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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028901 ID=TCONS_00028901|Name=TCONS_00028901|organism=Clytia hemisphaerica|type=transcript|length=1893bp
CGACCTCAACGTAAGCACAATCTCGAATTAAAGAGGAATTTCGCTGAAGA
CGGCATTAGAGGATACCAAACGAATTCACTTTACTATAGAGGAGCATTGA
TACTTGGAACAGTTTGGCAACCAATGTTGTAAATGCACCGTCCGTAGGGA
GATTCAAactagaattgacaaacgaatggaatgacaaaatctataaattt
taaagatgtaagattgtatcatagaggtcaatagacctgagaaatacact
tctataaattaaattaaattaaattaaattgtttGTACTTAATTGCAATG
TCAAGATCTAAAAATAAAGCATTGTTATTTCTGTGTTGTTTCTTTAATTA
AAGTTCCGAAATTTCAGGTTTTCAGTGAAATGGACTTCACCAAGTTTGCT
ACAAGGCTCGATACAATAGATTGTTTAGATATATTGTCTTTTTCTTCTAC
TTCCCTGCAAATATTTTCCTTTTACGAAATCATCATTCTTGGGTTTTGAA
AGTGTTCCTTTCTCCAAATCAAGAAAAGCATCAATACCAAAGAAATAGCC
ATGAATGATGGACAAACATATAAAATATATTCGAAAGCGAATGCTGCAGT
GAACAAACCAAGGGTTGCTCCTAATCTGGAGAACATCAAACGAACGCTTT
CAGAAAATGCTTGAATCTTGGATGGAACCATTTGGGCCAAAACACTCATC
GTGAATAACTCATCAACAAAAACAATAGTAGACATCATAAAAGGATAGAT
AACCCATAATGCAATATTGATCCATTCTATGTTGTTAACCAAAcggaaat
acaaaaaaattccaaacgTGTAGCATGTTGCTACAAAACTCGCGATCCCA
ATATTGACCAACTGATTTTTCGATGGCGGTTTGAATACCAAGAACAAGCA
AATTGAAGTTATAATGATGCCATTGAGAATGAAAATGAGATTGATTTCCA
GAACTGTCCAATGTAATAACTTGATGACTGTCATAGATATCCATAGATCT
TGCAATAGTATTGTGATGTAAGCGAAAAATGCGAAAACAAAAATGAGAAC
GATGTCGATTGAAGAGAACAGCTTTATAAGAGTCTCCATTATTCCTAATT
GGTTCACTTCTGTTCCATTCTCGGAAGGGTCTTCACCCAACAAAGATTCG
TTATCGCAATTGTTTCTTTCAGAGAATATTTCGgatgaaacttttttatt
tgcACCACATAAACTATCTAATGGTAGTTTGTCAACATCTATCTTTTGTA
TTTCCTCCTTTAagtcaaattcttttgatagaTCACTTACAAAAAAGAGA
GACAAAGCAAACGCTACTAGGAATACGATTGATAACGCTAATCCAGCTCC
ATTAGCATAGCTGATCGGTATACCAAGTAGTGTAAATCTTGCTTTCACAA
AAGCAAAATTAATCGCCGGACCAAGTGTGATACCAATACCATAACTGACA
GTCATCGCCGTCATTTGTGCCATAATTTCATCACTAGGATATACCCTGGT
CAATTCAGATAATATAATTGGTCTCAGGCAGCCTCCAGCTCCGGAAAGGA
AACGTCCGGCTAACAAGAGATACGGCGAGTATGGGATTGCGTACAAAACA
TTTCCAACAAATGTTATAAATGTAACGAGAATAAAGAAAAGTTTCAATGT
TCTATATTTATCAAACAAATGGCATAAAACCAACGATGCAACAATCTGTG
CTGAAACATATATTCCACAGATACTGCTATAAAAAGCATTAAGGTTGTTT
GTGACGTGTAAAACGTCCTTTAAGTACAAGTACAATGTTGTAAAAGTCAT
CGAATATTCGAGCCCTAGTGCAAATTGAACAAAgacaaaaacttttgttg
ttgtttttcgcTTTTTGAGCCACTCTTTGTAGTTAAAATCAAC Run BLAST on NCBI protein sequence of TCONS_00028901-protein >TCONS_00028901-protein ID=TCONS_00028901-protein|Name=TCONS_00028901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
VDFNYKEWLKKRKTTTKVFVFVQFALGLEYSMTFTTLYLYLKDVLHVTNN
LNAFYSSICGIYVSAQIVASLVLCHLFDKYRTLKLFFILVTFITFVGNVL
YAIPYSPYLLLAGRFLSGAGGCLRPIILSELTRVYPSDEIMAQMTAMTVS
YGIGITLGPAINFAFVKARFTLLGIPISYANGAGLALSIVFLVAFALSLF
FVSDLSKEFDLKEEIQKIDVDKLPLDSLCGANKKVSSEIFSERNNCDNES
LLGEDPSENGTEVNQLGIMETLIKLFSSIDIVLIFVFAFFAYITILLQDL
WISMTVIKLLHWTVLEINLIFILNGIIITSICLFLVFKPPSKNQLVNIGI
ASFVATCYTFGIFLYFRLVNNIEWINIALWVIYPFMMSTIVFVDELFTMS
VLAQMVPSKIQAFSESVRLMFSRLGATLGLFTAAFAFEYILYVCPSFMAI
SLVLMLFLIWRKEHFQNPRMMIS Run BLAST on NCBI transcript from alignment at sc0000714:41160..43052 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028901 ID=TCONS_00028901|Name=TCONS_00028901|organism=Clytia hemisphaerica|type=transcript|length=1893bp|location=Sequence derived from alignment at sc0000714:41160..43052 (Clytia hemisphaerica)
GTTGATTTTAACTACAAAGAGTGGCTCAAAAAgcgaaaaacaacaacaaa
agtttttgtcTTTGTTCAATTTGCACTAGGGCTCGAATATTCGATGACTT
TTACAACATTGTACTTGTACTTAAAGGACGTTTTACACGTCACAAACAAC
CTTAATGCTTTTTATAGCAGTATCTGTGGAATATATGTTTCAGCACAGAT
TGTTGCATCGTTGGTTTTATGCCATTTGTTTGATAAATATAGAACATTGA
AACTTTTCTTTATTCTCGTTACATTTATAACATTTGTTGGAAATGTTTTG
TACGCAATCCCATACTCGCCGTATCTCTTGTTAGCCGGACGTTTCCTTTC
CGGAGCTGGAGGCTGCCTGAGACCAATTATATTATCTGAATTGACCAGGG
TATATCCTAGTGATGAAATTATGGCACAAATGACGGCGATGACTGTCAGT
TATGGTATTGGTATCACACTTGGTCCGGCGATTAATTTTGCTTTTGTGAA
AGCAAGATTTACACTACTTGGTATACCGATCAGCTATGCTAATGGAGCTG
GATTAGCGTTATCAATCGTATTCCTAGTAGCGTTTGCTTTGTCTCTCTTT
TTTGTAAGTGAtctatcaaaagaatttgactTAAAGGAGGAAATACAAAA
GATAGATGTTGACAAACTACCATTAGATAGTTTATGTGGTgcaaataaaa
aagtttcatcCGAAATATTCTCTGAAAGAAACAATTGCGATAACGAATCT
TTGTTGGGTGAAGACCCTTCCGAGAATGGAACAGAAGTGAACCAATTAGG
AATAATGGAGACTCTTATAAAGCTGTTCTCTTCAATCGACATCGTTCTCA
TTTTTGTTTTCGCATTTTTCGCTTACATCACAATACTATTGCAAGATCTA
TGGATATCTATGACAGTCATCAAGTTATTACATTGGACAGTTCTGGAAAT
CAATCTCATTTTCATTCTCAATGGCATCATTATAACTTCAATTTGCTTGT
TCTTGGTATTCAAACCGCCATCGAAAAATCAGTTGGTCAATATTGGGATC
GCGAGTTTTGTAGCAACATGCTACAcgtttggaatttttttgtatttccg
TTTGGTTAACAACATAGAATGGATCAATATTGCATTATGGGTTATCTATC
CTTTTATGATGTCTACTATTGTTTTTGTTGATGAGTTATTCACGATGAGT
GTTTTGGCCCAAATGGTTCCATCCAAGATTCAAGCATTTTCTGAAAGCGT
TCGTTTGATGTTCTCCAGATTAGGAGCAACCCTTGGTTTGTTCACTGCAG
CATTCGCTTTCGAATATATTTTATATGTTTGTCCATCATTCATGGCTATT
TCTTTGGTATTGATGCTTTTCTTGATTTGGAGAAAGGAACACTTTCAAAA
CCCAAGAATGATGATTTCGTAAAAGGAAAATATTTGCAGGGAAGTAGAAG
AAAAAGACAATATATCTAAACAATCTATTGTATCGAGCCTTGTAGCAAAC
TTGGTGAAGTCCATTTCACTGAAAACCTGAAATTTCGGAACTTTAATTAA
AGAAACAACACAGAAATAACAATGCTTTATTTTTAGATCTTGACATTGCA
ATTAAGTACaaacaatttaatttaatttaatttaatttatagaagtgtat
ttctcaggtctattgacctctatgatacaatcttacatctttaaaattta
tagattttgtcattccattcgtttgtcaattctagtTTGAATCTCCCTAC
GGACGGTGCATTTACAACATTGGTTGCCAAACTGTTCCAAGTATCAATGC
TCCTCTATAGTAAAGTGAATTCGTTTGGTATCCTCTAATGCCGTCTTCAG
CGAAATTCCTCTTTAATTCGAGATTGTGCTTACGTTGAGGTCG Coding sequence (CDS) from alignment at sc0000714:41160..43052 >TCONS_00028901 ID=TCONS_00028901|Name=TCONS_00028901|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0000714:41160..43052 (Clytia hemisphaerica)
GTTGATTTTAACTACAAAGAGTGGCTCAAAAAgcgaaaaacaacaacaaa
agtttttgtcTTTGTTCAATTTGCACTAGGGCTCGAATATTCGATGACTT
TTACAACATTGTACTTGTACTTAAAGGACGTTTTACACGTCACAAACAAC
CTTAATGCTTTTTATAGCAGTATCTGTGGAATATATGTTTCAGCACAGAT
TGTTGCATCGTTGGTTTTATGCCATTTGTTTGATAAATATAGAACATTGA
AACTTTTCTTTATTCTCGTTACATTTATAACATTTGTTGGAAATGTTTTG
TACGCAATCCCATACTCGCCGTATCTCTTGTTAGCCGGACGTTTCCTTTC
CGGAGCTGGAGGCTGCCTGAGACCAATTATATTATCTGAATTGACCAGGG
TATATCCTAGTGATGAAATTATGGCACAAATGACGGCGATGACTGTCAGT
TATGGTATTGGTATCACACTTGGTCCGGCGATTAATTTTGCTTTTGTGAA
AGCAAGATTTACACTACTTGGTATACCGATCAGCTATGCTAATGGAGCTG
GATTAGCGTTATCAATCGTATTCCTAGTAGCGTTTGCTTTGTCTCTCTTT
TTTGTAAGTGAtctatcaaaagaatttgactTAAAGGAGGAAATACAAAA
GATAGATGTTGACAAACTACCATTAGATAGTTTATGTGGTgcaaataaaa
aagtttcatcCGAAATATTCTCTGAAAGAAACAATTGCGATAACGAATCT
TTGTTGGGTGAAGACCCTTCCGAGAATGGAACAGAAGTGAACCAATTAGG
AATAATGGAGACTCTTATAAAGCTGTTCTCTTCAATCGACATCGTTCTCA
TTTTTGTTTTCGCATTTTTCGCTTACATCACAATACTATTGCAAGATCTA
TGGATATCTATGACAGTCATCAAGTTATTACATTGGACAGTTCTGGAAAT
CAATCTCATTTTCATTCTCAATGGCATCATTATAACTTCAATTTGCTTGT
TCTTGGTATTCAAACCGCCATCGAAAAATCAGTTGGTCAATATTGGGATC
GCGAGTTTTGTAGCAACATGCTACAcgtttggaatttttttgtatttccg
TTTGGTTAACAACATAGAATGGATCAATATTGCATTATGGGTTATCTATC
CTTTTATGATGTCTACTATTGTTTTTGTTGATGAGTTATTCACGATGAGT
GTTTTGGCCCAAATGGTTCCATCCAAGATTCAAGCATTTTCTGAAAGCGT
TCGTTTGATGTTCTCCAGATTAGGAGCAACCCTTGGTTTGTTCACTGCAG
CATTCGCTTTCGAATATATTTTATATGTTTGTCCATCATTCATGGCTATT
TCTTTGGTATTGATGCTTTTCTTGATTTGGAGAAAGGAACACTTTCAAAA
CCCAAGAATGATGATTTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028901-exon-sc0000714-1491911889:41160..43052 | TCONS_00028901-exon-sc0000714-1491911889:41160..43052 | Clytia hemisphaerica | exon |
| TCONS_00028901-exon-sc0000714-1510915933:41160..43052 | TCONS_00028901-exon-sc0000714-1510915933:41160..43052 | Clytia hemisphaerica | exon |
| TCONS_00028901-exon-sc0000714-1575043694:41160..43052 | TCONS_00028901-exon-sc0000714-1575043694:41160..43052 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000714 | supercontig | sc0000714:41160..43052 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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