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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028283 ID=TCONS_00028283|Name=TCONS_00028283|organism=Clytia hemisphaerica|type=transcript|length=2293bp
TAACTCGAAATTTCTTgaatcgaacaaatttgtgttccccgtgcgtgttc
aaTTTATGGAGACTCAACTATATTTGAAAGGCAGGGAGACACTGctacac
ttatgtaaaaataaaacctttaaaatattctaacaaaaaatgaagaacaa
ttttgaaaaatattttatctacTGTATTCGGTGGATAAAGGGAAAGGAGA
AGAAAAACAAGATATCTTTCCTCTTTCTCTCTAAAGATAAACCTGATACA
GTACTGTGTGGGAAGAAAGGAATAGCTGAAGAGAAGAAATCTCTAGTTTG
ATGAGGATTGGGgaaaaataacaagaaaaagACGTGCGCGTAcagaaaaa
tataaacattATATAAAAGATGACAATCAGGAGACAAAACTTACAGCATG
ATAAACAAAGATGGCTTCTAGCTTAGAATCAGAGCACTCTTTCTCATCAA
CACATACACCAAACAGTCCGCTCAAGCAGAAACAGACAACCAGGTTTTAC
AgcgctgaatatttaaaaaagaagtcCTCTTCAGGTCAGCTTTTCCAAAA
CGAACATACGGAACGGCAAACATTTAAAGAGACCAAAAACTCTCTGAAAC
TGCCTGGATATCAAACACAAAAACTTGGTGAGCCGAGACGATGTAGCAAC
GCTAGCAGCACAACTGGAAATATAATAAACACTCGAAAATACATTCGCGA
GCAATATGGGCCCTTTTTATGTTCCCTTTTACTCATATCCGCCTTTTTAG
TTATTCTTGGGGGCGGTTTAATGTTGGCGGGattttatgttcccgccctt
gAGCTAGAACGCCTTCAGGATGATACCAACTCAATGAAAATGATCGCTCT
ACAAAAAGCTGAACAACACAATAAGACATTAAACAGACTTCGAATATCGG
GTGTGTCTTTATTATCAATCGGGTTAATCGGATTAACTATCTTATTTTTA
ACACCGATTGTGTGTTTACGCCGGACAGAATACACTTTATTACCGGACGC
CGAACATTTAGGCCCACGTTCTTCATTTAGCTCGGCTTCAGGGCTACCCG
ATGACATGTTCACCTTTTCAGTAGTCAAACAACATATACAACCGAAAAAA
CAAACTCCAGGAGGATCGAACAAATCCCGAAATTCAAGATCGGGGAGACA
TCAAAAATCTGGTTACGATAAAGGCTTCTTATCTCCAGAATTAAACCGTG
GTCCAATTTTTGTTAGTGATGATAATTACAAACCGAGAAGTTACTCAAGT
AAAAATCGGAATCGTTCATCAAGTTTTGAATCCCGATTATCACCCCGATA
TTCACCACATAACCCGTGGAATAAACCAAGATATAGTATATCGGGGACTT
TGACACCCGATATTATGTTAACAAGATCGGGAGCAGTTAAAGCGGGGAGC
TTTCATAGTTTACGCtgaaacttcaaatggtaaatTTTAAATCTGTTCGC
GATAAACGTGTACTTCTTTTTGCTACCTTGTCGTAAATGTCAATTTTCAA
GACGTTGGAATTTGTACCTCCATGGCATCACAGTGTATGATTATAtatca
ttgatttcaaagcccagGGGGCTAGATTCGAAACTCAGAACTCAGAACAA
gtgacaaaatttgtaaatggGTGGCAaatttaaggcttcactttttcttg
tttgagaaaggttaaagattcctcAAACTAAATGATTATACACTGGGATA
GCCTGTGTTGGCAAACAGAGGTTTAATTTATCAGAGAAAATCCAAGATCT
TTTACCAAAACTAGCGAATCCAGTGACAAAGATATGTGAGAGTGCTTCTT
TCTTTCcgaaattgaaataaatttgttATAAACTGAATCataccatggag
gtaataaaaatctttattacctctatgatcatactggctgcgtttagacc
agcctggcatttgtaattgcttgcagtattcttttcaattctattgttcc
gcgcaattgttcggtttgtcaaatgcctaatgatgccagcgtgttggcat
ttcgttggcttttgaaatgccattttgagcaaaggaatccccttttctgg
catttcaaatcaaacaaaggaaccaaaacaaagagaaaaaatgacatttt
tgattttttaaagtatttgcacgttttcaATTccgttctttctatagatt
gtaaaatttgcaagatttgccatagcctagccctacggcaaaaagtttca
gtcttaatgactgcagtttttgagaaattccatgcttttcattgtttgat
ctgtcaaagttgaacttgagggaatcaccttttcagtaatgac Run BLAST on NCBI protein sequence of TCONS_00028283-protein >TCONS_00028283-protein ID=TCONS_00028283-protein|Name=TCONS_00028283-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MASSLESEHSFSSTHTPNSPLKQKQTTRFYSAEYLKKKSSSGQLFQNEHT
ERQTFKETKNSLKLPGYQTQKLGEPRRCSNASSTTGNIINTRKYIREQYG
PFLCSLLLISAFLVILGGGLMLAGFYVPALELERLQDDTNSMKMIALQKA
EQHNKTLNRLRISGVSLLSIGLIGLTILFLTPIVCLRRTEYTLLPDAEHL
GPRSSFSSASGLPDDMFTFSVVKQHIQPKKQTPGGSNKSRNSRSGRHQKS
GYDKGFLSPELNRGPIFVSDDNYKPRSYSSKNRNRSSSFESRLSPRYSPH
NPWNKPRYSISGTLTPDIMLTRSGAVKAGSFHSLR Run BLAST on NCBI transcript from alignment at sc0000672:5672..8058- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028283 ID=TCONS_00028283|Name=TCONS_00028283|organism=Clytia hemisphaerica|type=transcript|length=2387bp|location=Sequence derived from alignment at sc0000672:5672..8058- (Clytia hemisphaerica)
TAACTCGAAATTTCTTGAATCGAACAAATTTGTGTTCCCCGTGCGTGTTC
AATTTATGGAGACTCAACTATATTTGAAAGGCAGGGAGACACTGCTACAC
TTATGTAAAAATAAAACCTTTAAAATATTCTAACAAAAAATGAAGAACAA
TTTTGAAAAATATTTTATCTACTGTATTCGGTGGATAAAGGGAAAGGAGA
AGAAAAACAAGATATCTTTCCTCTTTCTCTCTAAAGATAAACCTGATACA
GTACTGTGTGGGAAGAAAGGAATAGCTGAAGAGAAGAAATCTCTAGTTTG
ATGAGGATTGGGGAAAAATAACAAGAAAAAGACGTGCGCGTACAGAAAAA
TATGTAAAAATATGTTAAGATTTTTAGTTTCGTTTTACGTTTGAAATAAT
ACTGTAAATTTCGGCTCAACACTCTTAAAATACTTTTTATTTTTCAGAAA
CATTATATAAAAGATGACAATCAGGAGACAAAACTTACAGCATGATAAAC
AAAGATGGCTTCTAGCTTAGAATCAGAGCACTCTTTCTCATCAACACATA
CACCAAACAGTCCGCTCAAGCAGAAACAGACAACCAGGTTTTACAGCGCT
GAATATTTAAAAAAGAAGTCCTCTTCAGGTCAGCTTTTCCAAAACGAACA
TACGGAACGGCAAACATTTAAAGAGACCAAAAACTCTCTGAAACTGCCTG
GATATCAAACACAAAAACTTGGTGAGCCGAGACGATGTAGCAACGCTAGC
AGCACAACTGGAAATATAATAAACACTCGAAAATACATTCGCGAGCAATA
TGGGCCCTTTTTATGTTCCCTTTTACTCATATCCGCCTTTTTAGTTATTC
TTGGGGGCGGTTTAATGTTGGCGGGATTTTATGTTCCCGCCCTTGAGCTA
GAACGCCTTCAGGATGATACCAACTCAATGAAAATGATCGCTCTACAAAA
AGCTGAACAACACAATAAGACATTAAACAGACTTCGAATATCGGGTGTGT
CTTTATTATCAATCGGGTTAATCGGATTAACTATCTTATTTTTAACACCG
ATTGTGTGTTTACGCCGGACAGAATACACTTTATTACCGGACGCCGAACA
TTTAGGCCCACGTTCTTCATTTAGCTCGGCTTCAGGGCTACCCGATGACA
TGTTCACCTTTTCAGTAGTCAAACAACATATACAACCGAAAAAACAAACT
CCAGGAGGATCGAACAAATCCCGAAATTCAAGATCGGGGAGACATCAAAA
ATCTGGTTACGATAAAGGCTTCTTATCTCCAGAATTAAACCGTGGTCCAA
TTTTTGTTAGTGATGATAATTACAAACCGAGAAGTTACTCAAGTAAAAAT
CGGAATCGTTCATCAAGTTTTGAATCCCGATTATCACCCCGATATTCACC
ACATAACCCGTGGAATAAACCAAGATATAGTATATCGGGGACTTTGACAC
CCGATATTATGTTAACAAGATCGGGAGCAGTTAAAGCGGGGAGCTTTCAT
AGTTTACGCTGAAACTTCAAATGGTAAATTTTAAATCTGTTCGCGATAAA
CGTGTACTTCTTTTTGCTACCTTGTCGTAAATGTCAATTTTCAAGACGTT
GGAATTTGTACCTCCATGGCATCACAGTGTATGATTATATATCATTGATT
TCAAAGCCCAGGGGGCTAGATTCGAAACTCAGAACTCAGAACAAGTGACA
AAATTTGTAAATGGGTGGCAAATTTAAGGCTTCACTTTTTCTTGTTTGAG
AAAGGTTAAAGATTCCTCAAACTAAATGATTATACACTGGGATAGCCTGT
GTTGGCAAACAGAGGTTTAATTTATCAGAGAAAATCCAAGATCTTTTACC
AAAACTAGCGAATCCAGTGACAAAGATATGTGAGAGTGCTTCTTTCTTTC
CGAAATTGAAATAAATTTGTTATAAACTGAATCATACCATGGAGGTAATA
AAAATCTTTATTACCTCTATGATCATACTGGCTGCGTTTAGACCAGCCTG
GCATTTGTAATTGCTTGCAGTATTCTTTTCAATTCTATTGTTCCGCGCAA
TTGTTCGGTTTGTCAAATGCCTAATGATGCCAGCGTGTTGGCATTTCGTT
GGCTTTTGAAATGCCATTTTGAGCAAAGGAATCCCCTTTTCTGGCATTTC
AAATCAAACAAAGGAACCAAAACAAAGAGAAAAAATGACATTTTTGATTT
TTTAAAGTATTTGCACGTTTTCAATTCCGTTCTTTCTATAGATTGTAAAA
TTTGCAAGATTTGCCATAGCCTAGCCCTACGGCAAAAAGTTTCAGTCTTA
ATGACTGCAGTTTTTGAGAAATTCCATGCTTTTCATTGTTTGATCTGTCA
AAGTTGAACTTGAGGGAATCACCTTTTCAGTAATGAC Coding sequence (CDS) from alignment at sc0000672:5672..8058- >TCONS_00028283 ID=TCONS_00028283|Name=TCONS_00028283|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0000672:5672..8058- (Clytia hemisphaerica)
ATGGCTTCTAGCTTAGAATCAGAGCACTCTTTCTCATCAACACATACACC
AAACAGTCCGCTCAAGCAGAAACAGACAACCAGGTTTTACAGCGCTGAAT
ATTTAAAAAAGAAGTCCTCTTCAGGTCAGCTTTTCCAAAACGAACATACG
GAACGGCAAACATTTAAAGAGACCAAAAACTCTCTGAAACTGCCTGGATA
TCAAACACAAAAACTTGGTGAGCCGAGACGATGTAGCAACGCTAGCAGCA
CAACTGGAAATATAATAAACACTCGAAAATACATTCGCGAGCAATATGGG
CCCTTTTTATGTTCCCTTTTACTCATATCCGCCTTTTTAGTTATTCTTGG
GGGCGGTTTAATGTTGGCGGGATTTTATGTTCCCGCCCTTGAGCTAGAAC
GCCTTCAGGATGATACCAACTCAATGAAAATGATCGCTCTACAAAAAGCT
GAACAACACAATAAGACATTAAACAGACTTCGAATATCGGGTGTGTCTTT
ATTATCAATCGGGTTAATCGGATTAACTATCTTATTTTTAACACCGATTG
TGTGTTTACGCCGGACAGAATACACTTTATTACCGGACGCCGAACATTTA
GGCCCACGTTCTTCATTTAGCTCGGCTTCAGGGCTACCCGATGACATGTT
CACCTTTTCAGTAGTCAAACAACATATACAACCGAAAAAACAAACTCCAG
GAGGATCGAACAAATCCCGAAATTCAAGATCGGGGAGACATCAAAAATCT
GGTTACGATAAAGGCTTCTTATCTCCAGAATTAAACCGTGGTCCAATTTT
TGTTAGTGATGATAATTACAAACCGAGAAGTTACTCAAGTAAAAATCGGA
ATCGTTCATCAAGTTTTGAATCCCGATTATCACCCCGATATTCACCACAT
AACCCGTGGAATAAACCAAGATATAGTATATCGGGGACTTTGACACCCGA
TATTATGTTAACAAGATCGGGAGCAGTTAAAGCGGGGAGCTTTCATAGTT
TACGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028283-exon-sc0000672-1575043694:7706..8058 | TCONS_00028283-exon-sc0000672-1575043694:7706..8058 | Clytia hemisphaerica | exon |
| TCONS_00028283-exon-sc0000672-1575043694:5672..7611 | TCONS_00028283-exon-sc0000672-1575043694:5672..7611 | Clytia hemisphaerica | exon |
| TCONS_00028283-exon-sc0000672-1510915933:7706..8058 | TCONS_00028283-exon-sc0000672-1510915933:7706..8058 | Clytia hemisphaerica | exon |
| TCONS_00028283-exon-sc0000672-1510915933:5672..7611 | TCONS_00028283-exon-sc0000672-1510915933:5672..7611 | Clytia hemisphaerica | exon |
| TCONS_00028283-exon-sc0000672-1491911889:7706..8058 | TCONS_00028283-exon-sc0000672-1491911889:7706..8058 | Clytia hemisphaerica | exon |
| TCONS_00028283-exon-sc0000672-1491911889:5672..7611 | TCONS_00028283-exon-sc0000672-1491911889:5672..7611 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000672 | supercontig | sc0000672:5672..8058 - |
Blast
The following BLAST results are available for this feature:
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