TCONS_00028211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028211
Unique NameTCONS_00028211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028211 ID=TCONS_00028211|Name=TCONS_00028211|organism=Clytia hemisphaerica|type=transcript|length=1882bp
ttgtctcgatccgcCGTCGAATATAGAGTTGAAGAGATAAAATTCTGTTT
TTGTTGGATTTCAAGTAAATGTAACGATGGCATCACAAAAAAAGATTGAC
GTTGATGATTGGAGAATGAACAATGCCCACAGCGAAAGGATACTTGATCC
ACAAAATGCTGCCGGAGCTCGTGGAGATTTACATAAGGATACGAACTCCA
ACGGTAATGAAGCTAACCTGCTTAAAGAAGAAATCAAACATTTGAAAATG
CAAAACGACATGGGAAAATTGAGACTTGAAAATTACaatttgaaaaagga
aaatgaaattaagGATCTTAAATTAaagcttgaaaatgaaattaaccAGT
TACGTAAtgaaaacgaaattttaaaattaagatCAGAGAATGCTCTACTG
AAAGCTGAGAAACAATTTGGTATTGAAAAGGATGTCTTGATTGCGGAGAA
AATGACATTGGAGCAAGATGTGAAAGctttaaaagcaaaaaatgaagaat
taaaGCGAAGCAGTGGAAATGAAATTAACCTCGAGATGGAAAAACTTTCA
AAGGATATTTTGAAGTGCCGAGAAGAAAAGCGTGAAATGGAAACAAAATA
TGAACTTTTGAAAGCTGACAAAATAAAAGAGGGCGGTTCACCTCAAAAAT
TGACAGTTGAGAACAAAGTGATGAAGGATGAACTGGAAATAATGACAAAC
AAGTTTCATGAAACGGAAGAGAAGCTGAAAGAAATGGTGAACCTATATAC
AGTAGCAcctaattttgaaaatatgggTAAAATCGATTTGGTAAAATTTG
CCGCTCAAGTGCTAGTCAAACAAATTCCTTATCCGCATCATGCAAATATG
TACAAAGCATTAAGAAGTTTAGAAGTACCTTGTTCAACAGGCAAAACCTA
TATTTTCACCGATACATCTCGGAAAGTATGGCCTAATGGAACTGGTCTTC
ATATACATATGCGTGACTTCATCGCGAATTGGCATGATATAGAGAAAGCT
AAAGTTCTGCACCCGACTGATAATCTCAAATCCttaactttaaagaaaaa
cgACCACCACGGCAATTggttttttgaaagtgataatgatttttttgtat
GTGGATATGATAATATTGTGTGCGTGGTACTTGTCGaggtaaaataattt
ttcaattgtcatatttttttattttcgggGACTTATTAGATTAGAGTCTA
CTTCTAACTTCTAACTGAACTGTTTTGCAGTCCGCCTAAGCTTTTTTAAC
ATATGCTACTGGgtcacttaatcgcgccatccagtctatcaataAGCTTC
AGGTCtcacactctgtgcgcattgtctgtttgataaaaaattcccgtatg
gagacctctgcgatgaagtatgatttataaatagcataacttctctcatc
gtctcccctctttcaccagcactccatcgcagcggtcggtttgaaaaatc
tcaaatgagaaaagacaatgacaataGTCCCTCTACGgcaatagattttt
aaattagccgtagatactgggtctgtgtacagacaaagtGGACCCCGGGT
AATGTATTCATAAGATTTGTAGGAGGAGAATTATTTTGTATAACTGAAAT
GTTTTATATGAGAGTGAAAGTAATTTTCATGTAATTTGTAGGGTAAATTT
GAATCTTAATTATACTTTAATATAGTATTTTTGTATTATGCTGGGTTTTT
GTTACATCTTgaaacccccttctcacagacccactgggaacccttttTGC
TTGaacaaaatggccaaaataccGTCCCTTATGGAAAGTTATGGTTATAT
TCATGATGAAAGCTATCCTTActaaatattatgctatttttcctatcccc
actgaattGCATACAAATAAATCTAAGTCCCC
Run BLAST on NCBI

protein sequence of TCONS_00028211-protein

>TCONS_00028211-protein ID=TCONS_00028211-protein|Name=TCONS_00028211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MASQKKIDVDDWRMNNAHSERILDPQNAAGARGDLHKDTNSNGNEANLLK
EEIKHLKMQNDMGKLRLENYNLKKENEIKDLKLKLENEINQLRNENEILK
LRSENALLKAEKQFGIEKDVLIAEKMTLEQDVKALKAKNEELKRSSGNEI
NLEMEKLSKDILKCREEKREMETKYELLKADKIKEGGSPQKLTVENKVMK
DELEIMTNKFHETEEKLKEMVNLYTVAPNFENMGKIDLVKFAAQVLVKQI
PYPHHANMYKALRSLEVPCSTGKTYIFTDTSRKVWPNGTGLHIHMRDFIA
NWHDIEKAKVLHPTDNLKSLTLKKNDHHGNWFFESDNDFFVCGYDNIVCV
VLVEVK
Run BLAST on NCBI

transcript from alignment at sc0000670:96424..99180-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028211 ID=TCONS_00028211|Name=TCONS_00028211|organism=Clytia hemisphaerica|type=transcript|length=2757bp|location=Sequence derived from alignment at sc0000670:96424..99180- (Clytia hemisphaerica)
TTGTCTCGATCCGCCGTCGAATATAGAGTTGAAGAGGTATTTTCAATTTC
AGTTGAGCTAGAATCTGAGAATGTCCGTCTGTCAGTTATCTGACAGATGG
TGAAATTTTCATCCGATACGCTAAACACTGAAGGAAAAAAATTCAACATC
TGGAAAGTTTACATTACGGAACTTTGCAAGACTGCGTCAAGGGTTTTGCT
GCGGGAGGTCTGGTAACCCATCCCTCGTTTTTAGGGATTGGCAGGTCCAA
CCGAAATATTTTTAGCTTTAAGTGCAAGGGTAGTTGACCCTGACTGGGGA
TGCGGCACATCAAAGGCCGATTATTATTCCTCTCCGATGGAAAATTGGCC
CGCTCCTTTAGAGCTTTAGCGTGTGGGTGGCCGTTAATCCGCCATCGGAA
TATCAGATAAGTCTGTCAGTCTATGTGTATCAGTCCATGTGTGTCTGTCT
GTCACTTCAAAACTTTAGGGCAGGCTGGAGATTTCAAAAATGGTCGAATT
TGGCTGAAATCTTGCACACTTGTTCCTTGGTTCCTTTGTATTTTTTTGAT
TTTGGCTTAAAATCTCGCTTTTGCATTTTTGAATTTTTTTATTTGCTTGA
CCATGAAGCACAATCCAATTCCTACGAGTTAGACCTCGCCCTCCTATATA
GTCCATGTCCAATATACTCGATATTGACACTTAAAGGGTTAAGCAGTGAT
TACTATTACAGATAGTGATGTGAGTTTTTCTTTATTGGTAAATTTAGCAG
TTTGAAACCTGAATGTAAATGTAACTAGATTCCTTTGTAACTAGATTCCT
TTCGTTCCTGTATTTGACCTACTTTCATGTTATCTGCTTTGTCTGTTGGT
TAGATGTGTCCATGGTTTTATTATTTGTACCATAACTATTTTGTCATGTC
ATTTCATATAGATAAAATTCTGTTTTTGTTGGATTTCAAGTAAATGTAAC
GATGGCATCACAAAAAAAGATTGACGTTGATGATTGGAGAATGAACAATG
CCCACAGCGAAAGGATACTTGATCCACAAAATGCTGCCGGAGCTCGTGGA
GATTTACATAAGGATACGAACTCCAACGGTAATGAAGCTAACCTGCTTAA
AGAAGAAATCAAACATTTGAAAATGCAAAACGACATGGGAAAATTGAGAC
TTGAAAATTACAATTTGAAAAAGGAAAATGAAATTAAGGATCTTAAATTA
AAGCTTGAAAATGAAATTAACCAGTTACGTAATGAAAACGAAATTTTAAA
ATTAAGATCAGAGAATGCTCTACTGAAAGCTGAGAAACAATTTGGTATTG
AAAAGGATGTCTTGATTGCGGAGAAAATGACATTGGAGCAAGATGTGAAA
GCTTTAAAAGCAAAAAATGAAGAATTAAAGCGAAGCAGTGGAAATGAAAT
TAACCTCGAGATGGAAAAACTTTCAAAGGATATTTTGAAGTGCCGAGAAG
AAAAGCGTGAAATGGAAACAAAATATGAACTTTTGAAAGCTGACAAAATA
AAAGAGGGCGGTTCACCTCAAAAATTGACAGTTGAGAACAAAGTGATGAA
GGATGAACTGGAAATAATGACAAACAAGTTTCATGAAACGGAAGAGAAGC
TGAAAGAAATGGTGAACCTATATACAGTAGCACCTAATTTTGAAAATATG
GGTAAAATCGATTTGGTAAAATTTGCCGCTCAAGTGCTAGTCAAACAAAT
TCCTTATCCGCATCATGCAAATATGTACAAAGCATTAAGAAGTTTAGAAG
TACCTTGTTCAACAGGCAAAACCTATATTTTCACCGATACATCTCGGAAA
GTATGGCCTAATGGAACTGGTCTTCATATACATATGCGTGACTTCATCGC
GAATTGGCATGATATAGAGAAAGCTAAAGTTCTGCACCCGACTGATAATC
TCAAATCCTTAACTTTAAAGAAAAACGACCACCACGGCAATTGGTTTTTT
GAAAGTGATAATGATTTTTTTGTATGTGGATATGATAATATTGTGTGCGT
GGTACTTGTCGAGGTAAAATAATTTTTCAATTGTCATATTTTTTTATTTT
CGGGGACTTATTAGATTAGAGTCTACTTCTAACTTCTAACTGAACTGTTT
TGCAGTCCGCCTAAGCTTTTTTAACATATGCTACTGGGTCACTTAATCGC
GCCATCCAGTCTATCAATAAGCTTCAGGTCTCACACTCTGTGCGCATTGT
CTGTTTGATAAAAAATTCCCGTATGGAGACCTCTGCGATGAAGTATGATT
TATAAATAGCATAACTTCTCTCATCGTCTCCCCTCTTTCACCAGCACTCC
ATCGCAGCGGTCGGTTTGAAAAATCTCAAATGAGAAAAGACAATGACAAT
AGTCCCTCTACGGCAATAGATTTTTAAATTAGCCGTAGATACTGGGTCTG
TGTACAGACAAAGTGGACCCCGGGTAATGTATTCATAAGATTTGTAGGAG
GAGAATTATTTTGTATAACTGAAATGTTTTATATGAGAGTGAAAGTAATT
TTCATGTAATTTGTAGGGTAAATTTGAATCTTAATTATACTTTAATATAG
TATTTTTGTATTATGCTGGGTTTTTGTTACATCTTGAAACCCCCTTCTCA
CAGACCCACTGGGAACCCTTTTTGCTTGAACAAAATGGCCAAAATACCGT
CCCTTATGGAAAGTTATGGTTATATTCATGATGAAAGCTATCCTTACTAA
ATATTATGCTATTTTTCCTATCCCCACTGAATTGCATACAAATAAATCTA
AGTCCCC

Coding sequence (CDS) from alignment at sc0000670:96424..99180-

>TCONS_00028211 ID=TCONS_00028211|Name=TCONS_00028211|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at sc0000670:96424..99180- (Clytia hemisphaerica)
ATGGCATCACAAAAAAAGATTGACGTTGATGATTGGAGAATGAACAATGC
CCACAGCGAAAGGATACTTGATCCACAAAATGCTGCCGGAGCTCGTGGAG
ATTTACATAAGGATACGAACTCCAACGGTAATGAAGCTAACCTGCTTAAA
GAAGAAATCAAACATTTGAAAATGCAAAACGACATGGGAAAATTGAGACT
TGAAAATTACAATTTGAAAAAGGAAAATGAAATTAAGGATCTTAAATTAA
AGCTTGAAAATGAAATTAACCAGTTACGTAATGAAAACGAAATTTTAAAA
TTAAGATCAGAGAATGCTCTACTGAAAGCTGAGAAACAATTTGGTATTGA
AAAGGATGTCTTGATTGCGGAGAAAATGACATTGGAGCAAGATGTGAAAG
CTTTAAAAGCAAAAAATGAAGAATTAAAGCGAAGCAGTGGAAATGAAATT
AACCTCGAGATGGAAAAACTTTCAAAGGATATTTTGAAGTGCCGAGAAGA
AAAGCGTGAAATGGAAACAAAATATGAACTTTTGAAAGCTGACAAAATAA
AAGAGGGCGGTTCACCTCAAAAATTGACAGTTGAGAACAAAGTGATGAAG
GATGAACTGGAAATAATGACAAACAAGTTTCATGAAACGGAAGAGAAGCT
GAAAGAAATGGTGAACCTATATACAGTAGCACCTAATTTTGAAAATATGG
GTAAAATCGATTTGGTAAAATTTGCCGCTCAAGTGCTAGTCAAACAAATT
CCTTATCCGCATCATGCAAATATGTACAAAGCATTAAGAAGTTTAGAAGT
ACCTTGTTCAACAGGCAAAACCTATATTTTCACCGATACATCTCGGAAAG
TATGGCCTAATGGAACTGGTCTTCATATACATATGCGTGACTTCATCGCG
AATTGGCATGATATAGAGAAAGCTAAAGTTCTGCACCCGACTGATAATCT
CAAATCCTTAACTTTAAAGAAAAACGACCACCACGGCAATTGGTTTTTTG
AAAGTGATAATGATTTTTTTGTATGTGGATATGATAATATTGTGTGCGTG
GTACTTGTCGAGGTAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015970XLOC_015970Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028211-proteinTCONS_00028211-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028211-exon-sc0000670-1575043694:99145..99180TCONS_00028211-exon-sc0000670-1575043694:99145..99180Clytia hemisphaericaexon
TCONS_00028211-exon-sc0000670-1575043694:96424..98269TCONS_00028211-exon-sc0000670-1575043694:96424..98269Clytia hemisphaericaexon
TCONS_00028211-exon-sc0000670-1510915933:99145..99180TCONS_00028211-exon-sc0000670-1510915933:99145..99180Clytia hemisphaericaexon
TCONS_00028211-exon-sc0000670-1510915933:96424..98269TCONS_00028211-exon-sc0000670-1510915933:96424..98269Clytia hemisphaericaexon
TCONS_00028211-exon-sc0000670-1491911889:99145..99180TCONS_00028211-exon-sc0000670-1491911889:99145..99180Clytia hemisphaericaexon
TCONS_00028211-exon-sc0000670-1491911889:96424..98269TCONS_00028211-exon-sc0000670-1491911889:96424..98269Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:96424..99180 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.2886	4.66484	5.69068	5.64323	3.3874	1.08775	2.08621	3.57048	3.31911	2.38579	4.49367	2.17975	2.86746	2.4183	4.24949	4.56474	6.20102	6.05543	1.99056	1.18873	3.42765	3.09973	6.53511	5.3125	4.01327	3.62672	2.92913	4.25744	4.59146	4.85774
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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