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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028816 ID=TCONS_00028816|Name=TCONS_00028816|organism=Clytia hemisphaerica|type=transcript|length=2781bpRun BLAST on NCBI protein sequence of TCONS_00028816-protein >TCONS_00028816-protein ID=TCONS_00028816-protein|Name=TCONS_00028816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=848bp MQEEEEKQNTDSTSKTQIKSKDLDEEGFPDQQFQHLESKPSTEDLKEEQNRun BLAST on NCBI transcript from alignment at sc0000705:148871..162467- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028816 ID=TCONS_00028816|Name=TCONS_00028816|organism=Clytia hemisphaerica|type=transcript|length=13597bp|location=Sequence derived from alignment at sc0000705:148871..162467- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000705:148871..162467- >TCONS_00028816 ID=TCONS_00028816|Name=TCONS_00028816|organism=Clytia hemisphaerica|type=CDS|length=25440bp|location=Sequence derived from alignment at sc0000705:148871..162467- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028816 vs. Swiss-Prot (Human)
Match: CFA44 (Cilia- and flagella-associated protein 44 OS=Homo sapiens GN=CFAP44 PE=1 SV=1) HSP 1 Score: 397.512 bits (1020), Expect = 8.699e-122 Identity = 184/307 (59.93%), Postives = 231/307 (75.24%), Query Frame = 3
Query: 1860 DYELNDHLSKATTTPDIPPDFLTLFHSFGYECTKRWNLHMLSPDHIIFSAGNTFQILNLKTSEQINMRSTSGGGVGAIAVHPSRQYFAVSEKGVNPNIVIYQYPSLKLHRILRGGTEAAYSNLDFSPSGAKLASVGSYPDFMMTIWDWNKEQIVLRSKAFSQDVYKVAFSPEDEGHLCSSGTGHIKFWTMANTFTGLKLQGDLGRFGTTELSDISGFVELPDGKVLSGSEWGNMLLWDGGLIKAELTRKKKKTCHQGNIEQFFLDEGELITIGADGYVKVWDFESIDNADSLDESKLFEIEPMSELK 2780
DY + T +IP D LTL HSFGY+C KR NL +L I+ AGN LNLKT EQI +RS+SG G+G I VHP + YF V+EKG P+I+IY+YPSL+ +R+LR GTE Y+ +DF+ SG LASVGS PD+ +TIW+W +EQ +LR+KAFSQ+V+KV F+P+ E L +SG+GHIKFW MA TFTGLKLQG LGRFG T +DI G++ELPDGKVLSGSEWGNMLLW+GGLIK EL R K+CH G I Q L EGE+IT+G+DGYV++WDFE+ID AD +DE+ L EIEP++EL+
Sbjct: 112 DYMELASMPFVTLDSNIPLDLLTLVHSFGYDCRKRANLQLLDDSIAIYIAGNQLIFLNLKTKEQIYLRSSSGEGIGVIGVHPHKTYFTVAEKGSFPDIIIYEYPSLRPYRVLRDGTEKGYAYVDFNYSGNLLASVGSNPDYTLTIWNWKEEQPILRTKAFSQEVFKVTFNPDKEEQLTTSGSGHIKFWEMAFTFTGLKLQGSLGRFGKTITTDIEGYMELPDGKVLSGSEWGNMLLWEGGLIKVELCRGTSKSCHNGPINQIMLYEGEVITVGSDGYVRIWDFETIDTADVIDETGLLEIEPINELQ 418 The following BLAST results are available for this feature:
BLAST of TCONS_00028816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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