TCONS_00028237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028237
Unique NameTCONS_00028237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028237 ID=TCONS_00028237|Name=TCONS_00028237|organism=Clytia hemisphaerica|type=transcript|length=3430bp
CAAAATCGAAGGAGAGCAGCAGTAAGAAACGCAAGAGAAAGGTTGTGGTT
GAATCGTCAGATGAGGAGTCCAGCAGCAGTAATAGTAGCGTGGAAAGTGA
AAGGGGAGAAATCGAGTCGTCGTCGTCGGAAGAGGCCGAGGTGAAAAGAA
AAAGcaagaaaagaaagaagcatGATGGGGGACGTGCTGAAGAAGTTCCG
AGAATTGTTTCCAGAAATGGACGAACATCCGACAGTGGTGCCCGTAGACG
TGAAAAGTTGGATTTGGCAATAGAGAAGTACAATTCGGACGCTTTAGCCA
AAGGGACGAAAACCACGTACAGTCAAGGAGTCAAAGCATACAAGAAGTTT
GAAGCCTACATCCAAGTCAACGAAGAAAATGCCTCTCCCCCTGACCTCAA
TAGGATTTTATTATTTGTCGCTTATCTTGCTTATCATCGTAAGCTTTCTT
ATAGGTGTATTCATACTTACATGTGCAGTGTCAGAAACTGGGTGATGAAG
GCAGGAGGTCGAGATCCCTTACAATCGAAGAGGAGTCATCAGGACAGGTT
TAAGCTCAAGCAACTGTTAGCTGGCGTGAAGCGCGCAACGAGAAAAAAGC
GTAATACCAAGAAACCACTTAGAAGGAATCATATAGTCAAGAttacgaaa
aaactaaattccaCTTGCCTTTTAGACCACAATAGCAAAGTCATGTTCAA
AGCTGCGTTGCTGCTTgcctttttcggattttttagGTGCAGCGAATATA
CCCGCACAAGTTCTAACAATGACTCGTTTTTGCGTCGGAAAGATGTAAAG
GTAAAGCGTAACCAAATGAAAATAATTCTGCGAAAAACCAAGACCAACCA
GTTTGAAAGTTCCGTTGTGAAAATATACGGAAACGGGACCGAAATTTGCC
CTGTACAAGCTATGAAACAATATCTAGATATCTCTAACCACAGACGATCG
TCGTCTTTGTTTTGGAAGGACAATAAGCCTTTGAAAAGtgtcacttttaa
caaaattttgaaGGATTTACTGAAGGCAATCGGGTTAAACGTATCACATT
ATTCTTCTCATTCTTTGAGAGCTGGAGCAGCCACTACAGCTGCCAATCGT
GGCATTCCCTCTTGGTTGATCCAAAAGTTAGGAAGGTGGCATTCGAGCTG
CTACAAGATATACATTAGAAACCctgaaaaatccttaaaattggCTCAGC
TGTCTATGTCCAAATAGGGTCGGTTTTTACTTTAATAGGCTagcattgtt
tttgtttatatttaatCATACTCAAAATTCGGAGCTTcgctttaatttta
ttttttgtgtgtTGTTTTTTCAATGTCCTTGGCCAGGGCATCAggttttc
atttcttccttacAGACCTCGTAATGACAACTAGTACTTGGGAATTGTCC
ATGCGTCTCACTTTATCTTGATTACATGCGAGACTTATGTTACTTTacat
ctgttttttttttctttcgttaaagcctgattgttcttatcttttccttt
ttttttagtCTATTGCACTGTACAtaactatttttttttactaGGATAtc
gtgtttgtttgttttattttgaaataggTCTATATCTGTTTGTTTTGTTG
GGTTTTCCCCGGCATTTATATTGATTTACACTAGCTTTTTCTAATTTGAG
TTTAAAATATCATTTCACATAACTATTATAGACTGAAGTGTCTCTGTCAG
TCGGCTGACAAAGGTAGATTTGGAGTAATACAAAGTAGGATCATTGAAGG
GCATTGATTAGNNNNNNNTTTGagtttaaaatattatttcacATAACTAT
TATAGACTGAAGTGTCTCTGTCAGTCGGCTGACAAAGGTAGATTTGGAGT
AATACAAAGTAGGATCATTAAAGGGCATTGATTAGATGACTTGAATAGCC
TGTTATAACAAGACTGTAAAGTTATAAACGGCTCATGCTGCGGATCAGGG
GCAAGTTTAATATAGTTTTTCATGGCCTTTGATAGATTTAGGTTTAATAT
AAAATCGgtatataaaataataattagttTTCTATTACGTATTCTTTTGC
tacaaaattttccaagaaagagtatgtttaCATTGAGTCATTATCACACG
TAGAGCATCAGTTGTATAGATAGCTGGTCAAGACTTGGGAAGAAGGCAAG
AAAATTTAAGTTATGAAGAAAGATATTTGGTACCCCTCAATTAGCTAGCA
TGTTATAGAATGGGCAAGGATGGAGTGAACTGTAAAGGACGTACTACCAA
TAACAAGTTTTTTCATAATTACTAATGGCTAGAATTGATAGCAATGAGCA
ACTTTGGGTATCCAAATAATCCGTTTTCCCTTTCAATAAAGGGCTTGTAA
TTGTAGTTGTGATAGATTCTCCTACCGGAACGGCTGTACGGCTAGGAGTC
TCTCAGCAGCGAGGATGTTAGTGTAAATGTTCGTAGTGCATGTTGTGAGG
ATCCAGACCGGCTGTCTGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGAGATCAGATTCGGAACAAAGTCCGGCTCCTTCCC
GGCTGGTGGCGGATCTCTCTTAAGTTTCAGTATGCACAAGGTTGTGATAG
ATTCTCTTGCCGGACCGGCTGTACGGACAGGAGTTTCTCAGCTGCGAGCA
TGATACAGTAGGGAAACTGTCCATAGCGTTGATTTAGGCTTTGTGTTTTC
CATTTCATACAGCAAGAGATTTTGTCCCACACGAATTACGCGCGATGGAC
AGTTTCCTGTAGCTATTAGGCTGTGCACGGTGATGAGGGGCCAGGCCTTG
AGTCTGGGCAACCCGGCTGGTTGCGAAACCCCGCCGATTCTGGGTTTATT
CATCGTTTAGGAAGTCGGATCAGGTACATAGTCCGGCACCTACCCGGCTG
ATGGTGGACTTCCTGTCGGGTGCACATTGTTGTTTTACCTTTCTTTGTGT
GATGTAGGCGTAAAATAGTTGAAATAATTCAATATGTTATAACATATCAG
CTTTCGTTTATATTTAGTTATCTTATGTTGTTAGTATATACTTTTATTGG
CTTATCTAATTTACTCATAGAAAATTTGTACGTAGGCCCGTCTTCCTGCA
ACCTTTCAGGCGCGACGAAGTATAATTTGGGGATACCTTCGGTTGGGAAA
TATTTTATCCCCAAAATTATTTGTATAGGAGTGGTTAGCCAAATAACAAA
CGCCAAAACTTATACACTGGTTTCCCTTATCGTTCACCCACTTCTGGGCT
TTCCGTTCTGCTCACAGCGTCTTTTCCAGtagtaaaaaatagaaagttaa
aatgtcactttaattgaatcgaaatgatatacagactttatgttatgatt
ctctatcactgactctttttacaaagcattgatgactttttgtaagttgt
gttttcaacgacgggaataaaaatatcgac
Run BLAST on NCBI

protein sequence of TCONS_00028237-protein

>TCONS_00028237-protein ID=TCONS_00028237-protein|Name=TCONS_00028237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
KSKESSSKKRKRKVVVESSDEESSSSNSSVESERGEIESSSSEEAEVKRK
SKKRKKHDGGRAEEVPRIVSRNGRTSDSGARRREKLDLAIEKYNSDALAK
GTKTTYSQGVKAYKKFEAYIQVNEENASPPDLNRILLFVAYLAYHRKLSY
RCIHTYMCSVRNWVMKAGGRDPLQSKRSHQDRFKLKQLLAGVKRATRKKR
NTKKPLRRNHIVKITKKLNSTCLLDHNSKVMFKAALLLAFFGFFRCSEYT
RTSSNNDSFLRRKDVKVKRNQMKIILRKTKTNQFESSVVKIYGNGTEICP
VQAMKQYLDISNHRRSSSLFWKDNKPLKSVTFNKILKDLLKAIGLNVSHY
SSHSLRAGAATTAANRGIPSWLIQKLGRWHSSCYKIYIRNPEKSLKLAQL
SMSK
Run BLAST on NCBI

transcript from alignment at sc0000671:67655..73497+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028237 ID=TCONS_00028237|Name=TCONS_00028237|organism=Clytia hemisphaerica|type=transcript|length=5843bp|location=Sequence derived from alignment at sc0000671:67655..73497+ (Clytia hemisphaerica)
CAAAATCGAAGGAGAGCAGCAGTAAGAAACGCAAGAGAAAGGTTGTGGTT
GAATCGTCAGATGAGGAGTCCAGCAGCAGTAATAGTAGCGTGGAAAGTGA
AAGGGGAGAAATCGAGTCGTCGTCGTCGGAAGAGGCCGAGGTGAAAAGAA
AAAGcaagaaaagaaagaagcatGATGGGGGACGTGGTAAGACTACACTT
TCTTTGGTCTATAGTGTGGCACCCGCTGTGAAAAAGAAGCTTCTCCAGGG
GAAATATGTTCCNGTCTATAGTGTGGCACCCGCTGTGAAAAAGAAGCTTC
TCCAGGGGAAATATGTTTTGTATAAACTACTTCCTGGTTTTGAATCACGG
GACGAAACCGCCCACGTAATTAGTGAAGATGGTGCCTTAAAATTGAATGT
TGGGGATGGGACCAAGGAAAGACGTTTGGGTAAACAAAAACTAGATCTGG
CACAGATGATTTTGGCTTTGCAAAAGTTTAAAGACTTGGTTGTTTGTGAT
TTTCCGAATAAGGCTGCAGACATCGATAAGTACATTTCCAACATTGTTTT
GATTGCCACAAAATATAGTGGTCTAGCTTATTGGTTTTATCACGTTTATT
TTTGGGACAAGGCAGCTGAGATGTCTGACAGGGGGGAAGTTTTAAACTGG
TCGGCCTTGGATTCGGAGGCCTTGCACGCAGCGATTGCGAACGCGTCAGC
TAACTTGTGCGAGCATTGCCAGTCATTCTACCATCCATCTGGGAAGTGTC
CGTTCAACCTGAGGGTCGATTCAGTCCAGGCAATGTCGTCAAGGGTAAGT
GTCTTAGATACGGTCGATTCGGTTGATCTCGATAGGGAAAGGGGGAAGGC
ATACTATAGAGGTAAGCGCATTTGNTGTCGTCAAGGGTAAGTGTCTTAGA
TACGGTCGATTCGGTTGATCTCGATAGGGAAAGGGGGAAGGCATACTATA
GAGGTAAGCGCATTTGCAATCGTTTTAATTTTTCTGCATGTAATTTGAAA
AGCTGTGAGTTTCTTCATATATGTAGGTTTTGTAACGTTAATGGTCATGG
CATAAGGAAGTGCCCTGACGCTTCTTCAAGAAAATGACTCTCTCCAGGTA
CAGTTTCTTCTCCAATTAATGTCACTAACTTATCAGAGGAATTGAGGAAT
CATCCGGAAAGAGAGTTTGTTGAATTTTTACTACAGGGGTTTACAGAAGG
TTTTGAAATCGGTTATCATGGTCCAGACATGCATAGAATATCTCGTAACC
TAAGGTCAGCAGACGCAAATCCAGACGTCGTAGATAAGTATCTTAGTGAG
GAGGTTCAAAAGGGTAGGATTATGGGGCCTTTTAACTCTTTGCCACTTGA
AAACCTTCAATGTCAACCGATTGGGATAGTTCCCAAGAAGCAACCAGGCA
AGTTTAGAACCATAATGGATCTCTCCTACCCTGATGGTTCATCCATTAAT
GACTTCATTGACAAAGAAGAATTCTCCCTTAAATACGTCACAATTGATAA
GGCTATTGAGTTTATTCAGTTTTTAGGCCAAGGCTGCTTTCTAAGTAAGG
TCGACATAGAAGGAGCTTTTAGAATCATCCCAGTCTCACCGAACGATTTT
AATCTCTTAGGGATTTGCTGGAGGGACAGGTTTTATTACGATACAAGACT
TTCTATGGGAGGAAGATCCAGCCCCGGCTTATTTGATAAGTTTGCATGTG
CCTTGGAGTGGATAGCTGTTAACAACTATAAACTGAGTCATACTTGCCAC
CTTCTTGACGACTTCCTTACTGCTGAGGCACCTTCAGAAAAGGGAAAGGG
TTTAGAGAGGCTGTTGTATTTCTTCGACAAGTTGAATGTTCCAGTGGCTA
GTCACAAAGTAGAAGGTCCTAGTCAGAAATTGGAATTCTTGGGCATAACA
TTGGATACAGTAGCATTAGAGGCTTCTTTGTCAGAGGAGAAGATATCAAA
GCTTAAAAATGAGATTGACGAGTTTCTTTCCAAGAAGAAATGTACCAAAA
GAGAACTACTCAGCTTGATAGGGTCGCTTAGCTTTGATTGCAAGATTGTC
GTGCCAGGAAGGGTTTTCTTGCACCGCTTGATCACGTTAAGCTGTACAGT
AAAAAGATTGGACCACAAGATATACATCAATTTACCAGCTAGAGAGGACC
TTTATATGTGGCAAGAGTTCTTACGAGATTGGAATGGGAGGCAATTTTTC
TTAGATAACGATGTAAGTAAATCTTTCGATATGGAGTTTTACACAGATGC
GTCAAGTACGGTAGGATATGGTGGTTGTTTTGGGAAGCACTGGTTCTGTG
ATATGTGGGAAGAGGAAAAGATTAATCAGTTAGGCGTTTTTATGTCGGCG
AGAGAATTGTTTCCGATTTTGATTGCAGCACATTTGTGGGGAGGTGAGTG
GTCTAGGAAAAGGATTTAGGTATTTTGCGACAATGAAGGCACTGTGGCAG
TCATTAATAAGGGTTATACAAGTGAGAAACTAATGGCAAAAATGTTGAGA
AGACTGACTTTAATCAGTATGTCAAAGAATTTTTCTATAAAGGCAGTACA
TATTCCAGGGTACAAAAATGTCAAGGCTGATCTGTTATCTCGTTTACAGC
TGAAGAAGTTCCGAGAATTGTTTCCAGAAATGGACGAACATCCGACAGTG
GTGCCCGTAGACGTGAAAAGTTGGATTTGGCAATAGAGAAGTACAATTCG
GACGCTTTAGCCAAAGGGACGAAAACCACGTACAGTCAAGGAGTCAAAGC
ATACAAGAAGTTTGAAGCCTACATCCAAGTCAACGAAGAAAATGCCTCTC
CCCCTGACCTCAATAGGATTTTATTATTTGTCGCTTATCTTGCTTATCAT
CGTAAGCTTTCTTATAGGTGTATTCATACTTACATGTGCAGTGTCAGAAA
CTGGGTGATGAAGGCAGGAGGTCGAGATCCCTTACAATCGAAGAGGAGTC
ATCAGGACAGGTTTAAGCTCAAGCAACTGTTAGCTGGCGTGAAGCGCGCA
ACGAGAAAAAAGCGTAATACCAAGAAACCACTTAGAAGGAATCATATAGT
CAAGAttacgaaaaaactaaattccaCTTGCCTTTTAGACCACAATAGCA
AAGTCATGTTCAAAGCTGCGTTGCTGCTTgcctttttcggattttttagG
TGCAGCGAATATACCCGCACAAGTTCTAACAATGACTCGTTTTTGCGTCG
GAAAGATGTAAAGGTAAAGCGTAACCAAATGAAAATAATTCTGCGAAAAA
CCAAGACCAACCAGTTTGAAAGTTCCGTTGTGAAAATATACGGAAACGGG
ACCGAAATTTGCCCTGTACAAGCTATGAAACAATATCTAGATATCTCTAA
CCACAGACGATCGTCGTCTTTGTTTTGGAAGGACAATAAGCCTTTGAAAA
GtgtcacttttaacaaaattttgaaGGATTTACTGAAGGCAATCGGGTTA
AACGTATCACATTATTCTTCTCATTCTTTGAGAGCTGGAGCAGCCACTAC
AGCTGCCAATCGTGGCATTCCCTCTTGGTTGATCCAAAAGTTAGGAAGGT
GGCATTCGAGCTGCTACAAGATATACATTAGAAACCctgaaaaatcctta
aaattggCTCAGCTGTCTATGTCCAAATAGGGTCGGTTTTTACTTTAATA
GGCTagcattgtttttgtttatatttaatCATACTCAAAATTCGGAGCTT
cgctttaattttattttttgtgtgtTGTTTTTTCAATGTCCTTGGCCAGG
GCATCAggttttcatttcttccttacAGACCTCGTAATGACAACTAGTAC
TTGGGAATTGTCCATGCGTCTCACTTTATCTTGATTACATGCGAGACTTA
TGTTACTTTacatctgttttttttttctttcgttaaagcctgattgttct
tatcttttcctttttttttagtCTATTGCACTGTACAtaactattttttt
ttactaGGATAtcgtgtttgtttgttttattttgaaataggTCTATATCT
GTTTGTTTTGTTGGGTTTTCCCCGGCATTTATATTGATTTACACTAGCTT
TTTCTAATTTGAGTTTAAAATATCATTTCACATAACTATTATAGACTGAA
GTGTCTCTGTCAGTCGGCTGACAAAGGTAGATTTGGAGTAATACAAAGTA
GGATCATTGAAGGGCATTGATTAGNNNNNNNTTTGagtttaaaatattat
ttcacATAACTATTATAGACTGAAGTGTCTCTGTCAGTCGGCTGACAAAG
GTAGATTTGGAGTAATACAAAGTAGGATCATTAAAGGGCATTGATTAGAT
GACTTGAATAGCCTGTTATAACAAGACTGTAAAGTTATAAACGGCTCATG
CTGCGGATCAGGGGCAAGTTTAATATAGTTTTTCATGGCCTTTGATAGAT
TTAGGTTTAATATAAAATCGgtatataaaataataattagttTTCTATTA
CGTATTCTTTTGCtacaaaattttccaagaaagagtatgtttaCATTGAG
TCATTATCACACGTAGAGCATCAGTTGTATAGATAGCTGGTCAAGACTTG
GGAAGAAGGCAAGAAAATTTAAGTTATGAAGAAAGATATTTGGTACCCCT
CAATTAGCTAGCATGTTATAGAATGGGCAAGGATGGAGTGAACTGTAAAG
GACGTACTACCAATAACAAGTTTTTTCATAATTACTAATGGCTAGAATTG
ATAGCAATGAGCAACTTTGGGTATCCAAATAATCCGTTTTCCCTTTCAAT
AAAGGGCTTGTAATTGTAGTTGTGATAGATTCTCCTACCGGAACGGCTGT
ACGGCTAGGAGTCTCTCAGCAGCGAGGATGTTAGTGTAAATGTTCGTAGT
GCATGTTGTGAGGATCCAGACCGGCTGTCTGGGCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGATCAGATTCGGAACAAAGT
CCGGCTCCTTCCCGGCTGGTGGCGGATCTCTCTTAAGTTTCAGTATGCAC
AAGGTTGTGATAGATTCTCTTGCCGGACCGGCTGTACGGACAGGAGTTTC
TCAGCTGCGAGCATGATACAGTAGGGAAACTGTCCATAGCGTTGATTTAG
GCTTTGTGTTTTCCATTTCATACAGCAAGAGATTTTGTCCCACACGAATT
ACGCGCGATGGACAGTTTCCTGTAGCTATTAGGCTGTGCACGGTGATGAG
GGGCCAGGCCTTGAGTCTGGGCAACCCGGCTGGTTGCGAAACCCCGCCGA
TTCTGGGTTTATTCATCGTTTAGGAAGTCGGATCAGGTACATAGTCCGGC
ACCTACCCGGCTGATGGTGGACTTCCTGTCGGGTGCACATTGTTGTTTTA
CCTTTCTTTGTGTGATGTAGGCGTAAAATAGTTGAAATAATTCAATATGT
TATAACATATCAGCTTTCGTTTATATTTAGTTATCTTATGTTGTTAGTAT
ATACTTTTATTGGCTTATCTAATTTACTCATAGAAAATTTGTACGTAGGC
CCGTCTTCCTGCAACCTTTCAGGCGCGACGAAGTATAATTTGGGGATACC
TTCGGTTGGGAAATATTTTATCCCCAAAATTATTTGTATAGGAGTGGTTA
GCCAAATAACAAACGCCAAAACTTATACACTGGTTTCCCTTATCGTTCAC
CCACTTCTGGGCTTTCCGTTCTGCTCACAGCGTCTTTTCCAGtagtaaaa
aatagaaagttaaaatgtcactttaattgaatcgaaatgatatacagact
ttatgttatgattctctatcactgactctttttacaaagcattgatgact
ttttgtaagttgtgttttcaacgacgggaataaaaatatcgac

Coding sequence (CDS) from alignment at sc0000671:67655..73497+

>TCONS_00028237 ID=TCONS_00028237|Name=TCONS_00028237|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at sc0000671:67655..73497+ (Clytia hemisphaerica)
AAATCGAAGGAGAGCAGCAGTAAGAAACGCAAGAGAAAGGTTGTGGTTGA
ATCGTCAGATGAGGAGTCCAGCAGCAGTAATAGTAGCGTGGAAAGTGAAA
GGGGAGAAATCGAGTCGTCGTCGTCGGAAGAGGCCGAGGTGAAAAGAAAA
AGcaagaaaagaaagaagcatGATGGGGGACGTGCTGAAGAAGTTCCGAG
AATTGTTTCCAGAAATGGACGAACATCCGACAGTGGTGCCCGTAGACGTG
AAAAGTTGGATTTGGCAATAGAGAAGTACAATTCGGACGCTTTAGCCAAA
GGGACGAAAACCACGTACAGTCAAGGAGTCAAAGCATACAAGAAGTTTGA
AGCCTACATCCAAGTCAACGAAGAAAATGCCTCTCCCCCTGACCTCAATA
GGATTTTATTATTTGTCGCTTATCTTGCTTATCATCGTAAGCTTTCTTAT
AGGTGTATTCATACTTACATGTGCAGTGTCAGAAACTGGGTGATGAAGGC
AGGAGGTCGAGATCCCTTACAATCGAAGAGGAGTCATCAGGACAGGTTTA
AGCTCAAGCAACTGTTAGCTGGCGTGAAGCGCGCAACGAGAAAAAAGCGT
AATACCAAGAAACCACTTAGAAGGAATCATATAGTCAAGAttacgaaaaa
actaaattccaCTTGCCTTTTAGACCACAATAGCAAAGTCATGTTCAAAG
CTGCGTTGCTGCTTgcctttttcggattttttagGTGCAGCGAATATACC
CGCACAAGTTCTAACAATGACTCGTTTTTGCGTCGGAAAGATGTAAAGGT
AAAGCGTAACCAAATGAAAATAATTCTGCGAAAAACCAAGACCAACCAGT
TTGAAAGTTCCGTTGTGAAAATATACGGAAACGGGACCGAAATTTGCCCT
GTACAAGCTATGAAACAATATCTAGATATCTCTAACCACAGACGATCGTC
GTCTTTGTTTTGGAAGGACAATAAGCCTTTGAAAAGtgtcacttttaaca
aaattttgaaGGATTTACTGAAGGCAATCGGGTTAAACGTATCACATTAT
TCTTCTCATTCTTTGAGAGCTGGAGCAGCCACTACAGCTGCCAATCGTGG
CATTCCCTCTTGGTTGATCCAAAAGTTAGGAAGGTGGCATTCGAGCTGCT
ACAAGATATACATTAGAAACCctgaaaaatccttaaaattggCTCAGCTG
TCTATGTCCAAATAGAAATCGAAGGAGAGCAGCAGTAAGAAACGCAAGAG
AAAGGTTGTGGTTGAATCGTCAGATGAGGAGTCCAGCAGCAGTAATAGTA
GCGTGGAAAGTGAAAGGGGAGAAATCGAGTCGTCGTCGTCGGAAGAGGCC
GAGGTGAAAAGAAAAAGcaagaaaagaaagaagcatGATGGGGGACGTGC
TGAAGAAGTTCCGAGAATTGTTTCCAGAAATGGACGAACATCCGACAGTG
GTGCCCGTAGACGTGAAAAGTTGGATTTGGCAATAGAGAAGTACAATTCG
GACGCTTTAGCCAAAGGGACGAAAACCACGTACAGTCAAGGAGTCAAAGC
ATACAAGAAGTTTGAAGCCTACATCCAAGTCAACGAAGAAAATGCCTCTC
CCCCTGACCTCAATAGGATTTTATTATTTGTCGCTTATCTTGCTTATCAT
CGTAAGCTTTCTTATAGGTGTATTCATACTTACATGTGCAGTGTCAGAAA
CTGGGTGATGAAGGCAGGAGGTCGAGATCCCTTACAATCGAAGAGGAGTC
ATCAGGACAGGTTTAAGCTCAAGCAACTGTTAGCTGGCGTGAAGCGCGCA
ACGAGAAAAAAGCGTAATACCAAGAAACCACTTAGAAGGAATCATATAGT
CAAGAttacgaaaaaactaaattccaCTTGCCTTTTAGACCACAATAGCA
AAGTCATGTTCAAAGCTGCGTTGCTGCTTgcctttttcggattttttagG
TGCAGCGAATATACCCGCACAAGTTCTAACAATGACTCGTTTTTGCGTCG
GAAAGATGTAAAGGTAAAGCGTAACCAAATGAAAATAATTCTGCGAAAAA
CCAAGACCAACCAGTTTGAAAGTTCCGTTGTGAAAATATACGGAAACGGG
ACCGAAATTTGCCCTGTACAAGCTATGAAACAATATCTAGATATCTCTAA
CCACAGACGATCGTCGTCTTTGTTTTGGAAGGACAATAAGCCTTTGAAAA
GtgtcacttttaacaaaattttgaaGGATTTACTGAAGGCAATCGGGTTA
AACGTATCACATTATTCTTCTCATTCTTTGAGAGCTGGAGCAGCCACTAC
AGCTGCCAATCGTGGCATTCCCTCTTGGTTGATCCAAAAGTTAGGAAGGT
GGCATTCGAGCTGCTACAAGATATACATTAGAAACCctgaaaaatcctta
aaattggCTCAGCTGTCTATGTCCAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015990XLOC_015990Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028237-proteinTCONS_00028237-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028237-exon-sc0000671-1491911889:67655..67840TCONS_00028237-exon-sc0000671-1491911889:67655..67840Clytia hemisphaericaexon
TCONS_00028237-exon-sc0000671-1510915933:67655..67840TCONS_00028237-exon-sc0000671-1510915933:67655..67840Clytia hemisphaericaexon
TCONS_00028237-exon-sc0000671-1575043694:67655..67840TCONS_00028237-exon-sc0000671-1575043694:67655..67840Clytia hemisphaericaexon
TCONS_00028237-exon-sc0000671-1491911889:70254..73497TCONS_00028237-exon-sc0000671-1491911889:70254..73497Clytia hemisphaericaexon
TCONS_00028237-exon-sc0000671-1510915933:70254..73497TCONS_00028237-exon-sc0000671-1510915933:70254..73497Clytia hemisphaericaexon
TCONS_00028237-exon-sc0000671-1575043694:70254..73497TCONS_00028237-exon-sc0000671-1575043694:70254..73497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000671supercontigsc0000671:67655..73497 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0692515	0.35066	0	0.247744	0.144041	0.0991982	0	0	0.31323	0.0702939	0.140075	0.17755	0	0.655358	1.90255e-10	0	0.202011	0.170965	0.417968	0.559719	1.15071	0.926121	1.45056e-10	0.21846	0.323657	0.264495	1.03453	0.39548	0.377415	0.495196
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002104Integrase_catalytic
IPR013762Integrase-like_cat
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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