTTTTTGATCGTGGATA
TCTTCTTGGTGGTGGAGCTGAGAATTCGATTTTGGATAGCTCTGCTTTCT
CTTGTCAGCTCGTCAAAATCACCCTGCTCCCAAAGATTCAGTCGTCGGTC
CAAAAATTTGATGTGATCTTTGGATTTCGATGANAGCTGAGAATTCGATT
TTGGATAGCTCTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016663XLOC_016663Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029251-proteinTCONS_00029251-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029251-exon-sc0000731-1491911889:82059..82501TCONS_00029251-exon-sc0000731-1491911889:82059..82501Clytia hemisphaericaexon
TCONS_00029251-exon-sc0000731-1510915933:82059..82501TCONS_00029251-exon-sc0000731-1510915933:82059..82501Clytia hemisphaericaexon
TCONS_00029251-exon-sc0000731-1575043694:82059..82501TCONS_00029251-exon-sc0000731-1575043694:82059..82501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000731supercontigsc0000731:82059..82501 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.758071	0.295696	0.343331	1.25759	0	0.161567	0.315807	0.364971	0.206025	0.158254	1.53606	0.460553	3.71591	1.77007	0.377841	0.277168	0	0.985947	5.84312	5.23647	0.293179	0.429007	0	0.739862	1.05975	0.581115	0.497363	0.295755	0	0.244483
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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