TCONS_00065894-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065894-protein
Unique NameTCONS_00065894-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length160

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065894-protein ID=TCONS_00065894-protein|Name=TCONS_00065894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MPGGRGRGRGAQAGGGAGRRGVGLRNGMTVLNVAEKNDAAKRLSQLMSRG
NSQRREGFSKFNKIYEFDYNLLNYNCKMVMTSVSGHLMTMDFSSVYRNWK
NIDPAQLFQAPVSRFVPDNFIDIKRTLEREIRKSQVLVIWTDGDREGENI
GFEIIECCQN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041291XLOC_041291Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065894TCONS_00065894Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006171TOPRIM_domain
IPR034144TOPRIM_TopoIII
IPR023405Topo_IA_core_domain
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006171TOPRIM domainSMARTSM00493toprim5coord: 29..160
e-value: 1.7E-8
score: 44.2
IPR006171TOPRIM domainPFAMPF01751Toprimcoord: 31..159
e-value: 1.2E-13
score: 51.1
IPR006171TOPRIM domainPROSITEPS50880TOPRIMcoord: 29..160
score: 16.903
NoneNo IPR availableGENE3D3.40.50.140coord: 28..160
e-value: 3.8E-35
score: 121.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
IPR034144DNA topoisomerase 3-like, TOPRIM domainCDDcd03362TOPRIM_TopoIA_TopoIIIcoord: 29..158
e-value: 2.02282E-37
score: 126.194
IPR023405DNA topoisomerase, type IA, core domainSUPERFAMILY56712Prokaryotic type I DNA topoisomerasecoord: 28..159

Blast
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BLAST of TCONS_00065894-protein vs. Swiss-Prot (Human)
Match: TOP3A (DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.647e-53
Identity = 83/138 (60.14%), Postives = 103/138 (74.64%), Query Frame = 0 
Query:   22 VGLRNGMTVLNVAEKNDAAKRLSQLMSRGNSQRREGFSKFNKIYEFDYNLLNYNCKMVMTSVSGHLMTMDFSSVYRNWKNIDPAQLFQAPVSRFVPDNFIDIKRTLEREIRKSQVLVIWTDGDREGENIGFEIIECCQ 159
            + LR    VL VAEKNDAAK ++ L+S G  +RREG SKFNKIYEFDY+L   N  MVMTSVSGHL+  DF   +R W++ +P  LF+A + ++ P+NF+DIK+TLERE R+ Q LVIWTD DREGENIGFEII  C+
Sbjct:   28 MALRGVRKVLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK 165
The following BLAST results are available for this feature:
BLAST of TCONS_00065894-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TOP3A4.647e-5360.14DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A... [more]
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