TCONS_00066755-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066755-protein
Unique Name	TCONS_00066755-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1453

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066755-protein ID=TCONS_00066755-protein|Name=TCONS_00066755-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1453bp
MFGQTQLPAFGEPKPTQLGSQLPSETSQPLIPAAATKSTSFSFGAQSNTT
PLKHPPLQSTNPPKPMFSSNPAPDVIQPKPTAAFPSTTPVKPMFGGTQTE
SPVPSMNKNLFASPQQLVVSISSKPFPTQPQPIAATAFVQTPQIPKQAPA
PVKPSFAPVPDNRIPSPVIPPNKMAPPPAYQATPLLHQPVAGGIHQKREQ
DILSQTEKLDTALQNHINEEINSFNEELEAFTKAFSSVTERKDLIGSQEE
MESLTNGINSFSAHIDEYKTNMEENKTESKELRNGVLSNFQNIDEALLRK
EKTEDRRYTNVLKSRQLDPVSARQRKELRAQTNHLENLLGEINVALDTEW
KENQIRMNKNRQKRAPGAHQNQQIYKTIEAIEKITNNLSNRIKGISLESE
ESHLITMNTTRLNSQMSEKNSTSSTTVTSSKDSTMKMNQLREMLSRRGNT
PVRKSKQYSYPDISLASSSSSVLPTPHNKLNPKATSTPAVDQSFFSPKSD
GAFTNKMQTLSEEGNYAKAAAQKLREQQSSSAFTPKVTPLLPKAPENTPV
TPVVPQVLRHQPPELATPDRAPSITKNLFGQTSTMSAQKDKEPVFSSSSS
FKGFVPQNQSQQPVESSSKPLSFVGIAPKPTTDSPAKSLTSFGGFGQQQT
STGFGNTKPAGGFSFGTPASSAAPSQPKNESSFKGFGVSSNTTTTASSSK
PAFSLTPSLSKEDSQPSAVTTSASLPSMSATFASKSSVAATSSSSFGFGA
GSSASTSFAAPNSNATTPSLFGAPPSSNIPSVASDQKPAATVVSSPSVSS
LFGSKPPATAQVKPSPGGLFGSVATSISGESKAEEITSTPGGLFAPTGGL
FGTPKTGGLFGSSPATVSSAPPVSSAPPTSSTSPVIAKPSTAADPTSTFQ
LGTNSTSTTGGAFSFGKSTTIPATSTSGGLFGTPKSEATSSSTTTGFSFG
ASTSSTSTAGFTLKSSETSTTVATSTSSTGGLFGSTTSTSTSGGLFGTPT
TKATTLESSAKPSEGLFGSSATTNTATGGLFGSTSTSSSGGLFGSSTITT
TTSSGSFFGGLSAKESPFGTASATTSSSNGGGLFGNSTATTTSSSAGGMF
GSSTTKSSSGLFGSTATPSSSSGGLFGSSATTSSSSGGLFGSTTSSSSSS
GGLFGSSTTATSTTSGGLFGSSPASSGGLFGNAAKATASTGLFGSTSTTT
STSGGGLFGSTTASNSPFGGASASGGFGSTNKSNQESSGASSSGGFGGGF
GLGGKPINDPNKNPFGSTPAANVANTSSNLWFGGSTTSTFGTQSGQSGQS
GGGSFSKGFGAGLSSPQNSNSTFGGGNSGSGSFGSTQAAFGGTPAFGSAP
TFGSPSGGGFGAAPVFGSGPTFGGSPPKPTFGANAPTFGSTANMGGGSTF
GSNSAVFGGSGGASFGSLANQSGNAPTFGGQQSGATSFGSINQQASGNSS
TSP

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041748	XLOC_041748	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066755	TCONS_00066755	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR025574	Nucleoporin_FG_rpt

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 265..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 583..723
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1413..1453
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 412..433
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 862..905
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 796..818
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 831..850
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1107..1128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1222..1271
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1285..1336
IPR025574	Nucleoporin FG repeat	PFAM	PF13634	Nucleoporin_FG	coord: 1098..1181 e-value: 9.2E-12 score: 45.5 coord: 849..950 e-value: 7.3 score: 7.4 coord: 974..1059 e-value: 0.12 score: 13.2

Blast

[Close]

BLAST of TCONS_00066755-protein vs. Swiss-Prot (Human)
Match: NU214 (Nuclear pore complex protein Nup214 OS=Homo sapiens GN=NUP214 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 8.761e-24
Identity = 83/342 (24.27%), Postives = 137/342 (40.06%), Query Frame = 0

Query:  150 APVKPSFAPVPDNR--------IPSPVIPPNKMAPPPAYQATPLLH--QPVAGGI--HQKREQDILSQTEKLDTALQNHINEEINSFNEELEAFTKAFSSVTERKDLIGSQEEMESLTNGINSFSAHIDEYKTNMEENKTESKELRNGVLSNFQNIDEALLRKEKTEDRRYTNVLKSRQLDPVSARQRKELRAQTNHLENLLGEINVALDTEWKENQIRMNKNRQKRAPGAHQNQQIYKTIEAIEKITNNLSNRIKGI--------------------------SLESEESHLITMNTTRLNSQMSEKNSTSSTTVTSSKDSTMKMNQLREMLSRRGNTPVR 453
             P+K S  P P  R        +PS V    ++ PP A   +P     QP       HQ ++ D           +   I EEI  F +ELE      S    +   +G+ EEM+ L    +     + E K   E    +   L+  +L  F  ++EA  + E+  D  Y ++L  R LDP S  Q +E+R    +++  + ++N  LD EW ++  +  K R    P   + + ++ T+    +I N    R+  +                          S+ S +S L ++    L + +  ++ T S     +K S MK  QLR  L++R   PVR
Sbjct:  637 VPLKSSVLPSPSGRSAQGSSSPVPSMVQKSPRITPPAAKPGSPQAKSLQPAVAEKQGHQWKDSD----------PVMAGIGEEIAHFQKELEELKARTSKACFQ---VGTSEEMKMLRTESDDLHTFLLEIKETTESLHGDISSLKTTLLEGFAGVEEAREQNERNRDSGYLHLLYKRPLDPKSEAQLQEIRRLHQYVKFAVQDVNDVLDLEWDQHLEQKKKQRHLLVP---ERETLFNTLANNREIINQQRKRLNHLVDSLQQLRLYKQTSLWSLSSAVPSQSSIHSFDSDLESLCNALLKTTI--ESHTKSLPKVPAKLSPMKQAQLRNFLAKRKTPPVR 960

The following BLAST results are available for this feature:

BLAST of TCONS_00066755-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066755-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NU214	8.761e-24	24.27	Nuclear pore complex protein Nup214 OS=Homo sapien...	[more]

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TCONS_00066755-protein (polypeptide) - C. hemisphaerica