TCONS_00028372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028372
Unique NameTCONS_00028372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028372 ID=TCONS_00028372|Name=TCONS_00028372|organism=Clytia hemisphaerica|type=transcript|length=2610bp
CTCTTTTGTAACGATGCTAACATGACCATGTTCTTCAACAAGACGGCCTT
GGATGAAAGATTTTACAAGGATGGCACGAACAATAGACCATACCGTATTT
ATTACGATGGCTACCGAAACGTTAAAGGATGCTACATGGACAAATCTTTC
GATCGTAACATTGTCCCACAATCTGATTACGACAAGAAATATGAAGGTGT
CAACATGACATTGTTCAACAACACGTGGTGTAGCAAAGAATTTGAAAACG
GATTCTACATGGAACATAAAAGATGTATCTCCTTTATCCGTACTTTCAAT
GAATCGTGGTGTAAGGAGAGCTTTATGGATGGTATGTTTGTTAACCACAC
GTGGTGTCAATACAACTTCTCTCAAATCAATTACACCTGGTGTGAAAAGG
ATTACCAAAATGGTGCATTCCGCGATCACCCTCGATGCCAAGACTATGCC
AAACTTGATTTCAAAAACTTCGAAGTCAGAATTTGGTGCGTAGAAGATTT
TCATGATAATCTTCTTGGTGGAAGAGATCTTCATCCATTCTGTGTGTCTT
ACATGGCAAACATCACAGCTAGCTGGTGCAAAAAAGATTACCAATACAAG
GACTACAAAGTTGGCGTGTTTTACGATCATCCAAGATGTCACTTACTCAG
AAGTTACAAATTGGAAGAATTCGAAGAAACTTGGTGTAATGAGACATTTG
AGGATGGGCTATTCAAAGATCACCATTTCTGCCAAGTTAATTTCACTGAC
GTCAACTCAACATGGTGTAACAAGAGCTATCGAGATGGTGAATTCATGGA
ACATCCAAAATGTCATACATGGTTAAACTTCGATCCTACCACCTTTAAAG
AATCGATGTGCAACACTAGTTATTTTGATGGACTTTTCATGGAACATGTT
TTCTGCCGatacaacaacagcaacatcaATGCTTCTTTCTGTTCCAACCA
CTTCGAAGAAGGAATGTTTTTGAAACATCCATTCTGCATTCGACTTTACA
ATGACTACGATTTCTACAATTTCAACTACAGCGTAATGTGTAACTCTTCT
ATCTCTAATGATAAAACTTTCCTCGAACATGCTTTATGTACGAGGAACTT
CTCCGCCTACAATATCACCGCATTCAACAAAAAATGGTGCTCAAGCAAAT
ACGAGAACGGCATTTTCCTTGAACATCCATTTTGCCAACAACTTTTTGTT
AGAACCAATTTCGACAACTTTGAATACTTATGGTGCTCCATGGATTACGA
GGATGGAATCTATCTTGAACACCCAAAATGCAAAGATGTCAAAGCAAATC
AAACCACATTTTACCGTGTGCAGAACGAGGCACGTTTCGATGACAGCGTT
TTCTTAGCTTCCCCATACGACCGATGTGGAATCAATGTCTATTCCGACGA
CGCTTTCATCACATTCAACCAAACCATCGTTATTGTCTATGGAGATGATA
GTCCCAACGATAACAACCTTATCCAACGTGAAGAGAAAGATTATTATAAT
TTCATGTGCCAAAGAAATCGTACCATTGTTGAGAAATTGTTCGGTGGCGG
CTACTTCAATACCACATTCAGACAAGAAGGACGAAGAGAGGACaATGCTA
CACGTGCTTTCGAGCTTTCATTGAGCCACGCCAACATGGAGGACCAAAGA
CAAGATATCTACCAATTGGGAGACTACATGAAATTCCGATTAAAATCACA
CACTTCATACGAAAATGTCAAAGCTGTTGTTCAACAATGTTGGACTACCT
CCGATGGATACAATGACAAGAAATACATGCTCATCGATAACAGATGCACC
CATGACCAAAACACTTTCTGGATGGTCCAAAACCGTTCCATGTCCGAATT
CAAAGTTGAAGCTTTCCGATACCTTGGTGCTGTCCGAAATGCCATCTACA
TGGAATGTCACGTCCGTATGTGTATTATGGGTGATATGAGCTCTCAGTGT
GACTTCTGTGACGATAAGGAGAATGCGAGAAACAGACGTTCAGCTGATGA
AGAAGAAAGCAAAGAGAATGTGCAAACCGTTAAATCGCCAGTCTTCTACA
TCATCGAACGACCACAAGCACCTGTACCAGTCCAAGAAAACTCATCAGCT
TTTACTGGTACCAATGGAACCATTGTCATTATTCTCCTCTCAGCTATGGT
CTTTATTGGTTTCGTCTTGATTATCAAGAAATTCTTCTTCACACCAACAA
CTCTCCAAAACAAAGCCATGTTGTTGGAACGAGCATAAGCAATGAATTCA
AGCCTTGATTCATGGAGCTGGCATACGAAGGGAGGTTTTGCTTACAGGGT
TTTCAAGAGAAATTAGATTAATTACCAATGCAGTCATTGACTATTTTTCT
CTTTGTAAACTTTGTACAGTTATAACTTATTAGAGTGATATTCTTTTTCG
AATATATAATTTCGTAAATATCAACATCATATCATCAAGTACAGCGATAG
AGAGATTGTAAAATAGTGAAATTACCAAtttttcaatgtgaaaaaaccAT
TATTTAATGTAGGATTTAATTGTAGGAAATTTTATAATATCTTTCAATAT
AATTTGTAGTATTAATTGTAAAATCGAATTATCATACGATTACATTAggt
taactaaaac
Run BLAST on NCBI

transcript from alignment at sc0000675:141762..148043+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028372 ID=TCONS_00028372|Name=TCONS_00028372|organism=Clytia hemisphaerica|type=transcript|length=6282bp|location=Sequence derived from alignment at sc0000675:141762..148043+ (Clytia hemisphaerica)
CTCTTTTGTAACGATGCTAACATGACCATGTTCTTCAACAAGACGGCCTT
GGATGAAAGATTTTACAAGGATGGCACGAACAATAGACCATACCGTATTT
ATTACGATGGCTACCGAAACGTTAAAGGATGCTACATGGACAAATCTTTC
GATCGTAACATTGTCCCACAATCTGATTACGACAAGGTATAATTACGAAA
TCTTTAAGCACTAtctttgcttttttattttaaagtcaCTTTCTAAATTT
AACAATGAAATGACCACTTCTAGATAGGGCTTTGAGGTCTTCCAACGCCA
AAAACGTTGGTACGACTTATTTTTAAACATCTACGCTGCTTTCTCAccca
aatatcaaaatcaaaaactcttctACACACAATGGACAGGATCAATAAAA
TTGTCTACCCTTTCAAGATTTCGAGGAATAAGGCCAtgcaagaaaaataa
taataccaTATCTCTAATTTAGAAATATCATCAACAAAAAAACAACTAGT
GCATTTTCTTCAGTACTTCATGTCTTTAAACGACAATCATCAGCTGCTAA
ATGCagtagttgtttttttttcttgatgaTATGAAACTCCCTCGGTTAAG
AGTACTTTTATAAGTAAACATTTAAGCTGAGCAACTTGATCTAATTTAGA
AATATGAAGGTGTCAACATGACATTGTTCAACAACACGTGGTGTAGCAAA
GAATTTGAAAACGGATTCTACATGGAACATAAAAGATGTATCTCCTTTAT
CCGTACTTTCAATGAATCGTGGTGTAAGGAGAGCTTTATGGATGGTATGT
TTGTTAACCACACGTGGTGTCAATACAACTTCTCTCAAATCAATTACACC
TGGTGTGAAAAGGATTACCAAAATGGTGCATTCCGCGATCACCCTCGATG
CCAAGACTATGCCAAACTTGATTTCAAAAACTTCGAAGTCAGAATTTGGT
GCGTAGAAGATTTTCATGATAATCTTCTTGGTGGAAGAGATCTTCATCCA
TTCTGTGTGTCTTACATGGCAAACATCACAGCTAGCTGGTGCAAAAAAGA
TTACCAATACAAGGACTACAAAGTTGGCGTGTTTTACGATCATCCAAGAT
GTCACTTACTCAGAAGTTACAAATTGGAAGAATTCGAAGAAACTTGGTGT
AATGAGACATTTGAGGATGGGCTATTCAAAGATCACCATTTCTGCCAAGT
TAATTTCACTGACGTCAACTCAACATGGTGTAACAAGAGCTATCGAGATG
GTGAATTCATGGAACATCCAAAATGTCATACATGGTTAAACTTCGATCCT
ACCACCTTTAAAGAATCGATGTGCAACACTAGTTATTTTGATGGACTTTT
CATGGAACATGTTTTCTGCCGatacaacaacagcaacatcaATGCTTCTT
TCTGTTCCAACCACTTCGAAGAAGGTATGAGAAAAATTAGTCAGGACTTT
TGTGTCAGCAAGCGTATAATTAACATTCTATGTTTCTGCAACTTGAGACA
TCAGATCTCCAGAACTTTACCTAGATGTTAGCCTGATTGAGATTGAGCTT
CAAAATTCTGTATATTTTACATCTAAACTTGTGCTTTGGAATAATGATTT
TAAAGTATACAAGCGATCTTAATCACCTTAATCACATTGTAAAAGTTATT
TCCTGATTCACACACTGCgagcgatggccgagtggtcaaaggcgtcagcg
tcttaAACCAGGGGTTCGCAGTTCAAATCCCCAaaccttccaatgttccg
ttcagttcaaaTATCCGAGcaggctggccgtggaccccgtgaaaataatc
aaaagactgcttaaaagtcctagattacttggccatccacgtaaaatatc
gactctatctatatCTCTTGTAAACCTTTTATTCTCAAAGAGCTAAGCAA
TGAATTCAAAATCTTTGGATTCTCTTAACTGGATGAAATAACAGGAagaa
attttcttctttatcttcCAGGAATGTTTTTGAAACATCCATTCTGCATT
CGACTTTACAATGACTACGATTTCTACAATTTCAACTACAGCGTAATGTG
TAACTCTTCTATCTCTAATGATAAAACTTTCCTCGAACATGCTTTATGTA
CGAGGAACTTCTCCGCCTACAATATCACCGCATTCAACAAAAAATGGTGC
TCAAGCAAATACGAGAACGGCATTTTCCTTGAACATCCATTTTGCCAACA
ACTTTTTGTTAGAACCAATTTCGACAACTTTGAATACTTATGGTGCTCCA
TGGATTACGAGGATGGAATCTATCTTGAACACCCAAAATGCAAAGATGTC
AAAGCAAATCAAACCACATTTTACCGTGTGCAGAACGAGGCACGTTTCGA
TGACAGCGTTTTCTTAGCTTCCCCATACGACCGATGTGGAATCAATGTCT
ATTCCGACGACGCTTTCATCACATTCAACCAAACCATCGTTATTGTCTAT
GGAGATGATAGTCCCAACGATAACAACCTTATCCAACGTGAAGAGAAAGA
TTATTATAATTTCATGTGCCAAAGAAATCGTACCATTGTTGAGAAATTGT
TCGGTGGCGGCTACTTCAATACCACATTCAGACAAGAAGGACGAAGAGAG
GACagtgagttgattttatttttgattttgaaagacTCAACGTTattaaa
tttcaaacttttaaaatgaaaaactttagTCATTGAAATTTGAGTAAATG
ATAAACTCATTCTTTTTACCATAGATGCTACACGTGCTTTCGAGCTTTCA
TTGAGCCACGCCAACATGGAGGACCAAAGACAAGATATCTACCAATTGGG
AGACTACATGAAATTCCGATTAAAATCACACACTTCATACGAAAATGTCA
AAGCTGTTGTTCAACAATGTTGGACTACCTCCGATGGATACAATGACAAG
AAATACATGCTCATCGATAACAGGTTAGCATAAGAAATATGAATTCAGGA
ACATTTGACAATTTGTTGACCCTATTATTTTTCTGCACTAGCCCCAAGCG
ACAACCCTCTAATCACCCCCGAAGCGACAACCCTCGTCGTAACATCACGC
CAATTATTTTGttctcatcatcatcatcatcatcatNAAGCGACAACCCT
CTAATCACCCCCGAAGCGACAACCCTCGTCGTAACATCACGCCAATTATT
TTGttctcatcatcatcatcatcatcatcattaatCTGTACCAGACTCCT
CTTCGCTGACTGAAAAAATAACGCAACGTTCGACCTGGCGGTGAGGTGGT
ACAGGCTGTCATCATCATCACAAAAATCGCATAAAATGCATAAAACGGTT
TATTCATCACATATAGTCATAGATAGCGATAATTTGCCCAAATCACCCCT
CAAATTCTNATTCTCAAAGAGCTAAGCAATGAATTCAAAATCTTTGGATT
CTCTTAACTGGATGAAATAACAGGAagaaattttcttctttatcttcCAG
GAATGTTTTTGAAACATCCATTCTGCATTCGACTTTACAATGACTACGAT
TTCTACAATTTCAACTACAGCGTAATGTGTAACTCTTCTATCTCTAATGA
TAAAACTTTCCTCGAACATGCTTTATGTACGAGGAACTTCTCCGCCTACA
ATATCACCGCATTCAACAAAAAATGGTGCTCAAGCAAATACGAGAACGGC
ATTTTCCTTGAACATCCATTTTGCCAACAACTTTTTGTTAGAACCAATTT
CGACAACTTTGAATACTTATGGTGCTCCATGGATTACGAGGATGGAATCT
ATCTTGAACACCCAAAATGCAAAGATGTCAAAGCAAATCAAACCACATTT
TACCGTGTGCAGAACGAGGCACGTTTCGATGACAGCGTTTTCTTAGCTTC
CCCATACGACCGATGTGGAATCAATGTCTATTCCGACGACGCTTTCATCA
CATTCAACCAAACCATCGTTATTGTCTATGGAGATGATAGTCCCAACGAT
AACAACCTTATCCAACGTGAAGAGAAAGATTATTATAATTTCATGTGCCA
AAGAAATCGTACCATTGTTGAGAAATTGTTCGGTGGCGGCTACTTCAATA
CCACATTCAGACAAGAAGGACGAAGAGAGGACagtgagttgattttattt
ttgattttgaaagacTCAACGTTattaaatttcaaacttttaaaatgaaa
aactttagTCATTGAAATTTGAGTAAATGATAAACTCATTCTTTTTACCA
TAGATGCTACACGTGCTTTCGAGCTTTCATTGAGCCACGCCAACATGGAG
GACCAAAGACAAGATATCTACCAATTGGGAGACTACATGAAATTCCGATT
AAAATCACACACTTCATACGAAAATGTCAAAGCTGTTGTTCAACAATGTT
GGACTACCTCCGATGGATACAATGACAAGAAATACATGCTCATCGATAAC
AGGTTAGCATAAGAAATATGAATTCAGGAACATTTGACAATTTGTTGACC
CTATTATTTTTCTGCACTAGCCCCAAGCGACAACCCTCTAATCACCCCCG
AAGCGACAACCCTCGTCGTAACATCACGCCAATTATTTTGttctcatcat
catcatcatcatcattaatCTGTACCAGACTCCTCTTCGCTGACTGAAAA
AATAACGCAACGTTCGACCTGGCGGTGAGGCTGTCATCATCATCACAAAA
ATCGCATAAAATGCATAAAACGGTTTATTCATCACGTATAGTCATAGATA
GCGATAATTTGCCCAAATCACGCTATCACCCCTCAAATTCTAACCTAAGA
TGCGCGTGACGAAAAAATTGAATCACGCCATTACTTAAGCCCCAATCAGT
TCCTCAAGCAAACTGCTGGGAGTCTCTTTAATCGAACCCATAAATATCTT
ATCTATAGAGCAGATTACGACCTTACTAGATAGAGGGcagagaaaaaaga
taataaaaaagTCACAAGAAACTTACTTATAGGCACGCTACGTCTTATGG
ACATTCAATGTACGGCTTTAAGATCTTTGCacgtcctagaaacgtacatt
agacgtccaaaagacgtttgtgcCCATTGGGTTACTTATCTATTTGTCAT
GTTTTCCACAGATGCACCCATGACCAAAACACTTTCTGGATGGTCCAAAA
CCGTTCCATGTCCGAATTCAAAGTTGAAGCTTTCCGATACCTTGGTGCTG
TCCGAAATGCCATCTACATGGAATGTCACGTCCGTATGTGTATTATGGGT
GATATGAGCTCTCAGTGTGACTTCTGTGACGATAAGGAGAATGCGAGAAA
CAGACGTTCAGCTGATGAAGAAGAAAGCAAAGAGAATGTGCAAACCGTTA
AATCGCCAGTCTTCTACATCATCGAACGACGTAAGTCTTACTTAAGTTTT
CTTTTGTACGTTTTTTTGTTGGCGAGCATACGGCTAGTATTCTATGTTAA
TGCTAATGTTAATTtaaggagcgatggccaagtggtcaaaggcgaaATCC
TCTTAAACCAGTGGTTCGCAGTTCGAATcctccccgctccttccaatgtt
cctttcagttcatagatagcccaTACTGGCTATGGACcctgtgaaaacaa
tcgaaagactgcctaaaagtcctagattactagGCTATTCACGTAAGATG
TCGACTCGATCTAATGCAGATTTCCAGCAGTTTACGTAAAACCTTGACCT
GTTGGGGATGGGTAAAGTGACTAACAGTCCAAAAAATCACTACATTAAAC
TATttaaacaaagaaattcattcattttatttAGCACAAGCACCTGTACC
AGTCCAAGAAAACTCATCAGCTTTTACTGGTACCAATGGAACCATTGTCA
TTATTCTCCTCTCAGCTATGGTCTTTATTGGTTTCGTCTTGATTATCAAG
AAATTCTTCTTCACACCAACAACTCTCCAAAACAAAGCCATGTTGTTGGA
ACGAGCATAAGCAATGAATTCAAGCCTTGATTCATGGAGCTGGCATACGA
AGGGAGGTTTTGCTTACAGGGTTTTCAAGAGAAATTAGATTAATTACCAA
TGCAGTCATTGACTATTTTTCTCTTTGTAAACTTTGTACAGTTATAACTT
ATTAGAGTGATATTCTTTTTCGAATATATAATTTCGTAAATATCAACATC
ATATCATCAAGTACAGCGATAGAGAGATTGTAAAATAGTGAAATTACCAA
tttttcaatgtgaaaaaaccATTATTTAATGTAGGATTTAATTGTAGGAA
ATTTTATAATATCTTTCAATATAATTTGTAGTATTAATTGTAAAATCGAA
TTATCATACGATTACATTAggttaactaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016073XLOC_016073Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028372-exon-sc0000675-1491911889:141762..141947TCONS_00028372-exon-sc0000675-1491911889:141762..141947Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1510915933:141762..141947TCONS_00028372-exon-sc0000675-1510915933:141762..141947Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1575043694:141762..141947TCONS_00028372-exon-sc0000675-1575043694:141762..141947Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1491911889:142411..143185TCONS_00028372-exon-sc0000675-1491911889:142411..143185Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1510915933:142411..143185TCONS_00028372-exon-sc0000675-1510915933:142411..143185Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1575043694:142411..143185TCONS_00028372-exon-sc0000675-1575043694:142411..143185Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1491911889:143733..144336TCONS_00028372-exon-sc0000675-1491911889:143733..144336Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1510915933:143733..144336TCONS_00028372-exon-sc0000675-1510915933:143733..144336Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1575043694:143733..144336TCONS_00028372-exon-sc0000675-1575043694:143733..144336Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1491911889:145816..145844TCONS_00028372-exon-sc0000675-1491911889:145816..145844Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1510915933:145816..145844TCONS_00028372-exon-sc0000675-1510915933:145816..145844Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1575043694:145816..145844TCONS_00028372-exon-sc0000675-1575043694:145816..145844Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1491911889:145965..146163TCONS_00028372-exon-sc0000675-1491911889:145965..146163Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1510915933:145965..146163TCONS_00028372-exon-sc0000675-1510915933:145965..146163Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1575043694:145965..146163TCONS_00028372-exon-sc0000675-1575043694:145965..146163Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1491911889:146823..147091TCONS_00028372-exon-sc0000675-1491911889:146823..147091Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1510915933:146823..147091TCONS_00028372-exon-sc0000675-1510915933:146823..147091Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1575043694:146823..147091TCONS_00028372-exon-sc0000675-1575043694:146823..147091Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1491911889:147496..148043TCONS_00028372-exon-sc0000675-1491911889:147496..148043Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1510915933:147496..148043TCONS_00028372-exon-sc0000675-1510915933:147496..148043Clytia hemisphaericaexon
TCONS_00028372-exon-sc0000675-1575043694:147496..148043TCONS_00028372-exon-sc0000675-1575043694:147496..148043Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000675supercontigsc0000675:141762..148043 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.9939	35.4195	31.3542	28.1082	6.75973	5.71954	0.548371	0.403342	0	0	0.119762	0.167295	0	0.0204113	0.0503426	0	21.6244	20.5449	0.0157075	0.0328735	83.3153	70.7513	271.967	251.925	419.431	364.758	59.6943	78.0918	8.04188	11.9561
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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