TCONS_00028330 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028330
Unique NameTCONS_00028330
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028330 ID=TCONS_00028330|Name=TCONS_00028330|organism=Clytia hemisphaerica|type=transcript|length=828bp
TGGCTATCAATAAAACAATTCTCAACAATCATTGACTACTTTAACGgaaT
ATCGGTGCTGGTCAGCCAAAATTCACGGAGAcgtccaaaattttaaaatt
gattacaaacaaagaaaacagcatgaaatttcaaaaaatggaagcatggt
tactgaaaaaaaaataaagccaGAACTTTACATCTCATCAAGaTTCCGAT
TCCAGTCTCCATAAACCAATATTTACATCAATATCAACGTAACGAGAGGG
AGTTTCCTTTCTATCTGAACATTACGGCGTAGACATAAAGGATGTATAAT
TATTGACTGATGGCATAGCCCTTGGTAATGAAAATATCCAGGGTCAAAAG
TTGTCTTCGACGAAATTTACTGTATCAAAGCGATGATATCCCAATTAAAA
CAAACGGATCAGTTTGACTTGAACAGCGTTACAAAACAGCTTGAAAGAAT
TATGatgagaaaattcttttttgtccAGTTTCGCCCTCAAAATTCAGGAA
ATGTTTGCTGCAGAATCGGAAGAAGTGAAAGAAAATACTGTCTAAGGaGG
TTCAACTGGCGAAAGATAATGTTTCCATTCATCCAACTCTTCTTGAAACT
GTCCGGTCACGGTGCTATCACTCTTCCTATCATCCATCAGCCACGACTGA
AAACGAGAAAAATCAACATTGAACTGGTACCGTTACGTTTCCATGGATGT
CTTATTCATGCATGGTGTCTCTAGGTCTTTACTCTGAGTGTCCTGTTTGA
CATGACTTATAATGATTGAAATGAATAATCCATCAGATACATCACCCCGG
CTTCGATATTACGGGCTGAACTGATCTG
Run BLAST on NCBI

protein sequence of TCONS_00028330-protein

>TCONS_00028330-protein ID=TCONS_00028330-protein|Name=TCONS_00028330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MISQLKQTDQFDLNSVTKQLERIMMRKFFFVQFRPQNSGNVCCRIGRSER
KYCLRRFNWRKIMFPFIQLFLKLSGHGAITLPIIHQPRLKTRKINIELVP
LRFHGCLIHAWCL
Run BLAST on NCBI

transcript from alignment at sc0000674:14022..23267+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028330 ID=TCONS_00028330|Name=TCONS_00028330|organism=Clytia hemisphaerica|type=transcript|length=9246bp|location=Sequence derived from alignment at sc0000674:14022..23267+ (Clytia hemisphaerica)
TGGCTATCAATAAAACAATTCTCAACAATCATTGACTACTTTAACGGTaa
tctttgtttcttttgatCCAATACAGTTTGAAATTCTTGTATACTTTGCA
ACCTTTCCAATTATGCAAGGAAAAAACTGGATTGCATGCTGTTGAGAGCT
TAAGTATTCTACCTCTCGTGTGCTATTGTCCGCGTGTTTATACTTGACAA
TGCAAAAAAGTTCTTCTCGACTACCTTAAGGGAGGAAATTTTCACGGGAA
GAAATTTCCGTGGAATTTAAGTGTGCTTACTTTGCTTGATTGTTCGATGC
TAGACAAGACATAGCTCAGGAAGTAAAAAGTATAGTTTGATAAAGCCTCC
CTGCTTTTCCCAGACCTGTCCTCTGTAGTCAAATTTCAGCCTATAATAGA
GGTCACCCTGGTAGCACATTGTATAACACAGCATAAAACTATGACCATTT
AATGATATNATAGTTTGATAAAGCCTCCCTGCTTTTCCCAGACCTGTCCT
CTGTAGTCAAATTTCAGCCTATAATAGAGGTCACCCTGGTAGCACATTGT
ATAACACAGCATAAAACTATGACCATTCAATGATATGATATATGATATAC
AATAAGGAGTAACATATTTAATAAAGTTCCatcaatgtcaattgaatttc
TACAATTGTTCTTCATTCTATTGATTATGGCTCCATATTAttcatttgta
attttttatttcaggaaTATCGGTGCTGGTCAGCCAAAATTCACGGAGAc
gtccaaaattttaaaattgattacaaacaaagaaaacagcatgaaatttc
aaaaaatggaagcatggttactgaaaaaaaaataaagccaGAACTTTACA
TCTCATCAAGGTCTCAGAAAGTTTCATATAAACTAAATGAAGATCATGAT
GTCCAAAATCTGATTGATAAAATGATTTTCTTGAAGTTTATCAGCTACTT
TGTTCTCTATTTAATCACTTTGGCTATTATAAATAAACAACATCTGTACC
TCCCACCACACACTTTTCATCTTCACACCAGGTTTCCATTATCATTACTA
AGCAATTTTTCTGATTCATTCAAGTGTTTCAAGGTATAAGTATgcatttg
cattttttttagaTTCCGATTCCAGTCTCCATAAACCAATATTTACATCA
ATATCAACGTAACGAGAGGGAGTTTCCTTTCTATCTGAACATTACGGCGT
AGACATAAAGGATGTATAATTATTGACTGATGGCATAGCCCTTGGTAATG
AAAATATCCAGGTAAGACAAGACTAGCTCTATACCATATCTCATCCTTAA
TTCAATCTCTTGTCAGTCCTGTGTTTTTTAGCATTCTTTTAATTACAttt
taaatcaataaaaaaatttaaatatatttaataatttaataGTTTATATc
ttttgcattttctttttataaatcttAGTTTAGACGgaaaaacaattttg
taaaattgacgacgaataaatgttaaataaaccagctgcgctggaagctc
cagCTATAAGGATTATTAGCACAAAGCTTTGAACGAAGACAAAGATTGAA
AAGTAAAAACGTGTGCGAATTTTACGTTATAAGAGATTGGATTAAATAGA
TCTAAAATacagaataaaataaagaagGTAGGAAtcaattttggcgagaa
tttaactTGGCTTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatcatgtgtttgatttgc
cgagttaaaaaaataaatgacagaaattgaagcttgcaacagatttacac
tggaaatactttggcaCAACAcctatcacatctgacttaccgcttgagcc
gccatcttgaaacactatgatttgtaaaaacaacgcacgctaaaagtacc
caaaaagttaacccgatatcggaagaaagtttagaaatcaaagtgagatc
gggaaattatttttgaagtcttgaaCGCCCGATGAATGATACCCATTTTA
ATGCTCAGCGTGGCTGGagcaataaacaaaaataaaataaaaaacaacga
aTCTCACTGGCAAATACTTATCTTTGCTAACTTTGTATCCTTACTATGTC
TCTTTTAAAggttaatacactttttttataagaacaattttataagaaca
atgaggctcaaaaaatgccaaaaaataagaactatttaagaacagtggag
aggctgaaagtattttaaaagtagtttttttgtttagttacagcaaaaag
aatcactggtttctaaaatcctctaaatagtaaagcaaatagccaaaact
tgttttttaccttatataaaataataacaaaataagaacaattcaaggtt
caaagtgccaaaaaaataagaacagccgagcctcagcaaaaatttactgg
ttcttattaaAGAAAGTGTAGCTTCTCTCTATTTTTCAGAAGATTACTAA
ACAGGTCTAGTGTTTTTGTATCAGTATACAAAATTATTGAACCATTAGTG
GTAGTTTGTATTGACCCTAAAGAATATTTTGTTTCTGGTCCAGCTTGAAA
ATTGTCGTAACCCGGCcgaattttttggacctacctccgggtgccccggt
ggaggtcctatgaattaacctctgtctgttcgtccgttcgttcgttcgtt
cgtctgttaccagcttttctcgagattggctcattagttttttctgattt
tttgcacaaagatgcaaaatggcaatggccaaaatgtgacggagcccaat
tgtccaaaacttggccgagtccgatttttggccggaaatcgccgtttttc
tagattttcattggacttttccatataattggttgttttttcattcaaaa
acgttatcaatagcaatgcccaccatcaagcatgtttcaattttcaataa
aattgagttttgaagccggaactttctaaaaatcgccggaacagccgatt
ttcgccggaaaaacggtatttcttgaatttcttgagctgtactttatatt
cttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ttttcgaaaaacatctttttccggccgaaaatgccggaaatatgctggaa
aaactgtttttttggcattttctcgagatttatcattagttttttctgat
tttttgctcaaagatgcgtattaacaatgctcaaaacatggccgagtccg
ttttttaagaaaaaattttttccggcggaaaatgcctgaaatatgccgga
aatcgccgtttttctagattttcattggacttttccatataattggttgt
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgctatattttctgactgat
ttttttcatttttctttttgcattgctatcaatgctaactaactttcatc
atcaggtaggtccattcagcatgttgcttgttctcTTTGAACtttccatt
tttttccaaattttccattTCAACATTTTCTACGCAAACAAGTGATCTAA
ACAATCTCTCCATATTTTCCATTCTGTATGATTTTGTTAATGCTTTTGAT
TTTACTTCTCAGGGTCAAAAGTTGTCTTCGACGAAATTTACTGTATCAAA
GCGATGATATCCCAATTAAAACAAACGGATCAGTTTGACTTGAACAGCGT
TACAAAACAGCTTGAAAGAATTATGGTACAAGCCTCCCTTATAATTCATA
ATAACAGAAACAATTTCTAACTGTAGGTTTGATCTCTCATAATTTCAACA
ATATCATCATATTCATCTAAATTGAACTACATAGGGTCACCCAAGTTGAC
AAACAACGTCGTTTTTCTTGGCTGCTAAACTTTTCTGAACAATTTAAGGA
AAAAATTTATATATGTTGGGGAGTGGCGTTTTTTTAGAAGATTTTATTCT
CACTTATTGAAAATTGTCaaacaatgaaattaatttattctgattttatt
tttttagatgagaaaattcttttttgtccAGTTTCGCCCTCAAAATTCAG
GAAATGTTTGCTGCAGAATCGGAAGAAGTGAAAGAAAATACTGTCTAAGG
GTAAGGaattaattttacaaaattaaaaggaaaaaggaaacaaattaatt
acaatattttgttcatacacgtctttttttttttaagaaactagttttac
caagcagcctcaatgtttcttaagaaatcggccttctTNTACTTCTCTCA
TGAAATCAATCTAGAAGAATTCTGCATAAAAGGAAACCGGGTTAAGATTC
ATCATATTTGAATGCTTTCAAAGGTCTGAAACGTTTAAATTGACTCTGTA
ATCTTTCGTCTTCGGACCATCGGACGCAATTCTCTGTTAAGGTCGATAGG
TGTATGAGCAATTTCATGATCGTAATGAATCTTGCTCATACTTCGTATTG
ATTTAACGATTTGAAAGTCTTCAAAAGTGAATTTACTATTACAGAGCAAC
TAGTTTCCATTCCCCCTAATTTATTGATTcattcaattctgttttgataa
TCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNtactgcagtgacgtaggaaaaaatcatgtactgaaac
catgtactgaaaaaaatcatgtactgaaatcaggccaccggggcactgag
acaggggtgttatagaGGTTCAACTGGCGAAAGATAATGTTTCCATTCAT
CCAACTCTTCTTGAAACTGTCCGGTCACGGTGCTATCACTCTTCCTATCA
TCCATCAGCCACGACTGAAAACGAGAAAAATCAACATTGAACTGGTACCG
TTACGTTTCCATGGATGTCTTATTCATGCATGGTGTCTCTAGGTCTTTAC
TCTGAGTGTCCTGTTTGACATGACTTATAATGATTGAAATGAATAATCCA
TCAGATACATCACCCCGGCTTCGATATTACGGGCTGAACTGATCTG

Coding sequence (CDS) from alignment at sc0000674:14022..23267+

>TCONS_00028330 ID=TCONS_00028330|Name=TCONS_00028330|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000674:14022..23267+ (Clytia hemisphaerica)
ATGATATCCCAATTAAAACAAACGGATCAGTTTGACTTGAACAGCGTTAC
AAAACAGCTTGAAAGAATTATGatgagaaaattcttttttgtccAGTTTC
GCCCTCAAAATTCAGGAAATGTTTGCTGCAGAATCGGAAGAAGTGAAAGA
AAATACTGTCTAAGGaGGTTCAACTGGCGAAAGATAATGTTTCCATTCAT
CCAACTCTTCTTGAAACTGTCCGGTCACGGTGCTATCACTCTTCCTATCA
TCCATCAGCCACGACTGAAAACGAGAAAAATCAACATTGAACTGGTACCG
TTACGTTTCCATGGATGTCTTATTCATGCATGGTGTCTCTAGATGATATC
CCAATTAAAACAAACGGATCAGTTTGACTTGAACAGCGTTACAAAACAGC
TTGAAAGAATTATGatgagaaaattcttttttgtccAGTTTCGCCCTCAA
AATTCAGGAAATGTTTGCTGCAGAATCGGAAGAAGTGAAAGAAAATACTG
TCTAAGGaGGTTCAACTGGCGAAAGATAATGTTTCCATTCATCCAACTCT
TCTTGAAACTGTCCGGTCACGGTGCTATCACTCTTCCTATCATCCATCAG
CCACGACTGAAAACGAGAAAAATCAACATTGAACTGGTACCGTTACGTTT
CCATGGATGTCTTATTCATGCATGGTGTCTCTAGATGATATCCCAATTAA
AACAAACGGATCAGTTTGACTTGAACAGCGTTACAAAACAGCTTGAAAGA
ATTATGatgagaaaattcttttttgtccAGTTTCGCCCTCAAAATTCAGG
AAATGTTTGCTGCAGAATCGGAAGAAGTGAAAGAAAATACTGTCTAAGGa
GGTTCAACTGGCGAAAGATAATGTTTCCATTCATCCAACTCTTCTTGAAA
CTGTCCGGTCACGGTGCTATCACTCTTCCTATCATCCATCAGCCACGACT
GAAAACGAGAAAAATCAACATTGAACTGGTACCGTTACGTTTCCATGGAT
GTCTTATTCATGCATGGTGTCTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016052XLOC_016052Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028330-proteinTCONS_00028330-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028330-exon-sc0000674-1491911889:14022..14067TCONS_00028330-exon-sc0000674-1491911889:14022..14067Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1510915933:14022..14067TCONS_00028330-exon-sc0000674-1510915933:14022..14067Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1575043694:14022..14067TCONS_00028330-exon-sc0000674-1575043694:14022..14067Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1491911889:14736..14881TCONS_00028330-exon-sc0000674-1491911889:14736..14881Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1510915933:14736..14881TCONS_00028330-exon-sc0000674-1510915933:14736..14881Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1575043694:14736..14881TCONS_00028330-exon-sc0000674-1575043694:14736..14881Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1491911889:15134..15282TCONS_00028330-exon-sc0000674-1491911889:15134..15282Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1510915933:15134..15282TCONS_00028330-exon-sc0000674-1510915933:15134..15282Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1575043694:15134..15282TCONS_00028330-exon-sc0000674-1575043694:15134..15282Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1491911889:21484..21596TCONS_00028330-exon-sc0000674-1491911889:21484..21596Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1510915933:21484..21596TCONS_00028330-exon-sc0000674-1510915933:21484..21596Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1575043694:21484..21596TCONS_00028330-exon-sc0000674-1575043694:21484..21596Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1491911889:21879..21971TCONS_00028330-exon-sc0000674-1491911889:21879..21971Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1510915933:21879..21971TCONS_00028330-exon-sc0000674-1510915933:21879..21971Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1575043694:21879..21971TCONS_00028330-exon-sc0000674-1575043694:21879..21971Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1491911889:22987..23267TCONS_00028330-exon-sc0000674-1491911889:22987..23267Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1510915933:22987..23267TCONS_00028330-exon-sc0000674-1510915933:22987..23267Clytia hemisphaericaexon
TCONS_00028330-exon-sc0000674-1575043694:22987..23267TCONS_00028330-exon-sc0000674-1575043694:22987..23267Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000674supercontigsc0000674:14022..23267 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4648	1.25575	0.729222	0.398625	2.08688	0.732926	0.73687	0.695368	0.793149	1.46781	0.116135	0.496226	0.682683	0.279366	0.347084	0.466763	0.51631	0.573175	0.426487	0.255022	0.182326	0.364126	1.2307	1.28647	0.454208	0.989807	0.628718	0.323848	0.924149	0.713206
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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