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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028541 ID=TCONS_00028541|Name=TCONS_00028541|organism=Clytia hemisphaerica|type=transcript|length=1568bp
ttagcctgctaaaagactagtTAGTCAAAGggcaaatgtttcaagccaat
ccaagaagtatttgccCCTCTAAGCCTTTTtcttcatgtgaaaattctca
attttacgttttgatttgcgaaagtttatgctcgcgaaaaatatttttcc
gttaaattcgcgaaagtaaatgtcgtgaatttcgcgattttttgtcctcg
cgaaagtttctgctcgcgaaagtttgtacccCTAAAGTACATGCATATAA
ATCAAAtgagttttaataaaatctgttgggagttaatcaccatggcaata
atttcaaaacgaggcaaatgatgtttgtgacgttatttatgaaaaggtct
attgatatACATTTCTTGAAAGAAGACAAGATAGTATTATAGCAAAAATT
CTAATTATAAACAACAGGAACAtaagaatattcttataaaagtacTGGGT
AAGTCCTGATTTTTCCTTAGTTATTATACCAaatactcctcttgggattg
gttcaaaagttaatcacatgatcaataagtaagcaaaacaaactaacttc
TCAACCCGAGTTTCAAGTTCAAAACAATATCTTATCGCATATCGGCGAAA
ACTttgtcggccttaattttagttgGCCTTAATTATTATTCCGCCCttat
tttagtcacctcgtcaaaatttaatcACTAAGGGCCGattaataattaag
accgacaaaaaatttgggccatttctaaatAACTACAAGCAGATGGAAGA
TAGGAGAAAGCTTCTAATTTGACCCatatttttagtcggcccaaattttt
agtcgacCCTAATTTTAGttaccaagccaaaatttagtcgcCCATAAagt
agaaagaaacaaaagtcTTCAAAAATACCATATTGACTAAATNCCCATAA
agtagaaagaaacaaaagtcTTCAAAAATACCATATTGACTAAATAAATC
CAGTTTGTAGCAGTCTACTTCATTTTGATACCTTTTATAATAATGTTTAC
TACTGTAGCtcataaaactaaaaacaaaCTGGTGTTTTCGAGATGGTGAA
AGTTACCTCTCAGATAGAAAAGTTATCTCAATCAACAGTACAAGTGTTTC
AAGTACAATGCAAAACTCGCAAAACCTTGGGATTGCTGCTTAAGAAGCAA
TTTCTTTTCTACAATTTGGTTCCATCCATTCCATTGCTGGTAAAGAGCTG
GTGAAACGACACACGGTAGTGTTTGTTTCTCTCCTCCAAACTTGCCATAT
TTGTTAAATCACTTGGTATATTTTCCTAGCTACCATCAAAgacatcaaaa
tttctttacatacTGTAGTCCTTGTCTAACATAATTATCATCAGCAGCCA
CTCGCTTCTCCTCTGGATGGCAAGAAAAGTTTATAATGAAGTCTTTGTAA
AACAGGGTTTTATCCCACACGATTTCCTTCGAAATGTAGACACAATGTTG
ACTTTGTTCATTATTCATTACTATTTTTTCATTACAGCTAAAGCAAAATA
AGAAACCATAAATTTCTCATGCTCTATAATATAGCTATCACATTCAAATA
AATAGCTCATCGCagaaa Run BLAST on NCBI transcript from alignment at sc0000690:104918..106485 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028541 ID=TCONS_00028541|Name=TCONS_00028541|organism=Clytia hemisphaerica|type=transcript|length=1568bp|location=Sequence derived from alignment at sc0000690:104918..106485 (Clytia hemisphaerica)
tttctGCGATGAGCTATTTATTTGAATGTGATAGCTATATTATAGAGCAT
GAGAAATTTATGGTTTCTTATTTTGCTTTAGCTGTAATGAAAAAATAGTA
ATGAATAATGAACAAAGTCAACATTGTGTCTACATTTCGAAGGAAATCGT
GTGGGATAAAACCCTGTTTTACAAAGACTTCATTATAAACTTTTCTTGCC
ATCCAGAGGAGAAGCGAGTGGCTGCTGATGATAATTATGTTAGACAAGGA
CTACAgtatgtaaagaaattttgatgtcTTTGATGGTAGCTAGGAAAATA
TACCAAGTGATTTAACAAATATGGCAAGTTTGGAGGAGAGAAACAAACAC
TACCGTGTGTCGTTTCACCAGCTCTTTACCAGCAATGGAATGGATGGAAC
CAAATTGTAGAAAAGAAATTGCTTCTTAAGCAGCAATCCCAAGGTTTTGC
GAGTTTTGCATTGTACTTGAAACACTTGTACTGTTGATTGAGATAACTTT
TCTATCTGAGAGGTAACTTTCACCATCTCGAAAACACCAGtttgttttta
gttttatgaGCTACAGTAGTAAACATTATTATAAAAGGTATCAAAATGAA
GTAGACTGCTACAAACTGGATTTATTTAGTCAATATGGTATTTTTGAAga
cttttgtttctttctactTTATGGGNATTTAGTCAATATGGTATTTTTGA
AgacttttgtttctttctactTTATGGgcgactaaattttggcttggtaa
CTAAAATTAGGgtcgactaaaaatttgggccgactaaaaatatGGGTCAA
ATTAGAAGCTTTCTCCTATCTTCCATCTGCTTGTAGTTatttagaaatgg
cccaaattttttgtcggtcttaattattaatCGGCCCTTAGTgattaaat
tttgacgaggtgactaaaataaGGGCGGAATAATAATTAAGGCcaactaa
aattaaggccgacaaAGTTTTCGCCGATATGCGATAAGATATTGTTTTGA
ACTTGAAACTCGGGTTGAgaagttagtttgttttgcttacttattgatca
tgtgattaacttttgaaccaatcccaagaggagtattTGGTATAATAACT
AAGGAAAAATCAGGACTTACCCAgtacttttataagaatattcttaTGTT
CCTGTTGTTTATAATTAGAATTTTTGCTATAATACTATCTTGTCTTCTTT
CAAGAAATGTatatcaatagaccttttcataaataacgtcacaaacatca
tttgcctcgttttgaaattattgccatggtgattaactcccaacagattt
tattaaaactcaTTTGATTTATATGCATGTACTTTAGgggtacaaacttt
cgcgagcagaaactttcgcgaggacaaaaaatcgcgaaattcacgacatt
tactttcgcgaatttaacggaaaaatatttttcgcgagcataaactttcg
caaatcaaaacgtaaaattgagaattttcacatgaagaAAAAGGCTTAGA
GGggcaaatacttcttggattggcttgaaacatttgccCTTTGACTAact
agtcttttagcaggctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028541-exon-sc0000690-1491911889:104918..106485 | TCONS_00028541-exon-sc0000690-1491911889:104918..106485 | Clytia hemisphaerica | exon |
| TCONS_00028541-exon-sc0000690-1510915933:104918..106485 | TCONS_00028541-exon-sc0000690-1510915933:104918..106485 | Clytia hemisphaerica | exon |
| TCONS_00028541-exon-sc0000690-1575043694:104918..106485 | TCONS_00028541-exon-sc0000690-1575043694:104918..106485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000690 | supercontig | sc0000690:104918..106485 . |
Blast
The following BLAST results are available for this feature:
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