TCONS_00028039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028039
Unique NameTCONS_00028039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028039 ID=TCONS_00028039|Name=TCONS_00028039|organism=Clytia hemisphaerica|type=transcript|length=407bp
CTCAAATTGGGGTACTAACCTTTCTTAAGGCTCTGGCAGTTTTTATccgt
attttcaaaatttcctttcttgttcaaaatagcaaatttttgagtcaaaa
gagaaaaaaatatctgAAACAATTTACTGTACTCTCCCGCTCtcattaag
agaaaaaaaacaatatttttcctattttcttcACCAGTCTTACTCAAGTC
AACACGCTACTGCAAAAGGCGTGGATGTGAAAGAAATTCTTAGGTGAATG
GAACACCTAATTCAAagcaaattcttttgaaaaataattgaaggCATGTC
AGCGTAATTTGACTAATTCCCATGAAATTGTGATAGCAAAAGTAGTGGAA
ACTTTAGATTATACACTTCGCACCAGCCTAATAGGGAAGTCTTTGTCAGT
AAGACTT
Run BLAST on NCBI

transcript from alignment at sc0000661:152316..152722

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028039 ID=TCONS_00028039|Name=TCONS_00028039|organism=Clytia hemisphaerica|type=transcript|length=407bp|location=Sequence derived from alignment at sc0000661:152316..152722 (Clytia hemisphaerica)
AAGTCTTACTGACAAAGACTTCCCTATTAGGCTGGTGCGAAGTGTATAAT
CTAAAGTTTCCACTACTTTTGCTATCACAATTTCATGGGAATTAGTCAAA
TTACGCTGACATGccttcaattatttttcaaaagaatttgctTTGAATTA
GGTGTTCCATTCACCTAAGAATTTCTTTCACATCCACGCCTTTTGCAGTA
GCGTGTTGACTTGAGTAAGACTGGTgaagaaaataggaaaaatattgttt
tttttctcttaatgaGAGCGGGAGAGTACAGTAAATTGTTTcagatattt
ttttctcttttgactcaaaaatttgctattttgaacaagaaaggaaattt
tgaaaatacggATAAAAACTGCCAGAGCCTTAAGAAAGGTTAGTACCCCA
ATTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015870XLOC_015870Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028039-exon-sc0000661-1491911889:152316..152722TCONS_00028039-exon-sc0000661-1491911889:152316..152722Clytia hemisphaericaexon
TCONS_00028039-exon-sc0000661-1510915933:152316..152722TCONS_00028039-exon-sc0000661-1510915933:152316..152722Clytia hemisphaericaexon
TCONS_00028039-exon-sc0000661-1575043694:152316..152722TCONS_00028039-exon-sc0000661-1575043694:152316..152722Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000661supercontigsc0000661:152316..152722 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.358361	0.174729	0	1.58787	0.241635	0.763773	0.230365	0	0.301984	0.187028	0	0.477333	0.119167	0	0.101745	0.109188	0.13451	0.137869	0.190473	0.199316	0.692968	0.253504	0	0	0	0.171693	0.491384	0	0.397753	0.202624
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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