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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028246 ID=TCONS_00028246|Name=TCONS_00028246|organism=Clytia hemisphaerica|type=transcript|length=3172bp
TGAAACCTTATGATCAAACCGGGGGATTTATTTCGGTCAGTTCATATCTG
TTTACTGGTCATAAACACTTTGAACAGGGAGCTGGGGTCATACTAAATGA
CATAACGCCATAATAAGTAGTAGCTGTTTCTTTAAAGCCAACAGTTTTAT
ACCACACCACCATCTCTTTGCAGCTTTCCTGAAGTAAATCTAGGGTATCA
CAccctagcctggatatctagACCGTAAACTTTCACtatctagtttttta
taatcttgtctctggtttactgTCTCTGGTTCaactaactcgtctgcagg
gatattcGTCTGTCCATCCCCTGTTTGTGAATACGTTTGTTGGGTCTACA
TTCATTTGTACCTTTTCTTTGCTTCAATAGGTGGTACTACCCAGCTAACT
GCTGGTACAagcaaatatgaaaaaatacttGTACTACCCAGCTCACTGCT
GGTACAATCAAATGTGAGAAAGTACTTGTATTACCCAGCTCACTGCTGGT
ACAATCAAAAGAATGCTGGAAGAAAACATACGGACGTTAGTACGGTCAAG
AcaaagatttgacgtcaaatcacattagagctgacagttagttgatCTTA
AAGCggttgtatttctttgtgtgttttagtcagagagttgttgtaataca
atttTTGCTCAGAACTtcatgctctatcagatggtaccaaccattttcgt
ttgttttgacttttgaaaataagctattttcctaccccttattttccctt
gcagttttgccaatggcgtcactattttggtcataaaaagtttacCGGGC
CTAATctgcgtcctccctctcaaaaatatcttgtaatatactgttatttg
gaatagactaaaaatgattaggtcgtagaaaaaatgtcacggaaccccag
gcttggcctCCTACTAAGTAGGAAACAGAAAGTGCATTAGACTACTATAA
AATAACCGATTTTGCTCGATTATTCAAGCTTtcttgtcaaaaaaaaagtg
gAGGCAAGGATGTATTGGTCGCCAATAACAACATGAATTCTAGCTTGAAG
TCATGTCtgcataaattttcaaatttaatctttcaGGCTTGAGGTCGGGC
GTATCCGCCATTTTGTAAAAAGGCGGGTGACAGAGATAGAACTGCGATTG
TTCCGCGAAAACGATAGAAATACAATAGAAATGACCCAACCCAGTCGTCC
TCTATCCAGCTACGCTTTATCATTTCCCTGATGATAGTACCTAAAAAGTg
actcgattttcgaaaaaagaatattttgggctaattattttatgaaattg
tttgcattaattttttcaatttttttgcataaagatgaagggaaaggttc
tctaaaaagtagCTGCAGCcgtttttttccgaaaaatttcttttggccgt
aaaaaacggatttatttatttggggaaattcccttttgtcatttttatgg
AAAATATGGATTTCTTGCGATTgacttggtatttttttcttattttttgc
acaatgatgtaaaatggtaatgttTAAAACCTGATGGAGCCCGATAttcg
aaaaaacaaattttgcgcaaatttgggccaaaaagtgcctaaaaatgtgG
CTTCcagagccgcatgggcttacgctataagcttacagcgctttactgga
gccttagttggtaggactttaaaatttaaagaatcAATGTTTCTGTAggc
attttttggactttgtgtgaaattgcttcatttgctttttcttatttttt
tgcatgGTGTAAAAGggcaaggttttctaaaaagtggctgaatctgtttt
tttggaaatgctTTTTGGACCCTAAAAAtaggattttcttatttggggaa
atttccttttgtcatatttagggaaaataACAAAGCGTTCTTCCTCACGA
TTTATCTGACTATCGACTTTTGGACAGCAGTTCTCTTGTTTTGGTCAACA
TTCATTCAGCATTCACTCTTTCTATAAACAGCTCAATTTACGCTCAATTA
CTTCCTTTCCAGATCTTCGTCAACTCTCTTTTCGAGTTTAACTACGGGGT
CTGGTTACTCGTACTTATATTTCAGTCCGCGCGCTCAAAGTTGGGCGGAT
GACGGGTGTTTCAACACCCTTGACAGAATCATTTTGGATTTTGTCCTCAT
TATCTAGTTCAGTTTCATAACGTAACGGGGAGCCAGCCCTACTAGTAGAG
TCAGGCGAAGGAGGGTTCAGGGCCGAAATTGAAAAGTCTCCAACTGTCTC
CAGCTTTTCTTTTCTTGGCTTGGCTTTTTCGATCCACCATTTTTTGCTCT
CGCTCTTAACTTCTTTGCCAACCATGcctaatacaaaaataaaacaagag
aTGAGAATTGAAAATTGAGTGGATTGAGATAAGTGGGAAGTGAATTTGAT
GCACACCagataaaaattttatcagaAACTCAATATGGCAAACATTCCTA
TTAGGAattttgggaaattattatagTGCAATTTTGTTACATTACTCTTC
CACAGCTAAGAGCCTCATTCAAATCATTTGTTACATGGAAACCAAAGGAA
AGAACAGATAAccaataaaaaagttttgaaaagggACATTTTGGGGATAT
CCAGACTATATTAAAGGTAGAAAAAGGTGTTTTTAAGTGTACCTAGTTAG
AGCGCAGAATTTTAGGTGTTTAATTTCATAACTAGATGATTTTTCATATT
TAGCCTACAGACTCCCTCTATAGACCTGAGAAAAAGCTCCAAATCTTTTG
ACATAATTTTTGAAAGCCAAGATACATGGCAATGCAAGAAAATTATCCTT
ATTGTGAGAGCTCTACTTACATATTCATAGAGATCATCCTTTCCATAATT
TAAGTTTGGAAACTTCGACACTAAAGATTGCGCAACTTTTtggttttcga
ttttttttgtctgtatgcttcatttttcatcatggTTATTTAGTCTCTGA
CATGGCATTCATTGTCAGTGGCATTCAATGGTGGTTCATCAACAGGGCCA
ATTTCAACAGCACGAATAAACTCTTCATCTTGGTTAATTGAATACTTAGG
GCCAATTATACTGGACATACagaatttcatcattttcagtGCTAATCTTG
TCAGTGTTATGACGAAATCCAACTTTAGGTCTCTTTGGTTCTTCTTCCTC
ATCACTGGAAGCTTGCACTTGC Run BLAST on NCBI transcript from alignment at sc0000671:19509..22680- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028246 ID=TCONS_00028246|Name=TCONS_00028246|organism=Clytia hemisphaerica|type=transcript|length=3172bp|location=Sequence derived from alignment at sc0000671:19509..22680- (Clytia hemisphaerica)
TGAAACCTTATGATCAAACCGGGGGATTTATTTCGGTCAGTTCATATCTG
TTTACTGGTCATAAACACTTTGAACAGGGAGCTGGGGTCATACTAAATGA
CATAACGCCATAATAAGTAGTAGCTGTTTCTTTAAAGCCAACAGTTTTAT
ACCACACCACCATCTCTTTGCAGCTTTCCTGAAGTAAATCTAGGGTATCA
CACCCTAGCCTGGATATCTAGACCGTAAACTTTCACTATCTAGTTTTTTA
TAATCTTGTCTCTGGTTTACTGTCTCTGGTTCAACTAACTCGTCTGCAGG
GATATTCGTCTGTCCATCCCCTGTTTGTGAATACGTTTGTTGGGTCTACA
TTCATTTGTACCTTTTCTTTGCTTCAATAGGTGGTACTACCCAGCTAACT
GCTGGTACAAGCAAATATGAAAAAATACTTGTACTACCCAGCTCACTGCT
GGTACAATCAAATGTGAGAAAGTACTTGTATTACCCAGCTCACTGCTGGT
ACAATCAAAAGAATGCTGGAAGAAAACATACGGACGTTAGTACGGTCAAG
ACAAAGATTTGACGTCAAATCACATTAGAGCTGACAGTTAGTTGATCTTA
AAGCGGTTGTATTTCTTTGTGTGTTTTAGTCAGAGAGTTGTTGTAATACA
ATTTTTGCTCAGAACTTCATGCTCTATCAGATGGTACCAACCATTTTCGT
TTGTTTTGACTTTTGAAAATAAGCTATTTTCCTACCCCTTATTTTCCCTT
GCAGTTTTGCCAATGGCGTCACTATTTTGGTCATAAAAAGTTTACCGGGC
CTAATCTGCGTCCTCCCTCTCAAAAATATCTTGTAATATACTGTTATTTG
GAATAGACTAAAAATGATTAGGTCGTAGAAAAAATGTCACGGAACCCCAG
GCTTGGCCTCCTACTAAGTAGGAAACAGAAAGTGCATTAGACTACTATAA
AATAACCGATTTTGCTCGATTATTCAAGCTTTCTTGTCAAAAAAAAAGTG
GAGGCAAGGATGTATTGGTCGCCAATAACAACATGAATTCTAGCTTGAAG
TCATGTCTGCATAAATTTTCAAATTTAATCTTTCAGGCTTGAGGTCGGGC
GTATCCGCCATTTTGTAAAAAGGCGGGTGACAGAGATAGAACTGCGATTG
TTCCGCGAAAACGATAGAAATACAATAGAAATGACCCAACCCAGTCGTCC
TCTATCCAGCTACGCTTTATCATTTCCCTGATGATAGTACCTAAAAAGTG
ACTCGATTTTCGAAAAAAGAATATTTTGGGCTAATTATTTTATGAAATTG
TTTGCATTAATTTTTTCAATTTTTTTGCATAAAGATGAAGGGAAAGGTTC
TCTAAAAAGTAGCTGCAGCCGTTTTTTTCCGAAAAATTTCTTTTGGCCGT
AAAAAACGGATTTATTTATTTGGGGAAATTCCCTTTTGTCATTTTTATGG
AAAATATGGATTTCTTGCGATTGACTTGGTATTTTTTTCTTATTTTTTGC
ACAATGATGTAAAATGGTAATGTTTAAAACCTGATGGAGCCCGATATTCG
AAAAAACAAATTTTGCGCAAATTTGGGCCAAAAAGTGCCTAAAAATGTGG
CTTCCAGAGCCGCATGGGCTTACGCTATAAGCTTACAGCGCTTTACTGGA
GCCTTAGTTGGTAGGACTTTAAAATTTAAAGAATCAATGTTTCTGTAGGC
ATTTTTTGGACTTTGTGTGAAATTGCTTCATTTGCTTTTTCTTATTTTTT
TGCATGGTGTAAAAGGGCAAGGTTTTCTAAAAAGTGGCTGAATCTGTTTT
TTTGGAAATGCTTTTTGGACCCTAAAAATAGGATTTTCTTATTTGGGGAA
ATTTCCTTTTGTCATATTTAGGGAAAATAACAAAGCGTTCTTCCTCACGA
TTTATCTGACTATCGACTTTTGGACAGCAGTTCTCTTGTTTTGGTCAACA
TTCATTCAGCATTCACTCTTTCTATAAACAGCTCAATTTACGCTCAATTA
CTTCCTTTCCAGATCTTCGTCAACTCTCTTTTCGAGTTTAACTACGGGGT
CTGGTTACTCGTACTTATATTTCAGTCCGCGCGCTCAAAGTTGGGCGGAT
GACGGGTGTTTCAACACCCTTGACAGAATCATTTTGGATTTTGTCCTCAT
TATCTAGTTCAGTTTCATAACGTAACGGGGAGCCAGCCCTACTAGTAGAG
TCAGGCGAAGGAGGGTTCAGGGCCGAAATTGAAAAGTCTCCAACTGTCTC
CAGCTTTTCTTTTCTTGGCTTGGCTTTTTCGATCCACCATTTTTTGCTCT
CGCTCTTAACTTCTTTGCCAACCATGCCTAATACAAAAATAAAACAAGAG
ATGAGAATTGAAAATTGAGTGGATTGAGATAAGTGGGAAGTGAATTTGAT
GCACACCAGATAAAAATTTTATCAGAAACTCAATATGGCAAACATTCCTA
TTAGGAATTTTGGGAAATTATTATAGTGCAATTTTGTTACATTACTCTTC
CACAGCTAAGAGCCTCATTCAAATCATTTGTTACATGGAAACCAAAGGAA
AGAACAGATAACCAATAAAAAAGTTTTGAAAAGGGACATTTTGGGGATAT
CCAGACTATATTAAAGGTAGAAAAAGGTGTTTTTAAGTGTACCTAGTTAG
AGCGCAGAATTTTAGGTGTTTAATTTCATAACTAGATGATTTTTCATATT
TAGCCTACAGACTCCCTCTATAGACCTGAGAAAAAGCTCCAAATCTTTTG
ACATAATTTTTGAAAGCCAAGATACATGGCAATGCAAGAAAATTATCCTT
ATTGTGAGAGCTCTACTTACATATTCATAGAGATCATCCTTTCCATAATT
TAAGTTTGGAAACTTCGACACTAAAGATTGCGCAACTTTTTGGTTTTCGA
TTTTTTTTGTCTGTATGCTTCATTTTTCATCATGGTTATTTAGTCTCTGA
CATGGCATTCATTGTCAGTGGCATTCAATGGTGGTTCATCAACAGGGCCA
ATTTCAACAGCACGAATAAACTCTTCATCTTGGTTAATTGAATACTTAGG
GCCAATTATACTGGACATACAGAATTTCATCATTTTCAGTGCTAATCTTG
TCAGTGTTATGACGAAATCCAACTTTAGGTCTCTTTGGTTCTTCTTCCTC
ATCACTGGAAGCTTGCACTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028246-exon-sc0000671-1575043694:19509..22680 | TCONS_00028246-exon-sc0000671-1575043694:19509..22680 | Clytia hemisphaerica | exon |
| TCONS_00028246-exon-sc0000671-1510915933:19509..22680 | TCONS_00028246-exon-sc0000671-1510915933:19509..22680 | Clytia hemisphaerica | exon |
| TCONS_00028246-exon-sc0000671-1491911889:19509..22680 | TCONS_00028246-exon-sc0000671-1491911889:19509..22680 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000671 | supercontig | sc0000671:19509..22680 - |
Blast
The following BLAST results are available for this feature:
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