TCONS_00028521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028521
Unique NameTCONS_00028521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length872

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028521 ID=TCONS_00028521|Name=TCONS_00028521|organism=Clytia hemisphaerica|type=transcript|length=872bp
GGTGACTCCTATCTTGCTGGCAATGATTTCATCCACATGAAAATTGAAAG
CTGTATTAATCCTCGCAAAAAACACCTTTCATGAACTTTGTGATGAGTGG
ATGCTCTCCTACAGAAGAAAACGACGGAAGGCAGTGCGAAATGGCTGACT
TTGCAATTTTGATAGCACTATATATATATGAGTTGTTATTCTCATATAAC
ATGAGGAAGTTTACTACATTGGTAGCCGATACTtcaatgatatttttttc
acaACAATATGCCTTTCCATCGTCTTGTGCAGCCCTCATTCTTTCTTGTG
GAATCTCTAATAGAGGCTGCAAGGATGGACTTACTCATATTTGTTAATTG
ATTAATCATGCcatcattttcaactttttccaaaGCGGGTGTATCTGGTT
TGTTGGAGGTAGTACAAGAAGATCTGTGAATAGTTGAAAAAACAATatct
ttaatgacttttttattaTACTTGGATACCATGGCTGTGTGGTTCAAACA
GGTGTAATGATAATTGCATGTGACCTGTCCCTTTCCACTTTAAATAGGAC
TTTCCCTACAAGACTAAAAGGAGGAAAGATatagaaaaattcatttttcc
aaTCACAGGAAAATGCATCTATCACTACAGCACCTGGGTCTGGTTTCAAT
GAGACATATTTGTCAAGTTGTTTATTTAAAGTAGAAGCAAATAGACCTCT
TCAATGATGATGTTAAACACACATTGGTACTAAGCATCCATTCAGTAGCC
TCATTAAACTTCTTAGATGTCGTGTCTGCTTCAGTGTTATCCAGACCTGG
GATAAAGGCTGCAGTAACCCAGTCGATCTGGCCTTACACCAGTTCCAAAT
GGATTTAGCAATAGTATTGCAT
Run BLAST on NCBI

transcript from alignment at sc0000683:156298..157169

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028521 ID=TCONS_00028521|Name=TCONS_00028521|organism=Clytia hemisphaerica|type=transcript|length=872bp|location=Sequence derived from alignment at sc0000683:156298..157169 (Clytia hemisphaerica)
ATGCAATACTATTGCTAAATCCATTTGGAACTGGTGTAAGGCCAGATCGA
CTGGGTTACTGCAGCCTTTATCCCAGGTCTGGATAACACTGAAGCAGACA
CGACATCTAAGAAGTTTAATGAGGCTACTGAATGGATGCTTAGTACCAAT
GTGTGTTTAACATCATCATTGAAGAGGTCTATTTGCTTCTACTTTAAATA
AACAACTTGACAAATATGTCTCATTGAAACCAGACCCAGGTGCTGTAGTG
ATAGATGCATTTTCCTGTGAttggaaaaatgaatttttctatATCTTTCC
TCCTTTTAGTCTTGTAGGGAAAGTCCTATTTAAAGTGGAAAGGGACAGGT
CACATGCAATTATCATTACACCTGTTTGAACCACACAGCCATGGTATCCA
AGTAtaataaaaaagtcattaaagatATTGTTTTTTCAACTATTCACAGA
TCTTCTTGTACTACCTCCAACAAACCAGATACACCCGCtttggaaaaagt
tgaaaatgatgGCATGATTAATCAATTAACAAATATGAGTAAGTCCATCC
TTGCAGCCTCTATTAGAGATTCCACAAGAAAGAATGAGGGCTGCACAAGA
CGATGGAAAGGCATATTGTtgtgaaaaaaatatcattgaAGTATCGGCTA
CCAATGTAGTAAACTTCCTCATGTTATATGAGAATAACAACTCATATATA
TATAGTGCTATCAAAATTGCAAAGTCAGCCATTTCGCACTGCCTTCCGTC
GTTTTCTTCTGTAGGAGAGCATCCACTCATCACAAAGTTCATGAAAGGTG
TTTTTTGCGAGGATTAATACAGCTTTCAATTTTCATGTGGATGAAATCAT
TGCCAGCAAGATAGGAGTCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016167XLOC_016167Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028521-exon-sc0000683-1491911889:156298..157169TCONS_00028521-exon-sc0000683-1491911889:156298..157169Clytia hemisphaericaexon
TCONS_00028521-exon-sc0000683-1510915933:156298..157169TCONS_00028521-exon-sc0000683-1510915933:156298..157169Clytia hemisphaericaexon
TCONS_00028521-exon-sc0000683-1575043694:156298..157169TCONS_00028521-exon-sc0000683-1575043694:156298..157169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000683supercontigsc0000683:156298..157169 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.214044	0.313089	0.424115	0.652033	0.432975	0.285119	0	0.38644	0.135278	0.0558545	0.216855	0.17819	0.427061	0.221754	0.303853	0.391297	0.0803409	0.494081	0.625716	0.41667	0.258687	0.151414	0.184064	0.11156	0.172357	0.205099	0.0733741	0	0.178179	0.121024
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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