TCONS_00028522 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028522
Unique NameTCONS_00028522
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028522 ID=TCONS_00028522|Name=TCONS_00028522|organism=Clytia hemisphaerica|type=transcript|length=339bp
GCGGGACcggtattttcgaaaattttggacgggataacggtaattttcaa
aaaaatggccgggatggcggtaattcaaagcctcgtacgccccccacaaC
AAAATGGACGACGATCAAAAGTACAAGCTTCCCTCCATCGACGAAGAACG
TGAGAACTTCCTATACTCTCCGTTTCCATCTGAGAAGAGCATAAATCCAA
AGCATTGGGACAGTAAGCTAAACTTCTGGTCCAAGGAAGTCGTTGAAAGC
TGTAATTTTCAAGACGAAATCTGTGTTGATTGCAGGCGTTTGCAAGAAGT
TTTTAAAAGTGAGCGAACTGCTCGTAGTCCAAGaggtaa
Run BLAST on NCBI

transcript from alignment at sc0000683:181136..181474

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028522 ID=TCONS_00028522|Name=TCONS_00028522|organism=Clytia hemisphaerica|type=transcript|length=339bp|location=Sequence derived from alignment at sc0000683:181136..181474 (Clytia hemisphaerica)
ttacctCTTGGACTACGAGCAGTTCGCTCACTTTTAAAAACTTCTTGCAA
ACGCCTGCAATCAACACAGATTTCGTCTTGAAAATTACAGCTTTCAACGA
CTTCCTTGGACCAGAAGTTTAGCTTACTGTCCCAATGCTTTGGATTTATG
CTCTTCTCAGATGGAAACGGAGAGTATAGGAAGTTCTCACGTTCTTCGTC
GATGGAGGGAAGCTTGTACTTTTGATCGTCGTCCATTTTGttgtgggggg
cgtacgaggctttgaattaccgccatcccggccatttttttgaaaattac
cgttatcccgtccaaaattttcgaaaataccgGTCCCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016168XLOC_016168Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028522-exon-sc0000683-1491911889:181136..181474TCONS_00028522-exon-sc0000683-1491911889:181136..181474Clytia hemisphaericaexon
TCONS_00028522-exon-sc0000683-1510915933:181136..181474TCONS_00028522-exon-sc0000683-1510915933:181136..181474Clytia hemisphaericaexon
TCONS_00028522-exon-sc0000683-1575043694:181136..181474TCONS_00028522-exon-sc0000683-1575043694:181136..181474Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000683supercontigsc0000683:181136..181474 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74683	1.59674	2.08328	4.89465	6.75462	4.07146	6.31549	8.39876	4.22745	9.82469	6.47339	2.52381	5.20233	8.17653	0.661626	1.46384	0	1.33762	1.73826	0.402582	0.74409	0.386103	1.56453	2.50258	20.8634	13.8332	0.233616	1.19808	1.81741	1.26542
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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