TCONS_00028335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028335
Unique NameTCONS_00028335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028335 ID=TCONS_00028335|Name=TCONS_00028335|organism=Clytia hemisphaerica|type=transcript|length=1413bp
GACATACGTAATATTAGtagatttctttcaaacaaagATGGTACAGCCAT
AATAACACCTTCAACTATGAATGCAAAAGGGCATCAACAGAGTTATCCAA
CCACGTTTGGGACCTGCAAATCAAAAACATACAACCAAAATTATCATGGG
AGATTATCGACCACGCCCGCTCGTATTTTAAAGGCTTGGTAAACTGCAAC
ATCTGTCTCACAGAAAAATTTCACTTAATTACATCAGAGCTTCATCTCGT
AAACAAAAGATCAGAACTTATTTCCACATGTCGCCATAACAACAGATTTA
ATCTGAAGAACTTCAAATTGGTCCCCCCCCCGGATGAAtcatgaatttta
ttttcaatatgttttaataattgtttttattacagTTTTATTGCACAAAT
TATCCAGTTTTTCACATTCAAGGAATGCTTGAAAGGGATTAGttcgtcaa
aaaaaaggttggtATCATAGCTTTGAATGGGCTTTGAAtagttttgattg
ttttaagttgtatatttatttttagtatATTTGTTTTATATCAACAAACA
TATCAATCAAAAATATACACAATATGGTTGGTTTGATGGGTTTGATTCCT
ACTAGCATGTTCGTCTTCACCAAAAATATTGTCAAGCAGTCTGGATTAAG
AGCACCATGAACGCTTGCGCAGAGTCAACCCAGCGCTGCCCAAGAGAGCT
GGATGAATTGGCAGATCGCAGTCAAGTATTCAAACCTTCCAATGTCAACA
ACAGACCCTGCCACCCTTTCAAAATCATACCAGCCGTCCAAAGAACAACA
AACACTATCTTTAACTTATCAATGATTTTCAGAATCCAGATGGCACATGT
AAGGATAGACCAGGAAAATCGCAGCATGGACATAAGATGAAAGGTTATGC
TGAACTTGACAACACAGGATtataaaattttggaaatacatatttctaaa
ttttaatagTCCCTTTTCTGAAAGTGAAAGAAATGACTTGGGAgGATAGA
TTCCAACGCTTATATCAAACAAGAAATGGTGAAAAGAAGCCATCCATGGC
TCAACCGTCGATTCAGCCAAGAGTATAATGCCTGCCAAGACATGATCAAC
TGGCTAAGAAAGATGAGAAGGAGCTAAGGACGGATGTTTCATTGATTACA
CATCACATCCCTCTGTCAGCATGAAGGAATTGCCCGACGATGAAATGTTT
CTGAAAAACCATTAAATGATCCAGCATGGGTAAGTCTCTTGAATTACAAC
CACTACCACTTGATTAGGCGCTAAACCGAAAGTGTTTACTGATGTTTGCT
TTATTCATTTTCGTTCCTTATTGTATACAAGGCCTTATTGAACCTAGGGA
ACATTTTTCAAGAATAGCCCTGCATtgccaaaacaaaattttagctaGCT
TGCAGGTTATTTT
Run BLAST on NCBI

transcript from alignment at sc0000674:161083..173576+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028335 ID=TCONS_00028335|Name=TCONS_00028335|organism=Clytia hemisphaerica|type=transcript|length=12494bp|location=Sequence derived from alignment at sc0000674:161083..173576+ (Clytia hemisphaerica)
GACATACGTAATATTAGGTAAGAACTTGTTTATTTACATCCACCAGAACT
CCCTATAAAATACATTTCTGTCAGTGATGAATTGTCTTAAATGTATTTCT
AAAATCAtcttaaaaacaaatttgcctcttgcaaatcattatctAATGTA
AAGTTACCAAACTGTAAGGGATTGATTAATCATATTCCAAAAACTGTTCT
ATTCTTTGTACAGAGCTTTTGATACGATGCGACATAGGGTAGatatcaat
tttcaattatttcatGGCTTTGTTTCAAAATAAACTTCTGAAGGAGGTAT
AAATTAATTGCTGAAAGGGCAATCATAGATCGATTTAgagggaaaatttt
tattttcatcgtTTTTATGGCAAACTNACTTCTGAAGGAGGTATAAATTA
ATTGCTGAAAGGGCAATCATAGATCGATTTAgagggaaaatttttatttt
catcgtTTTTATGGCAAACTCATCTTGTTCCGaagatttctttgaaaaat
tgatggttttttttagcagatttctttcaaacaaagATGGTACAGCCATT
ATAACACCTTCAACTATGAATGCAAAAGGGCATCAACAGAGTTATCCAAC
CACGTTAGGGACCTGcaatttatcaaaaacatacaACCAAAATTATCATG
GGAGATTATCGACCACGCCCGCTCGTATGTCAACGGCTTGATAAACTGCA
ACCTCTGTCTCACAGAAAAATTTCACTTAATTACATCAGAGCTTCATCTC
GTACAAAAGATCAGAATTTATTTCCACATGTCNcacgacaattcactcaa
catgctccattttttaaaaagtgaaaccctggcattcatttgcttagacc
gagcatagcattgaatattgtgttacatgctttcagaatgaacagagcca
atgacgggtaaatattttgaacttgtgttcacgacaattcactcaacatg
ctccaatttttttaaataaaaattgaaacactggcattcatttgcttaga
ccgagcatagcattgaatattgtgtttacatgctttcagaatgaacagag
ccaatgacgggtaaatattttgaaCTTGTATTCACGACAATTCACTCAAC
ATGCTCCATTTTTTAAAAAATTGAAACCCTGGCATTCTTTTGCTTAGACC
GAGCATAGCAGTGAATATTGTGTttacatgctttcagaatgaacagagcc
aatgacttgtaaatattttgaacttgtattcacgacaattcactcaacat
gctccattttttaaaaagtgaaaccctggcattcatttgcttagaccgag
aatagcagtgaatattgtgtttacatgttttcagaatgaacagagccaat
gacgggtaaatattttgaacttgtattcacgacaattcactcaacatgct
ccattttttTAaataaaaagtgaaaccccgGCATTCATTTGcgtagaccg
agcatagcattgaatattgtgtttacatgctttcagaatgaacagagcca
atgacgagtaaatattttgaacttgtattcacgacaattcactcaacatg
ctccattttttaaaaagtgaaaccctggcattcatttgcctagaccgagc
atagcagtgaatattgtgtttacatgctttcagaatgaacagagccaatg
acgggaaaatattttgagcttGTATTCACAACaatgcaaaagaaaaaaca
ccagAGGAAAAAGGAAACAGCGAAAAGACACAAAGATTGCCATCCGCATA
TTGTGGTCAAGTTGACAATTTTTGTTGGCCTTTAAAAAGCCTGGAGGTGG
ATACTTATAgtaactaatttttttttaattttttctttaggtATAATAGA
TCAAATAAGCACCAGAATACCCCTGTTCAttgctttgatttttttatcac
tttattttttaataggTGTCAGTGAATCTTACTGGATTACTTTAAacaat
ttattgcaaattttttgaagcctggAGACAACTCAATCACTAAAATCATT
AATGAAGGAAGATGTAAAAACTTTTATGGCGATGATGTCATATGCCAAGT
ANTATGAAGgaagattttaaaaacttttatggCGATGATGTCATATGCCA
AGTACATCAGATTATCATAAAATTAACGTTCCTGTGACACCATAATGTGA
ATCAGCAGATTGAAGATTCAAATCGAGTTTCAGTTGTCAAGTCATGAAGT
AATAGATTACGATGACGATTGCATAGAGTATGTTTGATCCACGCAAGGAC
TCATGTTGGTTTGGCCTAAAGAGGTAAAAGAAGATCTCCTTTTTATCTTA
TTAAAGTAGCTTTCACATGAGGGACAAGTAAAGATTCCCTCATTTTTGAT
AATATGAATCTTCTTTATATTGAAAATGCGATTATTAGATTCAAACCATT
TATGAAAGTAATAATGCGGCTTTGTCTAACTTAGTAATNNNNNNNNNNNN
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CATTCCATCCATATATTCAGCTGAGACATACGTAATATTAGGTAAGAACT
TGTTTATTTACATCCACCAGAACTCCCTATAAAATACATTTCTGTCAGTG
ATGAATTGTCTTAAATGTATTTCTAAAATCATCTTAAACAAATTTGCCTC
TTGCAAATCATATCTAATGTAAAGTTACCAAACTGTAAGGGATTGATTAA
TCATATTCCCAAACCTGTTCTATGTTTTGTTCAGAGCTTTGTATACGATG
CCACATAGGGTAaatatcaattttcaattatttcatGGCTTTGTTTCAAA
ATAAACTTCTGAAGGAGGTATAAATTAATTGCTGAAAGGGCAATCATAGA
TCGATTTAgagggaaaatttttattttcatcgtTTTTATGGCAAACTCAT
CTTGTTCCGaagatttctttgaaaaattgatggttttttttagcagattt
ctttcaaacaaagATGGTACAGCCATTATAACACCTTCAACTATGAATGC
AAAAGGGNCGTTTTTTTTTAgtagatttctttcaaacaaagATGGTACAG
CCATAATAACACCTTCAACTATGAATGCAAAAGGGCATCAACAGAGTTAT
CCAACCACGTTTGGGACCTGCAAATCAAAAACATACAACCAAAATTATCA
TGGGAGATTATCGACCACGCCCGCTCGTATTTTAAAGGCTTGGTAAACTG
CAACATCTGTCTCACAGAAAAATTTCACTTAATTACATCAGAGCTTCATC
TCGTAAACAAAAGATCAGAACTTATTTCCACATGTCGCCATAACAACAGA
TTTAATCTGAAGAACTTCAAATTGGTCCCCCCCCCGGATGAAtcatgaat
tttattttcaatatgttttaataattgtttttattacagTTTTATTGCAC
AAATTATCCAGTTTTTCACATTCAAGGAATGCTTGAAAGGGATTAGttcg
tcaaaaaaaaggttggtATCATAGCTTTGAATGGGCTTTGAAtagttttg
attgttttaagttgtatatttatttttagtatATTTGTTTTATATCAACA
AACATATCAATCAAAAATATACACAATATGGTTGGTTTGATGGGTTTGAT
TCCTACTAGCATGTTCGTCTTCACCAAAAATATTGTCAAGCAGTCTGGAT
TAAGAGCACCATGAACGCTTGCGCAGAGTCAACCCAGCGCTGCCCAAGAG
AGCTGGATGAATTGGCAGATCGCAGTCAAGTATTCAAACCTTCCAATGTC
AACAACAGACCCTGCCACCCTTTCAAAATCATACCAGCCGTCCAAAGAAC
AACAAACACTATCTTTAACTTATCAATGATTTTCAGAATCCAGATGGCAC
ATGTAAGGATAGACCAGGAAAATCGCAGCATGGACATAAGATGAAAGGTT
ATGCTGAACTTGACAACACAGGATtataaaattttggaaatacatatttc
taaattttaatagTCCCTTTTCTGAAAGTGAAAGAAATGACTTGGGAggt
aatttattcaaaaaaacaaacaatgcaTCTGTCTCCTATTAGGAATGCAT
TAGTCGACAAGAGGTGACCAAGCAAAGGCCTGGTAATATGATGTTGTTTT
CGCCTAAAAAACCACATAACAAAAATCATGGCCTTTGATAAAAGTTACAA
AATAGACATACAAATAGCATTTCATATTCTGACCACAAGATGTGTTtcac
aaaagtttcaaaactttgatgATGTGATCAAAAAtgaacaagacgactta
aagtcgaaaatttcgcataatacttgaacatcaacgacgaagacgcgtga
aacgtgactcctgcagcattatgcattttgaatgaagcgttacacaaaat
atacacaatgcattgtacacacaggtcatagataccctgtttttttaatg
aaaaatctcaatccattaaaaaaaagattcctttaAAAATGCGACTTAAG
AATTCTattctataaagcgtaaacaaaatctttcaattcagaataattca
gagaactgcaatatacttgagaaaaataatttaaaatttttttgaaaacg
aagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNcccgacttcacggtacttgctaaaactgactgttt
gtcacaactggtttcactattaacacataactatctggtgaaaaaaggaa
aaaaagatcatacctgtctgtctgtgctgtttgtagttttggtgaagaag
agaagagagggttaataatgttgttgtttgtttggaaaattaactctttt
tgtactacttactgagcatgatcaatttattggtgcattcactaactaca
caaacataaaatacttagtagcaAACAAATATTGAACCTCTTTaaacact
ctacaaaagaccagaaaatatgataaaaatttatacagcagcagcaagtt
tcaaaagcatgtgcaatcaagcagccattaaaaagNNNNNNNNNNNNNNN
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NNNNNNNNNNNNattttatttattaagaaaagccctgttttttatcactt
tttatctttgtgagtgagtccacctttagaatatttgccgtagtacgccc
gcagccaaacgccataatttgcgccctaaaaaatgtctcgccagccagac
acacggaaggctatcgtaatactttcgctaagcgaaattgataaatcttt
ttttctgataTCATCGAAGAATTCCGTAATCAATGTGGTCTCTCTATCTT
AGCATAGGTCCTTCTCACAATGTCGTCAGTATGTAACTATGCAATTAACA
TTTAAACCAATATTTCCTCCTGTCCATCTGGACAGGAAAATTGTATTAAT
AGCAAGAAATATACAACTCTGCTAGCTGTTCTCCTTCTTTCAAGTACCAG
AAAGAGGGTTTTGAAATTCAGCACATACTACAAACATTTTTCTGTTTTAT
CTATTAGCCACTCCATGAAAAGTTCTGTTCCAAAATACCACGAGATTTCT
CAATAAGTAATGACCACTTCTCTCCACAGTTTCATAGTTTGTTAAACTTT
TCCCAGACCATTCATTCCATAGACTCCAAAAGCAGCCAGCTTCCCCAGTA
AATTACTGCCATCTCTGCAAAACTCTCTGTTTATTCTGGTTTATTACATC
TCTCCTCGATAACTTCTGTTCCAAAATACCACtggatttttcaatttaaa
atgaCCACAGATTTCTCAATGAGTTTTCACTTCTTTCCTCAATAGCTGCA
TGATTTACCCCACCTCTCCTAAAAAATTCAACCACCAATAAAAACCNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNCCATCATTCATTACCACGCTCTCCGC
AGTTTTTTGTTTACCACATCTGTTTGCCACATTCACTCCCTCCAAAATAC
TCTGTTTGTTACACCCCTACTCAAAGAATCACGGTTTATAAGACTTCTTG
TGGTAGTTCCATCTCAAAGTACCACTATTTATCAATAGATAATTACCATG
GTTTCCTAACCTCCTCGAAAGGATTCATCCTCAAAATACGATTACATTTC
TCAATGAATTATTACCAGTTATCTTAACAGTTCAACAGTTTCCCGCATCT
CTGCTAGAAAATTCAGTCCGAAAATAGTACTGAATTCTATCAATAAATAA
TGACCACATTCTCCAAAGTTTCATGGTTTGCCAACCTTTCTTAGAAAACT
CACTTCGAAAATACCACCAGTTCCCTCAGTTAATAACTACCATGCTCACC
AAATTTTATCGTTTGCTACACGTCGCCTAGAAAATTCAGTCTCAAATACC
ACTGGGTTTTCTCAGTAAATTTCTACCATTATCTCCAATGTTTCACGGTT
TGCACAGCCTTTCCAGAGTATGCCTTTTCAGAATATCCCTTTCCGAGATG
GCATTTCCATGGAACCCACTTTAAAAATTCCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGATGGCATTTCCATGGAAC
CCACTTTAAAAATTCCACCAATTTCAAGTTGACTACTATCACATACTCTC
CAAAATTCTCTGTTTGTTACACCTCGTCAAAGATTTCGTTGCCAAAATAC
CATTGTATTTCTAGATGAAATATTTCCACTTCTCCCCACAGTTGTATGGC
TTGCCACACCTAGATAATTCAGTTTCAAAGTACCACTGAATTTTCTCAAT
GAATAATGACCACGTTTCAAAGTTTCACGGTTTGCAAACCCTCTCCTAGA
AAACTCGCTTCGAAAATACCACCACTTTCTTCAGTTAATAGCTACCACGC
TTTCCAAAGTTCTCTGTTTGTCTCCCCAAAAGTTCATGCTCTCCAAAGTT
TCACGATTTGCACCCATTTTTAAGTACTACTAGTTTCCTCAGTTAATGAC
CACagattttattatattattttattttatttgccaCTCCTTcccaaaaa
gttcaaaataccACTGGATTTTCTCCATGAACAATTGTCACGTTCTCCAA
ACTCTCATGGGCTGCCACACCTCTCATAAAAAATTCACTACAAAACACCA
CCAGTTTTCTCAGTATTTTACCAACCCTCCACAGTTTCTTCTAGGAATTC
GGCCATACCACCAGTTTTTCCTAGTATATTTATGATCATCTCTCTTCAGT
GTCACGCTTTGCTAATTTCCTCTCAAAGTTTCAGCCATAAGATACGTCAA
CTCTCTTCACAATATTTTAAAGTTACACTAGAATCTCAGGTTTCATGGCT
CGAATTTCAGATCCAAGAAGTTCCAATTCTCAAAATACCATTAATCTTTC
AATGAATTATTACCAAATATCTAAACAGTTCCACAGCTTACCATTCAGTA
CTTCTATCATATCTTTATAAATCAGTCTCAAAATACAACTGGTTTTTTAA
CTTTCTAATGCTTCAAGATTGGCTCAACTCTCCTTAAAAAATCTATTAAT
CACTGAATTTCTCAATGAATTTTTGCCACTTGATAGTTTGCGAAACCTCT
CCTCGAAAATTCACTCACTGATCATCAGTCTAGTCAACTTCGGAATCGCC
ACACCTCATTTCAGTCTCATAATACTCCCTTCCAAAAGTTCAGTCTCCAA
ATACCACTGGTACCGGTACcaccattttctttttctctctctcCCAACCA
CAGTTTGGCACACCTCACCCCGAGAGATTCATTCCAGATTTACTGCCAAT
TATCTCAACGAGTTATCACCACTTCACCACACCTCTCCTCCATAAAGTTC
AGTCTCAATAAACCacggcaaatctcagtgaatttcaaattatttcaaca
GCTCAGGGTTTGTCCACCTCTCCCGGAGAGATTCCAAATTTCCACCAGTT
TTTTCAATGAGTTATTACCACTTCACCACGGTTCTAGGACAATTCCCCCT
CGTGACAATTGCCCCCCGGACAATTGCCCCCGGGACAATCACCCCCTCTC
ctccaaaaatttaaatctcAATAAATTTCAGTCCTCAATAAATCactgca
aatctcagtgaattTCACATCTTCTAACAGGTCAAGGTTTGTCACATCTT
TCTTTGAAAAGTTCTTCCTAAATTACCATCGATTTGGTCACCACACCTCT
CCCCATCTTTCAACAGTTTCACGCTTTGCAACACCTCTCCTCAAaagatc
attttcaaaattaattcaaaatttcttaatGTGCTATTTACCACACTCAT
TCCTAAATTTTAACGTTCTCAGGATAGATTCCAACGCTTATATCAAGCAA
GAAATGGTGAAAAGCAGCCANAAAATTTCTTAATGTGCTATTACCACACT
CATTCCTAAATTTTAACGTTCTCAGGATAGATTCCAACGCTTATATCAAA
CAAGAAATGGTGAAAAGAAGCCATCCATGGCTCAACCGTCGATTCAGCCA
AGAGTATAATGCCTGCCAAGACATGATCAACTGGCTAAGAAAGATGAGAA
GGAGCTAAGGACGGATGTTTCATTGATTACACATCACATCCCTCTGTCAG
CATGAAGGAATTGCCCGACGATGAAATGTTTCTGAAAAACCATTAAATGA
TCCAGCATGGGTAAGTCTCTTGAATTACAACCACTACCACTTGATTAGGC
GCTAAACCGAAAGTGTTTACTGATGTTTGCTTTATTCATTTTCGTTCCTT
ATTGTATACAAGGCCTTATTGAACCTAGGGAACATTTTTCAAGAATAGCC
CTGCATtgccaaaacaaaattttagctaGCTTGCAGGTTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016055XLOC_016055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028335-exon-sc0000674-1491911889:161083..161099TCONS_00028335-exon-sc0000674-1491911889:161083..161099Clytia hemisphaericaexon
TCONS_00028335-exon-sc0000674-1510915933:161083..161099TCONS_00028335-exon-sc0000674-1510915933:161083..161099Clytia hemisphaericaexon
TCONS_00028335-exon-sc0000674-1575043694:161083..161099TCONS_00028335-exon-sc0000674-1575043694:161083..161099Clytia hemisphaericaexon
TCONS_00028335-exon-sc0000674-1491911889:164904..165880TCONS_00028335-exon-sc0000674-1491911889:164904..165880Clytia hemisphaericaexon
TCONS_00028335-exon-sc0000674-1510915933:164904..165880TCONS_00028335-exon-sc0000674-1510915933:164904..165880Clytia hemisphaericaexon
TCONS_00028335-exon-sc0000674-1575043694:164904..165880TCONS_00028335-exon-sc0000674-1575043694:164904..165880Clytia hemisphaericaexon
TCONS_00028335-exon-sc0000674-1491911889:173158..173576TCONS_00028335-exon-sc0000674-1491911889:173158..173576Clytia hemisphaericaexon
TCONS_00028335-exon-sc0000674-1510915933:173158..173576TCONS_00028335-exon-sc0000674-1510915933:173158..173576Clytia hemisphaericaexon
TCONS_00028335-exon-sc0000674-1575043694:173158..173576TCONS_00028335-exon-sc0000674-1575043694:173158..173576Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000674supercontigsc0000674:161083..173576 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.45504	1.51325	0.289077	0	0	0	0	0.0795878	0	0.0962805	0.0670825	0.0549656	0.155554	0.044534	0.0373289	0.0421937	0	0.0726589	0	0.172793	0.197025	0	0.32042	0.160563	0.223212	0.426727	5.5848	3.43925	0.256545	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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