TCONS_00028542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028542
Unique NameTCONS_00028542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028542 ID=TCONS_00028542|Name=TCONS_00028542|organism=Clytia hemisphaerica|type=transcript|length=519bp
AAAAATATTAGTCAGAAACACCTCTATAGATACACTTCCTATATAGAtta
tataagaaacttttttccctAGTTAAAATATAGACTGCTGGGAAAGACTG
AGGACCCTAAATATGTACTAGCTACAACAGTGCAGAGAAAAGCACATCAT
CAGCTATACATGGTGTATCCTAGAAGGAGTAACACTAAATAGTGGCGGAG
TTAGAGGTGAGGACAGAGACATTTCGTGGTACATAAGTACTAGAACAGGG
AAGAAGATGCAATATCCCATTGATTAAGCTACGCACCTCCCAAAGTCGAA
TATTATCagttacacggtcttctcgatgtgggatacgggatatacaaggt
cagtaaaaaccgtattggtggcgaggcttgcCGAGATGTATAGATTCCTG
TAATTGCCTTATTAAACCAATAAGGAATGACTAACTGTAATAAAAATGCC
TTCAAACGTCAGTTTTATAAATTACTGGACACAGTCCCTGATGAACCTCT
TGTTTCAGGTTACACTGGC
Run BLAST on NCBI

transcript from alignment at sc0000690:132371..132889

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028542 ID=TCONS_00028542|Name=TCONS_00028542|organism=Clytia hemisphaerica|type=transcript|length=519bp|location=Sequence derived from alignment at sc0000690:132371..132889 (Clytia hemisphaerica)
GCCAGTGTAACCTGAAACAAGAGGTTCATCAGGGACTGTGTCCAGTAATT
TATAAAACTGACGTTTGAAGGCATTTTTATTACAGTTAGTCATTCCTTAT
TGGTTTAATAAGGCAATTACAGGAATCTATACATCTCGgcaagcctcgcc
accaatacggtttttactgaccttgtatatcccgtatcccacatcgagaa
gaccgtgtaactGATAATATTCGACTTTGGGAGGTGCGTAGCTTAATCAA
TGGGATATTGCATCTTCTTCCCTGTTCTAGTACTTATGTACCACGAAATG
TCTCTGTCCTCACCTCTAACTCCGCCACTATTTAGTGTTACTCCTTCTAG
GATACACCATGTATAGCTGATGATGTGCTTTTCTCTGCACTGTTGTAGCT
AGTACATATTTAGGGTCCTCAGTCTTTCCCAGCAGTCTATATTTTAACTa
gggaaaaaagtttcttatataaTCTATATAGGAAGTGTATCTATAGAGGT
GTTTCTGACTAATATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016179XLOC_016179Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028542-exon-sc0000690-1491911889:132371..132889TCONS_00028542-exon-sc0000690-1491911889:132371..132889Clytia hemisphaericaexon
TCONS_00028542-exon-sc0000690-1510915933:132371..132889TCONS_00028542-exon-sc0000690-1510915933:132371..132889Clytia hemisphaericaexon
TCONS_00028542-exon-sc0000690-1575043694:132371..132889TCONS_00028542-exon-sc0000690-1575043694:132371..132889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000690supercontigsc0000690:132371..132889 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.111601	0.12958	0	0	0.243915	0.147136	0.137747	0.38576	0	0.695685	0.228658	0.0761133	0.237133	0	0	0	0	0	0	0.110651	0	0	0	0.98299	0.328986	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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