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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028307 ID=TCONS_00028307|Name=TCONS_00028307|organism=Clytia hemisphaerica|type=transcript|length=1442bpRun BLAST on NCBI transcript from alignment at sc0000673:39958..42763- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028307 ID=TCONS_00028307|Name=TCONS_00028307|organism=Clytia hemisphaerica|type=transcript|length=2806bp|location=Sequence derived from alignment at sc0000673:39958..42763- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00028307 vs. Swiss-Prot (Human)
Match: FLNB (Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 1.716e-24 Identity = 71/184 (38.59%), Postives = 93/184 (50.54%), Query Frame = 3
Query: 732 GGDGIKEGTAGQPVTFHLDGR---NAGPGQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFV 1274
G D +E T F +D R G + PSG T ++DN DGTY V+ E GLH VEV +D PIP SPF V + + +V+A GPGL N+ N F V ++GAG G + + + GP + K+ RDN KD S + Y P PG Y NI + HI GSPF + V
Sbjct: 1240 GKDVFREATT----DFTVDSRPLTQVGGDHIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDVPIPNSPFKVAVTEGCQPSRVQAQGPGLKEAFTNKPN-VFTVVTRGAGIGGLGITVEGPSES-KINC-RDN-KDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRVPV 1415 HSP 2 Score: 105.916 bits (263), Expect = 7.021e-24 Identity = 71/190 (37.37%), Postives = 99/190 (52.11%), Query Frame = 3
Query: 705 RSSASSLVVGGDGIKEGTAGQPVTFHLDGRNAGPGQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFV 1274
R+S L G I+E T F +D + AG G+L + P G V D DG Y + S PG +++ + W G IP SPF V++ M+KVRA GPGL GI+ + + +F V+S G+ G++ I GP A K+E Y D D S +V+Y P EPG Y +I DE I SP+ F+
Sbjct: 456 RASGRGLQPKGVRIRETT-----DFKVDTKAAGSGELGVTMKGPKGLEELVKQKDFLDGVYAFEYYPSTPGRYSIAITWGGHHIPKSPFEVQVGPEAGMQKVRAWGPGLHGGIVGR-SADFVVESIGSEVGSLGFAIEGPSQA-KIE-YNDQ-NDGSCDVKYWPKEPGEYAVHIMCDDEDIKDSPYMAFI 636 HSP 3 Score: 102.449 bits (254), Expect = 8.837e-23 Identity = 65/180 (36.11%), Postives = 94/180 (52.22%), Query Frame = 3
Query: 735 GDGIKEGTAGQPVTFHLDGRNAGPGQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFV 1274
G G+KE +P F + R AG G L PS + + DNKDG+ + + PG + V + + G IPGSPF V + D KV+ GPGL SG+ + +F VDS AG ++VR+ GP+G + DN D + V Y PS+ G Y ++ ++DE I SPF++ V
Sbjct: 1335 GPGLKEAFTNKPNVFTVVTRGAGIGGLGITVEGPS--ESKINCRDNKDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRVPVKDVVDPSKVKIAGPGLGSGVRARVLQSFTVDSSKAGLAPLEVRVLGPRGLVEPVNVVDN-GDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFKVKV 1511 HSP 4 Score: 93.5893 bits (231), Expect = 6.990e-20 Identity = 65/203 (32.02%), Postives = 98/203 (48.28%), Query Frame = 3
Query: 714 ASSLVVGGDGIKE--GTAGQPVTFHLDGRNAGPGQLSCRCRAPSGQMTY-VLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLL-SGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFVAKNE--QELNEW 1304
AS + G G++ A +P F + AG G + P G+ T +L+ D + Y +PG H V++ + G IP SPF+V++ +A + RA G GL G+ + +F+VD+K AG G + V + GPKG ++ +D D Y PS PG Y+ I W HI SPFE+ V Q++ W
Sbjct: 354 ASKVTAKGPGLEAVGNIANKPTYFDIYTAGAGVGDIGVEVEDPQGKNTVELLVEDKGNQVYRCVYKPMQPGPHVVKIFFAGDTIPKSPFVVQVGEACNPNACRASGRGLQPKGVRIRETTDFKVDTKAAGSGELGVTMKGPKGLEELVKQKDF-LDGVYAFEYYPSTPGRYSIAITWGGHHIPKSPFEVQVGPEAGMQKVRAW 555 HSP 5 Score: 93.5893 bits (231), Expect = 7.180e-20 Identity = 62/186 (33.33%), Postives = 95/186 (51.08%), Query Frame = 3
Query: 717 SSLVVGGDGIKEGTAGQPV-TFHLDGRNAGPGQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLS-GIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEI 1268
S + + G G+ G + + +F +D AG L R P G + V + DN DGT+TV S+ G + V V++ + IP SPF V+++ D KV A GPGL S G+ +F +D++ AG G + V+I +G K + DN KD + V Y P + G Y + + + I SP+ I
Sbjct: 1422 SKVKIAGPGLGSGVRARVLQSFTVDSSKAGLAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFKVKVLPTYDASKVTASGPGLSSYGVPASLPVDFAIDARDAGEGLLAVQITDQEGKPKRAIVHDN-KDGTYAVTYIPDKTGRYMIGVTYGGDDIPLSPYRI 1606 HSP 6 Score: 93.2041 bits (230), Expect = 8.815e-20 Identity = 55/167 (32.93%), Postives = 90/167 (53.89%), Query Frame = 3
Query: 807 GQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFVAKNEQELNEWR 1307
G+++ PSG+ I DNKDGT TV +E GLH + +++ G IP SP + P+ V A+GPGL+ G+ N+ F + ++ AG G + + I GP K E+ + KD + V Y P+ PG Y+ + ++D+HI GSPF + + + ++ +
Sbjct: 1758 GEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGSHIPESPLQFYV-NYPNSGSVSAYGPGLVYGVANK-TATFTIVTEDAGEGGLDLAIEGPS---KAEISCIDNKDGTCTVTYLPTLPGDYSILVKYNDKHIPGSPFTAKITDDSRRCSQVK 1919 HSP 7 Score: 92.8189 bits (229), Expect = 1.215e-19 Identity = 59/195 (30.26%), Postives = 94/195 (48.21%), Query Frame = 3
Query: 717 SSLVVGGDGIKEGTAGQPVTFHLDGRNAGPGQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLL-SGIINQFNGNFQVDSK---GAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFVAKNEQ 1289
S +V G G++ G G+ +D AGPG L + SG V I +NKDGTY V G++T+ +++ G+ +P P V++ A D +++ GPG+ + + +F VDS+ G +K I P GA E + + D + V Y P E GL+ + + D I SPF++ V + Q
Sbjct: 1134 SKVVASGPGLEHGKVGEAGLLSVDCSEAGPGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGELVPHFPARVKVEPAVDTSRIKVFGPGIEGKDVFREATTDFTVDSRPLTQVGGDHIKAHIANPSGA-STECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDVPIPNSPFKVAVTEGCQ 1327 HSP 8 Score: 92.0485 bits (227), Expect = 1.862e-19 Identity = 64/165 (38.79%), Postives = 93/165 (56.36%), Query Frame = 3
Query: 777 FHLDGRNAG-PGQLSCRCRAPSGQMTYVLISD-NKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFE 1265
F +D R AG G+L +PS ++ L++ T E GL+ V+V +DG P+PGSP+ V PD KV+AHGPGL G++ + F +D+KGAG G + + + GP A K+E DN D + +V Y P++PG Y NI + + HI GSPF+
Sbjct: 964 FTVDTRGAGGQGKLDVTILSPSRKVVPCLVTPVTGRENSTAKFIPREEGLYAVDVTYDGHPVPGSPYTVEASLPPDPSKVKAHGPGLEGGLVGK-PAEFTIDTKGAGTGGLGLTVEGPCEA-KIEC-SDN-GDGTCSVSYLPTKPGEYFVNILFEEVHIPGSPFK 1124 HSP 9 Score: 91.2781 bits (225), Expect = 3.119e-19 Identity = 55/176 (31.25%), Postives = 83/176 (47.16%), Query Frame = 3
Query: 759 AGQPVTFHLDGRNAGPGQLSCRCRAPSGQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFVAKNE 1286
A PV F +D R+AG G L+ + G+ ++ DNKDGTY V + G + + V + G IP SP+ +R Q D K A GPG+ S + F VD+K AG G + + P G +N +D + ++ Y ++PG Y + + I SPF + E
Sbjct: 1534 ASLPVDFAIDARDAGEGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGGDDIPLSPYRIRATQTGDASKCLATGPGIASTVKTGEEVGFVVDAKTAGKGKVTCTVLTPDGTEAEADVIEN-EDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTVMATDGE 1708 HSP 10 Score: 83.1889 bits (204), Expect = 1.469e-16 Identity = 59/190 (31.05%), Postives = 98/190 (51.58%), Query Frame = 3
Query: 732 GGDGIKEGTAGQPVTFHLDGRNAGPGQLSCRCRAPS-GQMTYVLISDNKDGTYTVDLNASEPGLHTVEVEWDGQPIPGSPFLVRIMQAPDMKKVRAHGPGLLSGIINQFNGNFQVDSKGAGPGTMKVRIHGPKGAFKVEMYRDNPKDRSINVRYNPSEPGLYTANIYWSDEHIVGSPFEIFVAKNEQELN 1298
GG G++ G AG P F + R AG G LS PS ++T+ D+K+G+ V A EPG + V ++++ + IP SP+LV ++ D + SG+ +F + GA G + ++H P GA + E + + VR+ P E G++T ++ ++ H+VGSPF++ V + Q N
Sbjct: 2199 GGPGLERGEAGVPAEFSIWTREAGAGGLSIAVEGPSKAEITF---DDHKNGSCGVSYIAQEPGNYEVSIKFNDEHIPESPYLVPVIAPSDDARRLTVMSLQESGLKVNQPASFAIRLNGAK-GKIDAKVHSPSGAVE-ECHVSELEPDKYAVRFIPHENGVHTIDVKFNGSHVVGSPFKVRVGEPGQAGN 2383 The following BLAST results are available for this feature:
BLAST of TCONS_00028307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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